BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26070.1
Length=1055
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481464 jgi|Araly1|481464|fgenesh2_kg.4__524__AT2G26070.1 1587 0.0
> Ahg481464 jgi|Araly1|481464|fgenesh2_kg.4__524__AT2G26070.1
Length=1041
Score = 1587 bits (859), Expect = 0.0
Identities = 989/1050 (94%), Gaps = 15/1050 (1%)
Strand=Plus/Plus
Query 12 AAGGTTCATTGTACCTTTCTCCATTGTCTTCAATGAATTCCTAAAACTAGAAGAAGCGTT 71
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGGTTCATTGTACCTTTCTCCAATGTCTTCAATGAATTCCTAAAACTAGAAGAAGCGTT 60
Query 72 ACTTTAGAAAACCAATTATAAAAATCTCCTC-TTTCTTCATCAAATTCCACAAAG---CA 127
|||||| |||||| ||||||||||||||||| |||| |||||||| ||||||||| ||
Sbjct 61 ACTTTACAAAACCCATTATAAAAATCTCCTCTTTTC-TCATCAAAATCCACAAAGCATCA 119
Query 128 TCAGTTTCTTCTCCTTCTCCAAGCTCTCGCATCACTTTCATCGATTTTTC-CTCTCTGCG 186
|||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||
Sbjct 120 TCAGTTTCTTCTCCTTCTCCGAGCTCTCGCATCACTTTCATCG-TTTTTCTTTCTCTGCG 178
Query 187 TCGATCCTTCAGACATCGGCGTCGGAGTTTCCGACAGGAATCTAAAAATGTCACGTGGAA 246
| ||||||| || | ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 179 TTGATCCTTAAGCCGTCGGCGTCGGAGTTTCCGACAGGAATCTACAAATGTCACGTGGAA 238
Query 247 GAGGAGTTCCTATGATGGACCTGAAACGAAGTTATGATGTTGAAGACAGGGTGGTGTCCG 306
||||||||||||||| |||||||||||||||||||||||||||| | | || |||| |
Sbjct 239 GAGGAGTTCCTATGAAGGACCTGAAACGAAGTTATGATGTTGAA-A-ACGG-GGTG---G 292
Query 307 TGTCTATACCATCAATAATCGAAGCTGATGAGGCTGATCTGTGGCCACTACCTGAGATTG 366
| ||||| ||||| |||||||||| |||||| |||||||| |||||||||||||||||||
Sbjct 293 TCTCTATGCCATCCATAATCGAAGATGATGATGCTGATCTATGGCCACTACCTGAGATTG 352
Query 367 ATACCAAGAAGTCGAAATTTCCTTGCTGTATAGTTTGGACTCCTCTTCCTGTTGTCTCTT 426
||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 353 ATACCAAAAAGTCTAAATTCCCTTGCTGTATAGTTTGGACTCCTCTTCCTGTTGTCTCTT 412
Query 427 GGTTGGCTCCTTTCATTGGTCATATTGGACTTTGCAGAGAAGATGGAGTCATTTTGGACT 486
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 413 GGTTGGCTCCCTTCATTGGTCATATAGGACTTTGCAGAGAAGATGGAGTCATTTTGGACT 472
Query 487 TTGCTGGATCTAACTTCATCAATGTTGATGATTTTGCATTTGGTCCTCCTGCTCGCTATC 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 473 TTGCTGGATCTAACTTCATCAATGTTGATGATTTTGCATTTGGTCCTCCTGCTCGGTATC 532
Query 547 TCCAACTCGATAGAACCAAGTGTTGCTTACCACCAAATATGGGTGGACATACTTGCAAGT 606
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 533 TCCAACTCGATAGAACCAAGTGTTGCTTACCACCAAATTTGGGTGGGCATACTTGCAAGT 592
Query 607 ATGGATTCAAACACACCGACTTTGGAACAGCGCGTACATGGGATAATGCACTGAGCTCGA 666
||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 593 ATGGATTCACACACACCGATTTTGGAACCGCGCGTACATGGGATAATGCACTGAGCTCGA 652
Query 667 GCACACGTAGCTTTGAGCATAAAACCTACAACATCTTCACTTGTAACTGCCATTCGTTTG 726
| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 653 GTACACGTAGCTTTGAGCATAAAACCTACAACCTCTTCACCTGTAACTGCCATTCGTTTG 712
Query 727 TTGCAAACTGTTTGAACCGTCTTTGCTATGGTGGCTCAATGGAGTGGAATATGGTGAATG 786
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 TTGCAAACTGTCTCAACCGTCTTTGCTATGGTGGCTCAATGGAGTGGAATATGGTGAATG 772
Query 787 TTGCTATTTTACTTATGATCAAAGGGAAATGGATCAATGGTTCATCAGTAGTCCGCTCGT 846
|||||||||||||||||||||||||||||||||||| || ||||||||||||||| || |
Sbjct 773 TTGCTATTTTACTTATGATCAAAGGGAAATGGATCAGTGTTTCATCAGTAGTCCGGTCAT 832
Query 847 TTCTGCCATGTGCTGTGGTCACGTCTTTGGGGGTGGTGCTTGTCGGCTGGCCATTCCTCA 906
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 833 TTCTGCCATGTGCTGTGGTCACGTCTTTGGGGGTAGTGCTTGTCGGCTGGCCATTCCTGA 892
Query 907 TCGGTCTCTCTTCGTTCTCGCTACTACTCTTTGCCTGGTTCATAATTGCTACTTACTGTT 966
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 TCGGTCTCTCCTCGTTCTCGCTACTACTCTTTGCCTGGTTCATAATTGCTACTTACTGTT 952
Query 967 TTAAGAACATAATTACTTGAAGCAGTATGAGAGAAATATAAATATGATGTA-TCACCAAA 1025
|||| ||||| |||||||||||||||| ||||||||||||||||| ||||| | ||||||
Sbjct 953 TTAACAACATTATTACTTGAAGCAGTAAGAGAGAAATATAAATATAATGTACT-ACCAAA 1011
Query 1026 ATTATGTTAATCTTAAGAATTGTTCTCTTT 1055
||||||||||||||||||||||||||||||
Sbjct 1012 ATTATGTTAATCTTAAGAATTGTTCTCTTT 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39266604510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5