BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G26040.1 Length=573 Score E Sequences producing significant alignments: (Bits) Value Ahg932813 jgi|Araly1|932813|scaffold_400801.1 835 0.0 > Ahg932813 jgi|Araly1|932813|scaffold_400801.1 Length=610 Score = 835 bits (452), Expect = 0.0 Identities = 532/571 (93%), Gaps = 3/571 (1%) Strand=Plus/Plus Query 1 ATGAGCTCATCCCCGGCCGTGAAAGGCCTAACCGATGAAGAGCAGAAAACCCTCGAACCG 60 |||||||| ||||||| |||||||||||||||||| |||||||| ||||||||||||||| Sbjct 21 ATGAGCTCCTCCCCGGTCGTGAAAGGCCTAACCGACGAAGAGCACAAAACCCTCGAACCG 80 Query 61 GTTATCAAAACGTACCACCAGTTCGAACCAGACCCAACCACGTGCACTTCTCTCATAACC 120 ||||||||||| ||||||| ||||||||| |||||| |||| ||||| |||||||||||| Sbjct 81 GTTATCAAAACATACCACCGGTTCGAACCGGACCCATCCACTTGCACCTCTCTCATAACC 140 Query 121 CAACGCATCCACGCTCCGGCCTCCGT-GGTTTGGCCTCTTATCCGCCGCTTCGACAACCC 179 ||||||||| |||| || |||||| | |||||||| || |||||||| ||||||||||| Sbjct 141 CAACGCATCGACGCCCCCGCCTCC-TCCGTTTGGCCGCTCATCCGCCGTTTCGACAACCC 199 Query 180 CGAACGCTACAAACACTTTGTAAAAAGGTGCCGTCTCATCTCCGGTGATGGTGACGTCGG 239 |||||| ||||||||||| || ||||| ||||||||||||||||| ||||||| |||| Sbjct 200 CGAACGGTACAAACACTTCGTCAAAAGCTGCCGTCTCATCTCCGGCGATGGTGGTATCGG 259 Query 240 AAGCGTCAGAGAAGTGACCGTAATCTCCGGCCTCCCAGCCTCAACCAGTACCGAGCGGCT 299 ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 260 AAGCGTCCGAGAAGTGACCGTAATCTCCGGCCTCCCAGCCTCAACCAGCACCGAGCGGCT 319 Query 300 TGAGTTCGTCGATGACGACCACCGTGTTCTAAGCTTCAGGGTCGTCGGCGGAGAGCACCG 359 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 320 TGAGTTCGTCGACGACGACCACCGTGTTCTAAGCTTCAGGGTCGTCGGCGGAGAACACCG 379 Query 360 ACTCAAGAACTACAAATCAGTGACGTCGGTCAATGAGTTCTTGAATCAAGATTCCGGCAA 419 || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 380 GCTTAAGAACTACAAATCAGTGACGTCGGTCAACGAGTTCTTGAATCAAGATTCCGGCAA 439 Query 420 GGTTTACACGGTGGTTCTTGAATCTTACACCGTTGATATTCCCGAGGGAAACACAGAGGA 479 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 440 GGTCTACACGGTGGTTCTTGAATCTTACACCGTTGATATTCCCGAGGGAAACACAGAGGA 499 Query 480 AGACACTAAAATGTTTGTGGACACTGTCGTCAAACTCAACCTTCAGAAACTCGGAGTTGC 539 |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 500 AGACACCAAAATGTTTGTGGACACTGTCGTCAAACTCAATCTTCAGAAACTCGGAGTTGC 559 Query 540 CGCCACATCTGCACCTATGCATGATGA-TGA 569 |||||| |||||||||||||||||||| ||| Sbjct 560 CGCCACTTCTGCACCTATGCATGATGAATGA 590 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20947418361 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5