BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26030.1
Length=1656
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481458 jgi|Araly1|481458|fgenesh2_kg.4__518__AT2G26030.1 2084 0.0
> Ahg481458 jgi|Araly1|481458|fgenesh2_kg.4__518__AT2G26030.1
Length=1561
Score = 2084 bits (1128), Expect = 0.0
Identities = 1401/1534 (91%), Gaps = 13/1534 (1%)
Strand=Plus/Plus
Query 55 TCGACGGTGAGTTCTTCAGACCAAGCTCGATTACATG---ATTGTGTGTCTGATTTTGGG 111
||| |||||||||||||||||| ||||||||| |||| ||| ||| |||||||||| |
Sbjct 36 TCGCCGGTGAGTTCTTCAGACCCAGCTCGATTGCATGATTATTATGTATCTGATTTTGTG 95
Query 112 ATCAGTTCTGAAACTATTTGATACTTTAGGATTTTGTTTCTTGCGATGAATTGCGATAGA 171
| || |||||||||| |||||| || |||||||| |||||||||||||||||||||||||
Sbjct 96 ACCAATTCTGAAACTTTTTGATTCTCTAGGATTTCGTTTCTTGCGATGAATTGCGATAGA 155
Query 172 ATCTGCGAATTGCCAGATTCTTTACTAACTCAAGTACTCTCATACCTTCCGACCATAGAT 231
||| ||||||||||||||||||| ||||||||| |||||||||||||||| |||| ||||
Sbjct 156 ATCAGCGAATTGCCAGATTCTTTGCTAACTCAAATACTCTCATACCTTCCAACCAAAGAT 215
Query 232 TCCGTTAAAACAAGCGTTTTATCGAAACGATGGGAATTTCTCTGGCTTAGGGTTCCTGTT 291
|||||||| || ||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 216 TCCGTTAAGACTAGCGTTTTATCTAAAAGATGGGAATTTCTCTGGCTTAGGGTTCCTGTT 275
Query 292 CTCGACTTAAAAGTCAGCGATTTCCCTGACGAAAACTACGCAAGCTTTATCGACAATTTT 351
|| ||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||
Sbjct 276 CTTGACTTAAAAGTCAGCAATTTCCCTGAAGAAAACTACGCGAGCTTTATCGACAATTTT 335
Query 352 CTCGAGTTTAATCGAAAATCACGAATGCGAAAATTCAAGTTGAAGTATGATGAATACACT 411
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 CTCGAGTTTAATCGAAATTCACGAATGCGAAAATTCAAGTTGAAGTATGATGAATACACT 395
Query 412 TACGACGATGATCGGTTAGCTGGGTGGGTTGTAACAACGGTTGATCGCGGAATTCAACAT 471
|| |||||||||||||| || ||||||||||| ||||||||||||||||||||||| |||
Sbjct 396 TATGACGATGATCGGTTGGCGGGGTGGGTTGTTACAACGGTTGATCGCGGAATTCAGCAT 455
Query 472 CTAGATGCTAAAGGTTTTGAGACTAATATGTGTGTAAGAGAGTTCATGCCTCAGAATATT 531
| |||||||| |||||||||||| |||||||||||||||||||||||||||| || ||
Sbjct 456 TTGGATGCTAATGGTTTTGAGACTGATATGTGTGTAAGAGAGTTCATGCCTCAAAACATA 515
Query 532 TATAAGTGCAATACATTGGTGTCTCTAATGCTTGTAACCGTAGGAATCGAGAATCCAGAG 591
|||||| | ||||||||||||||| | |||||||||||||||||||||||||||| |||
Sbjct 516 TATAAGAGTAATACATTGGTGTCTTTGGTGCTTGTAACCGTAGGAATCGAGAATCCCGAG 575
Query 592 TTCGTTGTTTCACTACCGTCTCTTAAGATAATGCATTTAGAAGATGTTTGGTATTATGAT 651
||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 576 TTCGTTGTTTCTTTACCGTCTCTTAAGAAAATGCATTTAGAAGATGTTTGGTATTGGGAT 635
Query 652 GATCCTTTGATCATGGAGAAGATTATCTCAGGTTGTCCTGTTCTTGAAGATTTTGTATTG 711
||||||||| |||| |||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 636 GATCCTTTGGTCATTGAGAAGGTTATCTCAGGTTGTCCTGTTCTTGAAGATCTTGTATTG 695
Query 712 ATTAGGCCTATTGATTTTTGTAATCTAGATGTTCTGCAGTTTCTT-CGTGTGAGGTCTCT 770
|||||| |||||||||||||| |||||||| ||||| ||||||| | |||||||||
Sbjct 696 ATTAGGGCTATTGATTTTTGTGTTCTAGATGATCTGCGGTTTCTTAAG-GTGAGGTCTAA 754
Query 771 GAGTCTTAGAAGCTTTCGTCTTACGTTTGAGTATAGTGTTTCTTGTACGTATTTTTCGGT 830
