BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26040.1
Length=573
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932813 jgi|Araly1|932813|scaffold_400801.1 835 0.0
> Ahg932813 jgi|Araly1|932813|scaffold_400801.1
Length=610
Score = 835 bits (452), Expect = 0.0
Identities = 532/571 (93%), Gaps = 3/571 (1%)
Strand=Plus/Plus
Query 1 ATGAGCTCATCCCCGGCCGTGAAAGGCCTAACCGATGAAGAGCAGAAAACCCTCGAACCG 60
|||||||| ||||||| |||||||||||||||||| |||||||| |||||||||||||||
Sbjct 21 ATGAGCTCCTCCCCGGTCGTGAAAGGCCTAACCGACGAAGAGCACAAAACCCTCGAACCG 80
Query 61 GTTATCAAAACGTACCACCAGTTCGAACCAGACCCAACCACGTGCACTTCTCTCATAACC 120
||||||||||| ||||||| ||||||||| |||||| |||| ||||| ||||||||||||
Sbjct 81 GTTATCAAAACATACCACCGGTTCGAACCGGACCCATCCACTTGCACCTCTCTCATAACC 140
Query 121 CAACGCATCCACGCTCCGGCCTCCGT-GGTTTGGCCTCTTATCCGCCGCTTCGACAACCC 179
||||||||| |||| || |||||| | |||||||| || |||||||| |||||||||||
Sbjct 141 CAACGCATCGACGCCCCCGCCTCC-TCCGTTTGGCCGCTCATCCGCCGTTTCGACAACCC 199
Query 180 CGAACGCTACAAACACTTTGTAAAAAGGTGCCGTCTCATCTCCGGTGATGGTGACGTCGG 239
|||||| ||||||||||| || ||||| ||||||||||||||||| ||||||| ||||
Sbjct 200 CGAACGGTACAAACACTTCGTCAAAAGCTGCCGTCTCATCTCCGGCGATGGTGGTATCGG 259
Query 240 AAGCGTCAGAGAAGTGACCGTAATCTCCGGCCTCCCAGCCTCAACCAGTACCGAGCGGCT 299
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 260 AAGCGTCCGAGAAGTGACCGTAATCTCCGGCCTCCCAGCCTCAACCAGCACCGAGCGGCT 319
Query 300 TGAGTTCGTCGATGACGACCACCGTGTTCTAAGCTTCAGGGTCGTCGGCGGAGAGCACCG 359
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 320 TGAGTTCGTCGACGACGACCACCGTGTTCTAAGCTTCAGGGTCGTCGGCGGAGAACACCG 379
Query 360 ACTCAAGAACTACAAATCAGTGACGTCGGTCAATGAGTTCTTGAATCAAGATTCCGGCAA 419
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 380 GCTTAAGAACTACAAATCAGTGACGTCGGTCAACGAGTTCTTGAATCAAGATTCCGGCAA 439
Query 420 GGTTTACACGGTGGTTCTTGAATCTTACACCGTTGATATTCCCGAGGGAAACACAGAGGA 479
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 GGTCTACACGGTGGTTCTTGAATCTTACACCGTTGATATTCCCGAGGGAAACACAGAGGA 499
Query 480 AGACACTAAAATGTTTGTGGACACTGTCGTCAAACTCAACCTTCAGAAACTCGGAGTTGC 539
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 500 AGACACCAAAATGTTTGTGGACACTGTCGTCAAACTCAATCTTCAGAAACTCGGAGTTGC 559
Query 540 CGCCACATCTGCACCTATGCATGATGA-TGA 569
|||||| |||||||||||||||||||| |||
Sbjct 560 CGCCACTTCTGCACCTATGCATGATGAATGA 590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20947418361
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5