BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26130.1
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900120 jgi|Araly1|900120|Al_scaffold_0004_770 1142 0.0
Ahg900122 jgi|Araly1|900122|Al_scaffold_0004_772 970 0.0
> Ahg900120 jgi|Araly1|900120|Al_scaffold_0004_770
Length=924
Score = 1142 bits (618), Expect = 0.0
Identities = 831/931 (89%), Gaps = 26/931 (3%)
Strand=Plus/Plus
Query 286 ATGGGAATATCCACTCCTAAGCAAGAAAGCATTGCCTTGCTACTGCGTGATGTGCAAGGC 345
||||| | || ||||||| ||||||||| ||||||||||||| | |||||||||||||||
Sbjct 1 ATGGGGAGATTCACTCCTGAGCAAGAAAACATTGCCTTGCTAATTCGTGATGTGCAAGGC 60
Query 346 ATCAGAAA-ATATTTGACTTCTAGCATCCCTGTTATGTTGACTCAAAATCAGTCTAATTT 404
|||||||| | ||||||| ||||||||||||||||||||||||| || ||| ||||||||
Sbjct 61 ATCAGAAACA-ATTTGACGTCTAGCATCCCTGTTATGTTGACTCTAAGTCAATCTAATTT 119
Query 405 AGCCTACGATTTTGCGATAGAAGCAATCTCTTCTGAGATCATCATAGATATTCCTGCTCA 464
|||||||| |||| || ||||||||||||||||| |||||||||||||||||| ||||
Sbjct 120 TGCCTACGAACTTGCAATTGAAGCAATCTCTTCTGATATCATCATAGATATTCCTCCTCA 179
Query 465 GAAAGAAACTTGCAATATATGTTTGAACGATGACATCAATGCTGATCAGATGTTTTCCGT 524
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 180 GAAAGAGACTTGCAATATATGTTTGAACGATGACATCAATGCTGATCAGATGTTTTCGGT 239
Query 525 TGATAAAAGTGGTCATATGTGTTGTTCTGAATGTGTGAAACGACATATAGAGGTGAGACT 584
|||||| |||||||||||| |||||| ||||| || ||||||||||||||||||| |||
Sbjct 240 TGATAATTGTGGTCATATGTTTTGTTCCGAATGCGTTAAACGACATATAGAGGTGAAACT 299
Query 585 ACTTGAAGGAAGTTTGAT-AACATGTCCTCATTATCGTTGCAATTCTCTGCTGACTTCTG 643
||| || ||||||||||| | | ||||||||||||| ||||| ||||||||||| |||||
Sbjct 300 ACTAGAGGGAAGTTTGATCAGC-TGTCCTCATTATCTTTGCAGTTCTCTGCTGAGTTCTG 358
Query 644 --TTCGTTGTGGCAACCTTTTAACACCTAAACTAAATA-AGATGTGGGAGCAAAAGACTA 700
|| ||||| |||| |||| || ||||||||||| | ||||||||||| |||||||||
Sbjct 359 AATT--TTGTGTCAACATTTTGACTCCTAAACTAAA-AGAGATGTGGGAGAAAAAGACTA 415
Query 701 AAGATGAGTTGATTCCTGTAATGGATAGAGTTTATTGCCCAAACCCGAGGTGCTCGACTT 760
|||| || ||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 416 AAGAGGACTTGATTCCTGTAACGAATAGAGTTTATTGCCCAAACCCGAGGTGCTCGACTT 475
Query 761 TAATGTCGGAAACCGAGCTCTCTGGACTTAACATTGGAGTGAGGAGATGCTGTGTAAAAT 820
|||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||
Sbjct 476 TAATGTCGGAAACCGAGCTCTCTGGACTTATTATTGGAGTTAGGATATGCTGTGTAAAAT 535
Query 821 GTGGCGAACCCTTTTGCGTCAAGTGCAAAGTTTCGTGGCATAATAACTTGTCGTGCGACG 880
||||||||||||||||| |||| |||||||| |||||||||||||||| |||||||| |
Sbjct 536 GTGGCGAACCCTTTTGCATCAACTGCAAAGTACCGTGGCATAATAACTTTTCGTGCGAGG 595
Query 881 AGTACAAGACG-TTACATCCAAATCCTACAGAAAACGATGGAAGGCTAAGAGATCTAGCG 939
||||||||| | || ||||||||| |||||||||||||||||| ||||| ||||||||||
Sbjct 596 AGTACAAGA-GATTGCATCCAAATGCTACAGAAAACGATGGAAAGCTAAAAGATCTAGCG 654
Query 940 AATGAGAAATCGTGGCGTCAATGCAGCAAGTGTAAACACATGATTGAACTTTCTTCTGGA 999
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 AATGAGAAATTGTGGCGTCAATGCAGCAAGTGTAAACACATGATTGAACTTTCTTCTGGA 714
Query 1000 TGCATCAGTGTAGTTTGCAGATGTGGACAT-ACGTTTTGCTACCAATGTGGAGCCGATGC 1058
||| |||||||| ||||||||||||||||| | ||||||||||| |||||||||||||||
Sbjct 715 TGCGTCAGTGTAATTTGCAGATGTGGACATGA-GTTTTGCTACCGATGTGGAGCCGATGC 773
Query 1059 TGGAGATTGCTTTCATGGTCTTGGC--AG-----A--GATGATCTGGATTTGACACAATG 1109
||||||||||| |||||||| |||| | | ||||||||| |||||||| |||