|||||||| ||||||||||||| |||||||||||||| | || |||| |||||||||||
Sbjct 755 GAGTCTTAAAAGCTTTCGTCTTGCGTTTGAGTATAGTATGGCTGGTACATATTTTTCGGT 814
Query 831 TGAGATTGATGCTCCTAGACTTGAGTATTTGAATTTTAATGATGACCAATCTGATACGAT 890
|||| |||||||||||||||| ||||||||||||||||||||| |||||||||||| |||
Sbjct 815 TGAGGTTGATGCTCCTAGACTCGAGTATTTGAATTTTAATGATAACCAATCTGATATGAT 874
Query 891 TGTAGTCAAGAACATGACTTCTTTGTCGATGATTGATATTGATAGTGAATTTAATGTTAA 950
||||||||||||| | | |||||| |||||||| |||||||||| |||||||||||||||
Sbjct 875 TGTAGTCAAGAACCTAAATTCTTTATCGATGATCGATATTGATACTGAATTTAATGTTAA 934
Query 951 GTTTGGCGGCAGTCGTTTGGAACCGGGGGATTTACGCAAGAGAGATATCATCCGTGATTT 1010
|||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 935 GTTTGGCGGCAGTCCTTTGGAACCGGAGGATTTACGCAAGAGAGATATTATCCGTGATTT 994
Query 1011 TTTAACCGCGATATCTTGTGTAAGACATATGATCATCTCTCGGCGTACTTTAGAGGTCCT 1070
|||||||| |||||||||| ||||| ||||||||||||||| ||||||||||||||||||
Sbjct 995 TTTAACCGGGATATCTTGTATAAGAGATATGATCATCTCTCAGCGTACTTTAGAGGTCCT 1054
Query 1071 AGATCGATATTCGAAGTTGGTACCTATTCCGAAATTCGATAACTTGTACCGTTTACAAGC 1130
| ||| |||||| || |||| ||| ||||| ||||| ||||||||||| |||||||||||
Sbjct 1055 ATATCTATATTCCAAATTGGGACCGATTCCCAAATTTGATAACTTGTATCGTTTACAAGC 1114
Query 1131 TGCGGTTTCTCGATCCATGTTGCAGTTGTTGCTTGTCTTTCTTGAGAGCTGCCCAAATCT 1190
|||| ||||| |||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1115 TGCGTTTTCTAGATCCATGTTCCAGTTGTTGCTTGTCTTTCTTGAGAGCTGCCCGAATCT 1174
Query 1191 TGAAAACCTCATCTTGGACTTTACTGTTTCAACGGAGCCTGAGCAAGATGGACTTACCTA 1250
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1175 GGAAAACCTCATCTTGGACTTTGCTGTTTCAACGGAGCCTGAGCAAGATGGACTTACCTA 1234
Query 1251 TGTCCCTCAGTGTTTGTTATCGAGTTTGGAGTGTGTTGAGATTAGAGAATTGATTATGGG 1310
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1235 TGTCCCTCAGTGTTTGTTATCGACTCTGGAGTGTGTTGAGATTAGAGAATTGATTATGGG 1294
Query 1311 AGAAGAAACCGGGGAGAAATTAGTGAGGTATTTTCTCAAGAATTCAGTAGTTCTCAAGAA 1370
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1295 AGAAGAAACCGGGAAGAAATTAGTGAGCTATTTTCTCAAGAATTCAGTAGTTCTCCAGAA 1354
Query 1371 ACTCATTTTGCGTTTAGAAG-ATTCTTCGATAGCAAACCAAGATTCAGATATCTTCAAGG 1429
||||||| ||||||| ||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1355 ACTCATTCTGCGTTTC-AAGGATTCTTCGATAGCAACCCAAGATTCAGATATCTTCAAGG 1413
Query 1430 AGCTTAGTACTTTCACAAAGCGTTCTCGCAGCTGTGAGGTTATCATCATTCATTGACAAT 1489
||||| ||| ||||||||| |||| ||||||||||||||| |||||||||||||||||
Sbjct 1414 AGCTTCGTAGTTTCACAAAACGTTTTCGCAGCTGTGAGGT---CATCATTCATTGACAAT 1470
Query 1490 GTTTATAGAAGATCATTGTAGAAATCTTTTGTTATGAAAAATTTGCAATTAGGCTTAGCC 1549
||||| ||| |||| ||||| || ||||||||||||||||| |||||||||| ||||
Sbjct 1471 GTTTA--GAATATCAGTGTAGTGATATTTTGTTATGAAAAATT-GCAATTAGGCCTAGCA 1527
Query 1550 TTTTCCAGACATTGGTGTGGATAATATTAACTGT 1583
|||||||||| |||||||||||||||||||||||
Sbjct 1528 TTTTCCAGACGTTGGTGTGGATAATATTAACTGT 1561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62087099350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5