BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26010.1
Length=495
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926970 jgi|Araly1|926970|scaffold_202531.1 305 2e-82
Ahg476731 jgi|Araly1|476731|fgenesh2_kg.2__1861__AT1G75830.1 296 9e-80
Ahg924338 jgi|Araly1|924338|scaffold_105619.1 244 3e-64
Ahg330953 jgi|Araly1|330953|fgenesh1_pm.C_scaffold_8000296 189 2e-47
> Ahg926970 jgi|Araly1|926970|scaffold_202531.1
Length=283
Score = 305 bits (165), Expect = 2e-82
Identities = 230/260 (88%), Gaps = 9/260 (3%)
Strand=Plus/Plus
Query 52 AGTAAT-ATAATCATGGCTAAGTCTGCTGCCATCATCA-CTTTCCTCTTCGCTGCTCTTG 109
|||||| || ||||||||||||| |||| ||||||||| | || |||||||||||||||
Sbjct 8 AGTAATAATCATCATGGCTAAGTTTGCTTCCATCATCACCCTT-ATCTTCGCTGCTCTTG 66
Query 110 TTCTCTTTGCTGCTTTTGAAGCACCGATAA-TGGTGGAAGCACAGAAGTTGTGCGAGAAG 168
||||||||||||| ||||||||||| | || || |||||||||||| |||||||||||||
Sbjct 67 TTCTCTTTGCTGCATTTGAAGCACCAACAACTG-TGGAAGCACAGAGGTTGTGCGAGAAG 125
Query 169 CCAAGTGGTACTTGGTCAGGAGTTTGCGGAAACAGCAATGCGTGCAAGAA-TCAGTGCAT 227
|||||||| || |||||||||||||||||||||| ||||||| ||| |||||||||
Sbjct 126 CCAAGTGGGACATGGTCAGGAGTTTGCGGAAACAATGGCGCGTGCA-GAAATCAGTGCAT 184
Query 228 TA-ACCTTGAGGGGGCAAAACATGGATCTTGCAACTATGTCTTCCCAGCTCACAAGTGTA 286
|| || ||||||| ||| |||||||||||||||||| |||||||||||||| |||||||
Sbjct 185 TAGAC-TTGAGGGAGCACGACATGGATCTTGCAACTACGTCTTCCCAGCTCATAAGTGTA 243
Query 287 TCTGTTACTTCCCATGTTAA 306
||||||||||||||||||||
Sbjct 244 TCTGTTACTTCCCATGTTAA 263
> Ahg476731 jgi|Araly1|476731|fgenesh2_kg.2__1861__AT1G75830.1
Length=420
Score = 296 bits (160), Expect = 9e-80
Identities = 225/256 (88%), Gaps = 6/256 (2%)
Strand=Plus/Plus
Query 62 TCATGGCTAAGTCTGCTGCCATC-AT-CACTTTCCTCTTCGCTGCTCTTGTTCTCTTTGC 119
||||||||||||||||| ||||| | | |||| | ||||||||||||||| |||||||
Sbjct 52 TCATGGCTAAGTCTGCTACCATCGTTACCCTTT--TTTTCGCTGCTCTTGTTTTCTTTGC 109
Query 120 TGCTTTTGAAGCACCGATAATGGTGGAAGCACAGAAGTTGTGCGAGAAGCCAAGTGGTAC 179
|||| ||||||| || | |||||||||||||||||| || ||||||| ||||||||| ||
Sbjct 110 TGCTCTTGAAGCGCCAACAATGGTGGAAGCACAGAAATTATGCGAGAGGCCAAGTGGAAC 169
Query 180 TTGGTCAGGAGTTTGCGGAAACAGCAATGCGTGCAAGAATCAGTGCATTA-ACCTTGAGG 238
|||||||||||||||||||||| ||||| ||||||||||||||||||| | ||||||
Sbjct 170 ATGGTCAGGAGTTTGCGGAAACAATAATGCATGCAAGAATCAGTGCATTAGA-CTTGAGA 228
Query 239 GGGCAAAACATGGATCTTGCAACTATGTCTTCCCAGCTCACAAGTGTATCTGTTACTTCC 298
