BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26050.1
Length=666
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900102 jgi|Araly1|900102|Al_scaffold_0004_752 876 0.0
> Ahg900102 jgi|Araly1|900102|Al_scaffold_0004_752
Length=660
Score = 876 bits (474), Expect = 0.0
Identities = 595/652 (91%), Gaps = 13/652 (2%)
Strand=Plus/Plus
Query 1 ATGTGTGAGTCAAGCAACAAAGTCAGAGTATCGCCATACCCGCTTCGGTCTTCGAGGACC 60
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 1 ATGTGTGAGTCAAGCAACAATGTCAGAGTGTCGCCATACCCGCTTCGGTCTTCTAGGACC 60
Query 61 GACAAACACAAGGCGTCAGAGT---CGCCTATTGAGACAGGTTGGGAGGATGTGCGTGGA 117
|||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 61 GACAAACACAAGTCGTCTGAGTCGCCGCCTATTGAGACAGGTTGGGAGGATGTGCGTGGA 120
Query 118 TGTCATCCTTACATGTGCGATACGAGTGTTCGTCACTCCAATTGTTTCAAGCAGTTCCGC 177
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 121 TGTCATCCTTACATGTGCGATACGAGTGTTCGTCACTCCAACTGTTTTAAGCAGTTCCGT 180
Query 178 AGAAA-AACCATAAAAAAGCGCCTATACC-CCAAGACCTTACATTGTCCTCTCTGTAGAG 235
| ||| |||| || ||||||| || | | ||||||||||||| ||||||||||||||||
Sbjct 181 AAAAAGAACCG-AACAAAGCGCTTA-AGCACCAAGACCTTACAATGTCCTCTCTGTAGAG 238
Query 236 GTGAAGTATCCGAGACGACAAAGGTGACGAGCACTGCAAGAAGATTTATGAATGCTAAAC 295
| ||||||| |||| ||||||| ||||| ||||||||||||||||||||||||||| |||
Sbjct 239 GAGAAGTATTCGAGGCGACAAACGTGACAAGCACTGCAAGAAGATTTATGAATGCTCAAC 298
Query 296 CGAGGTCTTGCTCCGTAGAGGATTGCAAATTCTCTGGGACGTTTTCTCAGCTTACTAAGC 355
||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 299 CGAGGTCTTGCTCTGTAGAGGATTGCAAATTCTCTGGGACGTATTCTCAGCTTAATAAGC 358
Query 356 ACTTGAAAACTGAGCATCGCGGTATTGTGCCACCAAAGGTCGATCCACTGAGACAACAGA 415
|||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||
Sbjct 359 ACTTGAAAACTGAGCATCGCGGTATTGTCCCACAAAAGGTCGATCCACAGAGACAACAGA 418
Query 416 GATGGGAAATGATGGAGAGACATTCTGAATACGTTGAACTCATGACTGCAGCTGGGATTT 475
| |||||||||||||||||| || |||||||||||||||||||||||||||||| ||||
Sbjct 419 GGTGGGAAATGATGGAGAGAGATGCTGAATACGTTGAACTCATGACTGCAGCTGAGATTC 478
Query 476 CGCGTATG-G-CTGAGGT-GATGCAACAACAGCTTCCCCAGGATCAGAATCATCCTCATG 532
||| ||| | | ||||| | |||| |||||||||||| | ||||| ||||||||||||
Sbjct 479 CGC--ATGCGACCGAGGTTG-TGCATCAACAGCTTCCCAACGATCATCATCATCCTCATG 535
Query 533 TGTTTCAAGTGACCGTTAATGGAACCATATGGAATCTAATTGATCCGAGTCAGGGAAGGA 592
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 536 TGTTTCGGGTGACCGTTAATGGAGCCATATGGAATCTAATTGATCCGAGTCAGGGAAGGA 595
Query 593 ATGGATTAGGCATCACCAACTATAGCGCAATGCAGTTTGTACCATTAAGCAT 644
|||||||||||||||||||||||| | ||||||||||| ||||||| |||||
Sbjct 596 ATGGATTAGGCATCACCAACTATACCCCAATGCAGTTTCTACCATTGAGCAT 647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24436789797
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5