BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26060.1
Length=1386
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932816 jgi|Araly1|932816|scaffold_400804.1 1797 0.0
Ahg888801 jgi|Araly1|888801|Al_scaffold_0007_787 863 0.0
> Ahg932816 jgi|Araly1|932816|scaffold_400804.1
Length=1104
Score = 1797 bits (973), Expect = 0.0
Identities = 1051/1090 (96%), Gaps = 0/1090 (0%)
Strand=Plus/Plus
Query 94 TCATAGATGGATTTGATGGAGAAGAACTTGGAGTTAGTGGAGATTCAGAAACTAGAAGGC 153
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 15 TCATAGATGGATTTGATGGAGAAGAACTTGGAGTTAGTGGAGATTCAGAAACTTGAAGGC 74
Query 154 CACACCGATCGTGTTTGGAGCGTAGCTTGGAACCCCGTTTCTTCTCACGCCGACGGTGTT 213
||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 75 CACACCGATCGGGTTTGGAGCGTAGCTTGGAACCCTGTCTCTTCTCACGCCGACGGTGTT 134
Query 214 TCACCGATTCTTGCTTCTTGCAGTGGCGATAACACTGTTCGAATCTGGGAACAAAGCTCT 273
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 135 TCACCGATTCTTGCTTCTTGCAGTGGCGATAGCACCGTTCGAATCTGGGAACAAAGCTCT 194
Query 274 CTCTCTCGCTCCTGGACTTGCAAGACAGTTTTGGAAGAGACGCATACAAGAACTGTGAGG 333
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 195 CTCTCTCGCTCCTGGACTTGCAAGACAGTTTTGGATGAAACGCATACAAGAACTGTGAGG 254
Query 334 TCGTGCGCTTGGTCACCCTCAGGACAGTTATTGGCCACTGCAAGTTTTGATGGTACCACT 393
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 TCATGTGCTTGGTCACCCTCAGGACAGTTATTGGCCACTGCAAGTTTTGATGGTACCACT 314
Query 394 GGCATTTGGAAGAATTACGGTTCTGAGTTTGAGTGTATTTCCACTTTGGAGGGACATGAA 453
|||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 315 GGCATTTGGAAGAAATATGGTTCTGAGTTTGACTGTATTTCCACTTTAGAGGGACATGAA 374
Query 454 AACGAAGTCAAAAGTGTATCATGGAATGCATCTGGTTCATGCCTTGCAACATGTAGTAGA 513
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 375 AACGAAGTCAAAAGTGTATCATGGAATGCATCTGGTTCACACCTTGCAACATGTAGTAGA 434
Query 514 GATAAGTCTGTTTGGATTTGGGAAGTGCTTGAAGGGAATGAATATGACTGTGCTGCGGTA 573
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 435 GATAAGTCTGTTTGGATTTGGGAAGTGCTTGAAGGGAATGAGTATGATTGTGCTGCGGTG 494
Query 574 TTAACTGGGCATACACAAGATGTGAAGATGGTTCAGTGGCATCCCACCATGGATGTTTTA 633
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 495 TTAACTGGGCATACACAAGATGTGAAGATGGTTCAATGGCATCCTACCATGGATGTTTTA 554
Query 634 TTTTCTTGCAGTTATGATAACACCATCAAGGTTTGGTGGTCTGAAGATGATGATGGTGAG 693
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 555 TTTTCTTGCAGTTATGATAACACCATAAAGGTTTGGTGGTCTGAAGATGATGATGGTGAG 614
Query 694 TATCAATGTGTCCAAACCTTAGGTGAATCTAACAACGGTCACTCTTCAACGGTATGGTCC 753
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 615 TATCAATGTGTCCAAACCTTAGGTGAATCTAACAACGGTCACTCTTCTACGGTGTGGTCC 674
Query 754 ATCTCATTTAACGCTGCAGGGGACAAGATGGTCACTTGTAGTGATGATCTAACCTTGAAG 813
