BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26020.1
Length=274
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926970 jgi|Araly1|926970|scaffold_202531.1 337 3e-92
Ahg476731 jgi|Araly1|476731|fgenesh2_kg.2__1861__AT1G75830.1 287 3e-77
Ahg330953 jgi|Araly1|330953|fgenesh1_pm.C_scaffold_8000296 167 4e-41
> Ahg926970 jgi|Araly1|926970|scaffold_202531.1
Length=283
Score = 337 bits (182), Expect = 3e-92
Identities = 237/263 (90%), Gaps = 6/263 (2%)
Strand=Plus/Plus
Query 15 AAGTAGTAATAATCATCATGGCTAAGTTTGCTTCCATCATCACCTTTATCTACGCTGCTC 74
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 4 AAGTAGTAATAATCATCATGGCTAAGTTTGCTTCCATCATCACCCTTATCTTCGCTGCTC 63
Query 75 TTGTTCTCTTTGCAGCTTTTGAAGTACCAACAA-TGGTGGAAGCACAGAAGTTGTGCGAG 133
||||||||||||| || ||||||| |||||||| || |||||||||||| ||||||||||
Sbjct 64 TTGTTCTCTTTGCTGCATTTGAAGCACCAACAACTG-TGGAAGCACAGAGGTTGTGCGAG 122
Query 134 AAGCCAAGTGGTACTTGGTCAGGAGTTTGCGGAAACAGCAATGCATGCAAGAA-TCAGTG 192
||||||||||| || |||||||||||||||||||||| || |||| ||| ||||||
Sbjct 123 AAGCCAAGTGGGACATGGTCAGGAGTTTGCGGAAACAATGGCGCGTGCA-GAAATCAGTG 181
Query 193 CATTA-ACCTTGAAGGAGCAAAACATGGATCTTGCAACTATGTCTTCCCAGCTCACAAGT 251
||||| || |||| |||||| |||||||||||||||||| |||||||||||||| ||||
Sbjct 182 CATTAGAC-TTGAGGGAGCACGACATGGATCTTGCAACTACGTCTTCCCAGCTCATAAGT 240
Query 252 GTATCTGTTACGTCCCATGTTAA 274
||||||||||| |||||||||||
Sbjct 241 GTATCTGTTACTTCCCATGTTAA 263
> Ahg476731 jgi|Araly1|476731|fgenesh2_kg.2__1861__AT1G75830.1
Length=420
Score = 287 bits (155), Expect = 3e-77
Identities = 218/248 (88%), Gaps = 6/248 (2%)
Strand=Plus/Plus
Query 30 TCATGGCTAAGTTTGCTTCCATCATCA-CCTTTATCTACGCTGCTCTTGTTCTCTTTGCA 88
|||||||||||| |||| ||||| | | ||||| | | ||||||||||||| |||||||
Sbjct 52 TCATGGCTAAGTCTGCTACCATCGTTACCCTTT-TTTTCGCTGCTCTTGTTTTCTTTGCT 110
Query 89 GCTTTTGAAGTACCAACAATGGTGGAAGCACAGAAGTTGTGCGAGAAGCCAAGTGGTACT 148
||| |||||| ||||||||||||||||||||||| || ||||||| ||||||||| ||
Sbjct 111 GCTCTTGAAGCGCCAACAATGGTGGAAGCACAGAAATTATGCGAGAGGCCAAGTGGAACA 170
Query 149 TGGTCAGGAGTTTGCGGAAACAGCAATGCATGCAAGAATCAGTGCATTA-ACCTTGAAG- 206
|||||||||||||||||||||| ||||||||||||||||||||||||| | |||| ||
Sbjct 171 TGGTCAGGAGTTTGCGGAAACAATAATGCATGCAAGAATCAGTGCATTAGA-CTTG-AGA 228
Query 207 GAGCAAAACATGGATCTTGCAACTATGTCTTCCCAGCTCACAAGTGTATCTGTTACGTCC 266
|||| |||||||||||||||||||||||||||||||||||| |||||||| ||| |||
Sbjct 229 AAGCACGACATGGATCTTGCAACTATGTCTTCCCAGCTCACAAATGTATCTGCTACTTCC 288
Query 267 CATGTTAA 274
||||||||
Sbjct 289 CATGTTAA 296
> Ahg330953 jgi|Araly1|330953|fgenesh1_pm.C_scaffold_8000296
Length=216
Score = 167 bits (90), Expect = 4e-41
Identities = 98/102 (96%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 173 AATGCATGCAAGAATCAGTGCATTAACCTTGAAGGAGCAAAACATGGATCTTGCAACTAT 232
||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 115 AATGCGTGCAAGAATCAGTGCATTAACCTTGAGGGGGCAAAACATGGATCTTGCAACTAT 174
Query 233 GTCTTCCCAGCTCACAAGTGTATCTGTTACGTCCCATGTTAA 274
|||||||||||||||||||||||||||||| |||||||||||
Sbjct 175 GTCTTCCCAGCTCACAAGTGTATCTGTTACTTCCCATGTTAA 216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9538897250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5