BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26100.1
Length=1502
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932821 jgi|Araly1|932821|scaffold_400809.1 1792 0.0
> Ahg932821 jgi|Araly1|932821|scaffold_400809.1
Length=1144
Score = 1792 bits (970), Expect = 0.0
Identities = 1099/1159 (95%), Gaps = 18/1159 (2%)
Strand=Plus/Plus
Query 60 CCAACCTCAGATTTACGATAATGCCACTATTCTCCCACCGCTTCACCACCGCATCTTCTT 119
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 CCAACCACAGATTTACGATAATGCCACTCTTCTCCCACCGCTTCACCACCGCATCTTCTT 60
Query 120 CTTCCCCGGCGTCTCCTTCTTACTACAATAAACCCTCTTCGAAAACCCATAAACCAAACT 179
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 61 CTTCTCCGGCGTCTCCTTCGTACTACAATAAACCCTCTTCGAAAACCCACAAACCAAA-- 118
Query 180 CTTCTTCTTCTTCTTATACTTCGTCTCGTATTCATGTAGCTATCATATTCTTCTCCCTTG 239
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 ---C-TCTTCTTCTTATGCTTCGTCTCGTATTCATGTAGCTATCATATTCTTCTCCCTTG 174
Query 240 TCTCTGTTTTCATCGGAGTCGCCGGAACTATCTTCGCACTCTCCTCCACCGGTCCTGCTT 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 175 TCTCTGTTTTCATCGGAGTCGCCGGAACTATCTTCGCACTCTCCTCCACCGGTCCTGCGT 234
Query 300 CTGTTTATCGATGCGGCGGATCTAAAGACACTTCTCGGGTTGTGTCTGCTTCAAGAAAGC 359
|||||||| ||||||| |||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 235 CTGTTTATAGATGCGGTGGATCTAAAGACACTTCTCGGGTTGTTTCTACTTCAAGAAAGC 294
Query 360 TCGGAGGAGATGGTGGTAATAATGGTGTTGTTGTTGAAAGACGAAAGCTTTTAGGGTTTG 419
| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 295 TTGGAGGAGATGGTGGTAAT---GGTGTTGTTG---AAAGACGAAAGCTTTTAGGGTTTG 348
Query 420 TTGGGATCCAGACTGGTTTTGATTCCGGTGATCGTAGAACTGCTTTGAGAAGTACTTGGT 479
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 349 TTGGGATCCAGACTGGTTTTGATTCCGGTGATCGTAGAACTGCTTTGAGAAGCACTTGGT 408
Query 480 TCCCTTCTGATCCTGATTCTCTTCTAAGGTTGGAACAAGCGACTGGATTAGCTTTTAGAT 539
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 409 TCCCTTCTGATCCCGATTCTCTTTTAAGGTTGGAACAAGCGACTGGATTAGCTTTTAGAT 468
Query 540 TCGTCATTGGAAAGTCAAAGGATGCCAAA-AAGATGGCTGAGCTTGAGAAGGAGATAAAA 598
||||||| ||| |||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 469 TCGTCATCGGACGGTCAAAGGATGC-AAAGAAGATGGCTGAGCTTGAGAAGGAGATAAAA 527
Query 599 GAGTACAGAGATTTTGTGCTTCTTGATACCGAGGAAGAATATATACGACTTCCATATAAA 658
||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 528 GAGTATAGAGATTTTGTGCTTCTTGATGTCGAGGAAGAATATGTACGACTTCCATATAAA 587
Query 659 ACGTTGGC-TTTCTTCAAAGCAGCTTTTAAACTCTTTGAAGCTGATTATTATGTCAAAGC 717
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 ACGTTGGCATTT-TTCAAAGCAGCTTTTAAACTCTTTGAAGCTGATTATTATGTCAAAGC 646
Query 718 CGACGATGACATTTATTTGAGACCAGATCGACTTGCGACGCTTCTTGCCAATGAAAGACT 777
|||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 647 CGACGACGACATTTATCTGAGACCAGATCGACTTGCGACGCTTCTTGCCAAGGAAAGACT 706
Query 778 TCATTCACAGACATACATTGGCTGCATGAAGAAAGGACCAGTTATAACTGACCCTAAACT 837
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 707 TCATTCACAGACATACATTGGTTGCATGAAGAAAGGACCAGTTATAACTGACCCTAAACT 766
Query 838 AAAATGGTACGAGAAACAAGGCAATTTGATTGGAAATGAATACTTTT-TACATGCTTATG 896
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 767 AAAATGGTACGAGAAACAAGGCAATTTGATTGGAAATGAATA-TTTCCTACATGCTTATG 825
Query 897 GACCGATATACGTTCTTTCAGCCGAGATAGTAGCTTCACTTGCAGCAGCTAGGAATGGCA 956
||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||
Sbjct 826 GACCGATATACGTTCTTTCAGCCGAGATAGTGGCTTCAATTGCAGCAGCTCGGAATGGCA 885
Query 957 GTCTGAGAATGTTTAATAATGAAGATGTAACTATCGGATCTTGGATGCTTGCAATGGATG 1016
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 GCCTGAGGATGTTTAATAATGAAGATGTAACTATCGGATCTTGGATGCTTGCAATGGATG 945
Query 1017 TACATCACGAAGACAACCGCGCTTTATGCGATCCGCATTGTTCCCCAAAGTCCATAGCAG 1076
|||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 946 TACATCACGAGGACAACCGTGCTTTATGCGATCCTCATTGTTCCCCAAAGTCCATAGCAG 1005
Query 1077 TTTGGGACATTCCCAAATGCTCAGGGCTTTGTGACCCGGAGAGTCGGTTAAAAGAGCTTC 1136
| ||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1006 TCTGGGACATTCCGAAATGCTCAGGGCTTTGTAACCCGGAGAGTCGGTTAAAGGAGCTTC 1065
Query 1137 ATAAGACGGATATGTGCTCCAAGAGTCCGACATTACCTCCCGATGACATCGATCAGTAGT 1196
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1066 ATAAGACAGATATGTGCTCCAAGAGTCCGACATTGCCTCCCGATGACATCGATCAGTAGT 1125
Query 1197 TTGTTTCAAGAGTTGCCCC 1215
|||||||| ||||||||||
Sbjct 1126 TTGTTTCACGAGTTGCCCC 1144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56221201620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5