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 675 ATCTCATTTAACGCTGCAGGGGACAAGATGGTCACTTGTAGTGATGATCTAACATTGAAG 734
Query 814 ATATGGGGGACAGATATTGCCAAGATGCAGTCTGGTGAAGAATATGCACCTTGGATTCAT 873
||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 735 ATATGGGGGACGGATATTGCCAGGATGCAGTCTGGTGAAGATTATGCACCTTGGATTCAT 794
Query 874 CTTTGTACTCTCTCTGGCTATCATGACCGTACCATATACTCAGCTCACTGGTCAAGGGAC 933
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 795 CTTTGTACTCTCTCTGGTTATCATGACCGTACCATATACTCTGCTCACTGGTCAAGGGAT 854
Query 934 GACATTATTGCCAGTGGAGCAGGCGATAATGCTATACGGTTGTTTGTGGACAGCAAACAT 993
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 855 GACATTATTGTCAGTGGAGCAGGCGATAATGCTATACGGTTGTTTGTGGAGAGCAAACAT 914
Query 994 GACTCTGTTGATGGACCTTCATATAATCTTTTGCTGAAGAAGAATAAAGCACATGAAAAT 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 GACTCTGTTGATGGACCTTCATATAATCTTTTGCTGAAGAAGAATAAAGCACATGAAAAT 974
Query 1054 GATGTAAACTCTGTCCAATGGTCACCCGGTGAGGGGAACCGGTTGCTTGCGTCGGCTAGT 1113
|||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 975 GATGTAAATTCTGTCCAATGGTCACCCGGTGAGGGGAACCGGTTACTTGCCTCGGCTAGT 1034
Query 1114 GATGATGGGATGGTCAAGATTTGGCAGCTTGCAACTAAACCGTGACTGCTGTTGGTTTGG 1173
|| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1035 GACGATGGGATGGTCAAGATTTGGCAGCTTGCAACTAAACAGTGACTGGTGTTGGTTTGG 1094
Query 1174 ATAGGTTCTG 1183
||||||||||
Sbjct 1095 ATAGGTTCTG 1104
> Ahg888801 jgi|Araly1|888801|Al_scaffold_0007_787
Length=1041
Score = 863 bits (467), Expect = 0.0
Identities = 865/1053 (82%), Gaps = 44/1053 (4%)
Strand=Plus/Plus
Query 106 TTGATGGAGAAGAACTT-GGAGTTAGTGGAGATTCAGAAACTAGAAGGCCACACCGATCG 164
|||||||| ||||| || || |||||| ||| |||||||||| ||||| |||||||||||
Sbjct 7 TTGATGGATAAGAATTTAGG-GTTAGTAGAGGTTCAGAAACTTGAAGGTCACACCGATCG 65
Query 165 TGTTTGGAGCGTAGCTTGGAACCCCGTTTCTTCTCACGCCGACGGTGTTTCACCGATTCT 224
|||||||| ||| || ||||| |||| | ||||||| | | | | ||||
Sbjct 66 TGTTTGGAACGTCGCCTGGAATCCCG--------C-CGCCGAC-G-G--T----G-TTCT 107
Query 225 TGCTTCTTGCAGTGGCGATAACACTGTTCGAATCTGGGAACAAAGCTCTCTCT-CTCGCT 283
||| || ||||||| |||||| || || ||||||||||| || ||||| || | |||| |
Sbjct 108 TGCCTCCTGCAGTGCCGATAAGACCGTACGAATCTGGGAGCAGAGCTCGCT-TACTCGTT 166
Query 284 CCTGGACTTGCAAGACAGTTTTGGAAGAG-ACGCATACAAGAACTGTGAGGTCGTGCGCT 342
||||||| |||||| |||||||||||| | ||||| || |||||||| | ||||| |||
Sbjct 167 CCTGGACCTGCAAGGCAGTTTTGGAAG-GCACGCACACTAGAACTGTCAAGTCGTTAGCT 225
Query 343 TGGTCACCCTCAG-GACAGTTATTGGCCACTGCAAGTTTTGATGGTACCACTGGCATTTG 401
|||||||| || | || |||||||||||||||||||||| ||||| || ||| || ||||
Sbjct 226 TGGTCACCGTCTGCGA-AGTTATTGGCCACTGCAAGTTTCGATGGCACTACTTGCGTTTG 284
Query 402 GAAGAATTACGGTTCTGAGTTTGAGTGTATTTCCACTTTGGAGGGACATGAAAACGAAGT 461
