BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26110.1
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481467 jgi|Araly1|481467|fgenesh2_kg.4__527__AT2G26110.1 1557 0.0
> Ahg481467 jgi|Araly1|481467|fgenesh2_kg.4__527__AT2G26110.1
Length=1135
Score = 1557 bits (843), Expect = 0.0
Identities = 1083/1189 (91%), Gaps = 56/1189 (5%)
Strand=Plus/Plus
Query 1 ATGTGCTTCTATTTGCTTTCCGaaaaaaaCCAAACGCACCCATCTCCTTCCTCTTCTCCT 60
|||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||
Sbjct 1 ATGTGCTTCTATTTGCTTTCCG-AAAATACCAAACTCACCCATCTCCTTCCTCTTCTCCT 59
Query 61 TTTCTCTCCGAACAAAGAACACAACCAAAACAAAAATCTATGTTAGATATGTCGGAATCT 120
||||||| || || |||||||||||| |||| |||||||||||||| ||||||||||||
Sbjct 60 TTTCTCTTCGGAC-AAGAACACAACC-AAAC--AAATCTATGTTAGACATGTCGGAATCT 115
Query 121 GTACTCACGGCGATGTATAGTTGGTTCACTCCGACAGTTCTCTTCGTCTTCCTCAACCTT 180
||||| ||||||||||||||||||||||| ||||| || || |||||||||||||||||
Sbjct 116 GTACTAACGGCGATGTATAGTTGGTTCACACCGACCGTACTATTCGTCTTCCTCAACCTA 175
Query 181 ATGATTGGTACCATCGCCATTAGCTCATCTTTCTCTTCCAAATCCAACGACCCAAATCAA 240
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 176 ATGATTGGTACTATCGCCATTAGCTCATCTTTCTCTTCCAAAGCCAACGACCCAAATCAA 235
Query 241 ACTCAGATCCAACGCTCTCCTTCCATGATTCATCGTCTCAAATCCATAAACTTCTCTTCT 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 236 ACTCAGATCCAACGCTCTCCTTCCATGATTCATCGCCTCAAATCCATAAACTTCTCTTCT 295
Query 301 TTCACTTCTCCAGACAAGTCTCATCTCGAGTTTCCTCCTTCAACACCTGAAGACAACAGC 360
||||||||||||||||| ||||||||||||||||||||||||||||| | | ||
Sbjct 296 TTCACTTCTCCAGACAATTCTCATCTCGAGTTTCCTCCTTCAACACC------CGA-AG- 347
Query 361 AACAACAACTTTCACCAACCAGCTTCAATCGAACAGAATCAACCATTCTTGTCTAGATCT 420
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 348 -ACAACAACTCTCACCAACCAGCTTCAATCGAACAGAATCAACCGTTCTTGTCTAGATCT 406
Query 421 CCTTCTGTTCTTCACAGAATCAAATCTTTCAATCTTTATAACTACATTTCTCAAGAACCC 480
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 407 CCTTCTGTTCTTCATAGAATCAAATCTTTCAATCTTTACAACTACATTTCTCAAGAACCC 466
Query 481 ACCAATATAATCGAAGCTT-CACCACCGTCGGTGACCGTagagacaaaacaagaacaagt 539
|||||||||||||||| || ||||||||||||||||| ||||| ||||||||| |||
Sbjct 467 ACCAATATAATCGAAG-TTCCACCACCGTCGGTGACCATAGAGTCAAAACAAG---AAG- 521
Query 540 acaagaacaagaagtaaaagaagaacaagaagaagaagaacagagtcttgaagaGGTTTA 599
|||||| |||| | ||||||||||| ||||||||||||||||||||||||||||
Sbjct 522 --AAGAAC---AAGT---ACAAGAACAAGAACAAGAAGAACAGAGTCTTGAAGAGGTTTA 573
Query 600 TAGTAAACTTAATCTAAACCATGTCGCTAGGACAAAATCTGACACTGAACCAGCTGCTGG 659
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 TAGTAAACTCAATCTAAACCATGTCGCTAGGACAAAATCTGACACTGAACCAGCTGCTGG 633
Query 660 AATTAGACCTCCGAAGCTTCCAAAGAAGATGAAAAAATCTGCTAGTACCAAATCTCCGTT 719
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 634 AATTAGACCTCCTAAGCTTCCAAAGAAGATGAAGAAATCTGCTAGTACCAAATCTACATT 693
Query 720 CTCTCACTTTCAAGAAGATGAAATCTCCGTGGAGGCTCGCCGTCCTGCGACGGTGAAAGT 779
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 694 CTCTCACTTTCAAGAAGATGAAATCTCCGTTGAGGCTCGCCGTCCTGCGACGGTGAAAGC 753
Query 780 GCCGAGAGTTACGACGGTGGAAGAAGCTGATGAAGAAGTAGATGCAAAAGCTGATGACTT 839
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 754 ACCGAGAGTTACGACGGTGGAAGAAGCTGATGAAGAAGTAGATGCTAAAGCTGATGACTT 813
Query 840 TATCAATCGATTCAAGCATCAGTTGAAGTTACAGAGAATTGATTCCATCACTAAGTATAA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 TATCAATCGATTCAAGCATCAGTTGAAGTTACAGAGAATTGATTCCATCACTAAGTATAA 873
Query 900 GGAGATGGTGAAGAAAAGAAACGACAAGTGAAAAATTGATAAAAAGAAAACTCTTGAGGC 959
||||||||||||||||||||||||||||||| |||| | | |||| | |
Sbjct 874 GGAGATGGTGAAGAAAAGAAACGACAAGTGATAAAT-GTT-----------TCTTAA--C 919
Query 960 TGTTTCTTAACTATGTATTAATTTATGGACCTTTTTGAAAATTCTTAATTTTGGTTAGCT 1019
| | | |||| | | ||| ||||||||||||||||||||| ||||||||||||
Sbjct 920 TATGTATTAA-T-T-TAT--------GGACCTTTTTGAAAATTCTTAGTTTTGGTTAGCT 968
Query 1020 TTTTTCAATTTCACATCTTCACTGTAGATTATCCACTGGCTTTTTGTTGCCGGAACTGTT 1079
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 TTTCTCAATTTCACATCTTCACTGTAGATTATCCACTGGCTTTTTGTTGCCGGAACTGTT 1028
Query 1080 TCTCTTTTTTCTTTATAACAAGAAAATGAAAATTCGAGAATCTTTATCTTTGTACATGAC 1139
|||| |||| |||||| ||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1029 TCTCGTTTT-CTTTATGACAAGAAAAAGAAAATTCGAGAATCATTATCTTTGTACATGAC 1087
Query 1140 CCAAGGTGTT-TGTAATAAATTTTCGAAACGATGATTCAAGAATCTTGG 1187
| |||| ||| ||||||||||||| |||| |||||||| |||||||||
Sbjct 1088 CGAAGG-GTTCTGTAATAAATTTTAGAAATAATGATTCAGGAATCTTGG 1135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44451321222
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5