||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 229 AAGCACGACATGGATCTTGCAACTATGTCTTCCCAGCTCACAAATGTATCTGCTACTTCC 288
Query 299 CATGTTAAGCTACCAA 314
|||||||| |||||||
Sbjct 289 CATGTTAATCTACCAA 304
> Ahg924338 jgi|Araly1|924338|scaffold_105619.1
Length=290
Score = 244 bits (132), Expect = 3e-64
Identities = 226/270 (84%), Gaps = 12/270 (4%)
Strand=Plus/Plus
Query 52 AGTAATATAATCATGGCTAAGTC-TGCT-GC--CATCATCAC-TTTCCTCTTCGCTGCTC 106
||| || || ||||||||||| | |||| | ||||||||| || ||||||||||||
Sbjct 12 AGTTAT-TAGTCATGGCTAAG-CTTGCTACCATCATCATCACGGTT-ATCTTCGCTGCTC 68
Query 107 TTGTTCTCTTTGCTGCTTTTGAAGCACCGATAATGGTGGAAGCACAGAAGTTGTGCGAGA 166
|||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||
Sbjct 69 TTGTTCTCTTTGCTGCTTTTGAAGCACCAACAATGGTGGAAGCACAAAAGTTGTGCGAGA 128
Query 167 AGCCAAGTGGTACTTGGTCAGGAGTTTGCGGAAACAGCAATGCGTGCAAGAATCAGTGCA 226
|| |||||||| || ||||| ||||||||||| |||||||||||||||| |||||
Sbjct 129 GGCTTAGTGGTACAACGTTGGGAGTCTGCGGAAACAGTAATGCGTGCAAGAATCGGTGCA 188
Query 227 TTA-ACCTTGAGGGGGCAAAACATGGATCTTGCAACTATGTCTTCCCAGCTCACA-AGTG 284
|| || | ||||| ||| |||||| |||||||||| | |||||||| ||||| | ||
Sbjct 189 TTCTAC-TGGAGGGAGCACGACATGGTTCTTGCAACTTTATCTTCCCATATCACAGA-TG 246
Query 285 TATCTGTTACTTCCCATGTTAAGCTACCAA 314
| |||||||||||||||||||| ||||||
Sbjct 247 TGTCTGTTACTTCCCATGTTAATTTACCAA 276
> Ahg330953 jgi|Araly1|330953|fgenesh1_pm.C_scaffold_8000296
Length=216
Score = 189 bits (102), Expect = 2e-47
Identities = 102/102 (100%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 205 AATGCGTGCAAGAATCAGTGCATTAACCTTGAGGGGGCAAAACATGGATCTTGCAACTAT 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 AATGCGTGCAAGAATCAGTGCATTAACCTTGAGGGGGCAAAACATGGATCTTGCAACTAT 174
Query 265 GTCTTCCCAGCTCACAAGTGTATCTGTTACTTCCCATGTTAA 306
||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 GTCTTCCCAGCTCACAAGTGTATCTGTTACTTCCCATGTTAA 216
Score = 128 bits (69), Expect = 4e-29
Identities = 100/114 (88%), Gaps = 6/114 (5%)
Strand=Plus/Plus
Query 64 ATGGCTAAGTCTGCTGCCATCATCA-CTTTCCTCTTCGCTGCTCTTGTTCTCTTTGCTGC 122
|||||||||| |||| ||||||||| | || ||||||||||||||||||||||||||||
Sbjct 1 ATGGCTAAGTTTGCTTCCATCATCACCCTT-ATCTTCGCTGCTCTTGTTCTCTTTGCTGC 59
Query 123 TTTTG---AA-GCACCGATAATGGTGGAAGCACAGAAGTTGTGCGAGAAGCCAA 172
||||| || ||||| | ||||||||||||||| ||||| |||||||||||||
Sbjct 60 TTTTGGTGAAAGCACCAACAATGGTGGAAGCACAAAAGTTTTGCGAGAAGCCAA 113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17971282419
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5