| | |||| | | |||| | |||| | | ||| ||| ||| |||||||| ||||||
Sbjct 285 GGATAATTTTGCTACTGACTCCGAGTCTGTCTCCGTTTTACAGGTACATGAAAGCGAAGT 344
Query 462 CAAAAGTGTATCATGGAATGCATCTGGTTC-ATGCCTTGCAACATGTAGTAGAGATAAGT 520
|||||||||||||||||||||||||||||| || |||||||||||| ||||||| ||||
Sbjct 345 CAAAAGTGTATCATGGAATGCATCTGGTTCGTTG-CTTGCAACATGTGGTAGAGACAAGT 403
Query 521 CTGTTTGGATTTGGGAAGTGCTTGA-AGG-GAATGAATATGACTGTGCTGCGGTATTAAC 578
|||| |||||||||||||| | | | || |||||||| ||| |||||||| || |||||
Sbjct 404 CTGTCTGGATTTGGGAAGTAC-T-ACCGGAGAATGAATTTGATTGTGCTGCAGTGTTAAC 461
Query 579 TGGGCATACACAAGATGTGAAGATGGTTCAGTGGCATCCCACCATGGATGTTTTATTTTC 638
||| ||| || ||||||| |||||||| | ||||||||| || ||||||||||| || ||
Sbjct 462 TGGTCATTCAGAAGATGTTAAGATGGTCCTGTGGCATCCTACTATGGATGTTTTGTTCTC 521
Query 639 TTGCAGTTATGATAACACCATCAAGGTTTGGTGGTCTGAAGATGATGATGGTGAGTATCA 698
||| |||||||||||||| ||||| ||||||||||||| ||||| |||||||| ||| |
Sbjct 522 TTGAAGTTATGATAACACTGTCAAGATTTGGTGGTCTGAGGATGAAGATGGTGATTAT-A 580
Query 699 A-TGTGTCCAAACCTTAGGTGAATCTAACAACGGTCACTCTTCAACGGTATGGTCCATCT 757
| ||||||||||||||||||||||||||||| ||||| ||||| || || ||| ||||
Sbjct 581 ATTGTGTCCAAACCTTAGGTGAATCTAACAATGGTCATTCTTCCACCGTCTGGAGTATCT 640
Query 758 CATTTAACGCTGCAGGGGACAAGATGGTCACTTGTAGTGATGATCTAACCTTGAAGATAT 817
| ||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 641 CCTTTAATGCTGCAGGGGACAAGATGGTCACTTGTAGTGATGATCTAACAGTGAAAATAT 700
Query 818 GGGGGACAGATATTGCCAAG-ATGCAGTCTGGTGAAGAATATGCACCTTGGATTCATCTT 876
|| |||||||||| | ||| ||||| |||||||||| ||||| ||| |||| ||| ||
Sbjct 701 GGAAGACAGATATTTC-AAGGATGCAATCTGGTGAAGGATATGTACCCTGGACCCATGTT 759
Query 877 TGTACTCTCTCTGGCTAT-CATGACCGTACCATATACTCAGCTCACTGGTCAAGGGACGA 935
||||| ||||||| || | || || ||||||||||| |||| ||| |||||||||||||
Sbjct 760 TGTACACTCTCTG-CTTTTCACGATCGTACCATATATTCAGTTCATTGGTCAAGGGACGG 818
Query 936 CATTATTGCCAGTGGAGCAGGCGATAATGCTATACGGTTGTTTGTGGACAGCAAACA-TG 994
||||||| || |||||||||||| || |||||| ||| |||||||||||||| || ||
Sbjct 819 TGTTATTGCTAGCGGAGCAGGCGATGATACTATACAGTTATTTGTGGACAGCAA-CAGTG 877
Query 995 ACTCTGTTGATGGACCTTCATATAATCTTTTGCTGAAGAA-GAATAAAGCACATGAAAAT 1053
||||||||||| |||||||||| || || ||||| ||||| || ||||||||||||||
Sbjct 878 ACTCTGTTGATAGACCTTCATACAAACTCTTGCTTAAGAAAGAG-AAAGCACATGAAAAG 936
Query 1054 GATGTAAACTCTGTCCAATGGTCACCCGGTGAGGGGAA-CCGGTTGCTTGCGTCGGCTAG 1112
|||||||| || || |||||| |||| | | ||| || |||||||||||| ||||| ||
Sbjct 937 GATGTAAATTCAGTGCAATGGGCACCTGATAAGGA-AAGCCGGTTGCTTGCCTCGGCCAG 995
Query 1113 TGATGATGGGATGGTCAAGATTTGGCAGCTTGC 1145
|| || ||||| ||||||||| |||||||
Sbjct 996 CGACGACAAAATGGTTAAGATTTGGAAGCTTGC 1028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51802733200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5