Sbjct 774 TGGAGATTGCTCTCATGGTCATGGCTTACCTCTTACAGATGATCTGCTTTTGACACCATG 833
Query 1110 TTGTGGTTCGTGCTGCTGTTTTGTTTTCTTTTTGGTGATAATTGCTATTGT-G--GTTAC 1166
|||| || |||||||||| |||||||||||||||||||||||||||||| | |||||
Sbjct 834 CTGTGCTTTTTGCTGCTGTTCTGTTTTCTTTTTGGTGATAATTGCTATTGTTGTTGTTAC 893
Query 1167 TATTATATTACTCGTAAGACGGTTCTCGTAA 1197
||| ||||| ||| |||||||||||||||||
Sbjct 894 TATAATATTCCTCATAAGACGGTTCTCGTAA 924
> Ahg900122 jgi|Araly1|900122|Al_scaffold_0004_772
Length=759
Score = 970 bits (525), Expect = 0.0
Identities = 668/738 (91%), Gaps = 6/738 (1%)
Strand=Plus/Plus
Query 283 GTCATGGGAATATCCACTCCTA-AGCAAGAAAGCATTGCCTTGCTACTGCGTGATGTGCA 341
|||| ||| | |||||| || | ||||||||| ||||||||||||| ||| |||||||||
Sbjct 22 GTCACGGGGAGATCCACGCC-AGAGCAAGAAAACATTGCCTTGCTAATGCTTGATGTGCA 80
Query 342 AGGCATCAGAAAATATTTGACTTCTAGCATCCCTGTTATGTTGACTCAAAATCAGTCTAA 401
|||||||||||||| |||||| ||||||||||||||| ||||||||| | | || || ||
Sbjct 81 AGGCATCAGAAAATCTTTGACATCTAGCATCCCTGTTCTGTTGACTCGAGACCAATCAAA 140
Query 402 TTTAGCCTACGATTTTGCGATAGAAGCAATCTCTTCTGAGATCATCATAGATATTCCTGC 461
||| |||||||| ||||| |||||||||||||||||||| |||||||||||||||||| |
Sbjct 141 TTTTGCCTACGACTTTGCAATAGAAGCAATCTCTTCTGATATCATCATAGATATTCCTTC 200
Query 462 TCAGAAAGAAACTTGCAATATATGTTTGAACGATGACATCAATGCTGATCAGATGTTTTC 521
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 201 TCAGAAAGAGACTTGCAATATCTGTTTGAACGATGACATCAATGCTGATCAGATGTTTTC 260
Query 522 CGTTGATAAAAGTGGTCATATGTGTTGTTCTGAATGTGTGAAACGACATATAGAGGTGAG 581
||||||||| |||||||||||| |||||||||||| || ||||||||||||||||||||
Sbjct 261 TGTTGATAAATGTGGTCATATGTTTTGTTCTGAATGCGTTAAACGACATATAGAGGTGAG 320
Query 582 ACTACTTGAAGGAAGTTTGATAACATGTCCTCATTATCGTTGCAAT-TCTCTGCTGACTT 640
|||||| || ||||||||||||| ||||||| ||||||||||| || |||||||||||||
Sbjct 321 ACTACTAGAGGGAAGTTTGATAAGATGTCCTGATTATCGTTGC-ATATCTCTGCTGACTT 379
Query 641 CTGTTCGTTGTGGCAACCTTTTAACACCTAAACTAAATA-AGATGTGGGAGCAAAAGACT 699
|| |||||| ||||||||| |||||||||||||| | |||||||||| |||||||||
Sbjct 380 ATGGAAGTTGTGTCAACCTTTTGACACCTAAACTAAA-AGAGATGTGGGAACAAAAGACT 438
Query 700 AAAGATGAGTTGATTCCTGTAATGGATAGAGTTTATTGCCCAAACCCGAGGTGCTCGACT 759
||||| || | || || |||| | |||||||||||||||||||||||||||||||||||
Sbjct 439 AAAGAAGACTCCATCCCGGTAACGAATAGAGTTTATTGCCCAAACCCGAGGTGCTCGACT 498
Query 760 TTAATGTCGGAAACCGAGCTCTCTGGACTTAACATTGGAGTGAGGAGATGCTGTGTAAAA 819
||||||||||||||||||||||||| ||||| ||||||| | ||||||||||||||||||
Sbjct 499 TTAATGTCGGAAACCGAGCTCTCTGAACTTATCATTGGATTTAGGAGATGCTGTGTAAAA 558
Query 820 TGTGGCGAACCCTTTTGCGTCAAGTGCAAAGTTTCGTGGCATAATAACTTGTCGTGCGAC 879
|| ||||||||||||||| |||||||||||| |||||||||||||||||| |||||||
Sbjct 559 TGCGGCGAACCCTTTTGCACCAAGTGCAAAGTACCGTGGCATAATAACTTGTTGTGCGAC 618
Query 880 GAGTACAAGACGTTACATCCAAATCCTACAGAAAACGATGGAAGGCTAAGAGATCTAGCG 939
||||||||| |||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 619 CAGTACAAGAGGTTACATCCAAATCCTACAGAAAACGATGGAAAGCTAAAAGGTCTAGCG 678
Query 940 AATGAGAAATCGTGGCGTCAATGCAGCAAGTGTAAACACATGATTGAACTTTCTTCTGGA 999
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 679 AATGAGAAATCGTGGCGTCAATGCAGCAAGTGTAAACACATGATTGAACGTTCTTCTGGA 738
Query 1000 TGCATCAGTGTAGTTTGC 1017
||| |||||||| |||||
Sbjct 739 TGCCTCAGTGTAATTTGC 756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44680058724
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5