BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G26130.1 Length=1197 Score E Sequences producing significant alignments: (Bits) Value Ahg900120 jgi|Araly1|900120|Al_scaffold_0004_770 1142 0.0 Ahg900122 jgi|Araly1|900122|Al_scaffold_0004_772 970 0.0 > Ahg900120 jgi|Araly1|900120|Al_scaffold_0004_770 Length=924 Score = 1142 bits (618), Expect = 0.0 Identities = 831/931 (89%), Gaps = 26/931 (3%) Strand=Plus/Plus Query 286 ATGGGAATATCCACTCCTAAGCAAGAAAGCATTGCCTTGCTACTGCGTGATGTGCAAGGC 345 ||||| | || ||||||| ||||||||| ||||||||||||| | ||||||||||||||| Sbjct 1 ATGGGGAGATTCACTCCTGAGCAAGAAAACATTGCCTTGCTAATTCGTGATGTGCAAGGC 60 Query 346 ATCAGAAA-ATATTTGACTTCTAGCATCCCTGTTATGTTGACTCAAAATCAGTCTAATTT 404 |||||||| | ||||||| ||||||||||||||||||||||||| || ||| |||||||| Sbjct 61 ATCAGAAACA-ATTTGACGTCTAGCATCCCTGTTATGTTGACTCTAAGTCAATCTAATTT 119 Query 405 AGCCTACGATTTTGCGATAGAAGCAATCTCTTCTGAGATCATCATAGATATTCCTGCTCA 464 |||||||| |||| || ||||||||||||||||| |||||||||||||||||| |||| Sbjct 120 TGCCTACGAACTTGCAATTGAAGCAATCTCTTCTGATATCATCATAGATATTCCTCCTCA 179 Query 465 GAAAGAAACTTGCAATATATGTTTGAACGATGACATCAATGCTGATCAGATGTTTTCCGT 524 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 180 GAAAGAGACTTGCAATATATGTTTGAACGATGACATCAATGCTGATCAGATGTTTTCGGT 239 Query 525 TGATAAAAGTGGTCATATGTGTTGTTCTGAATGTGTGAAACGACATATAGAGGTGAGACT 584 |||||| |||||||||||| |||||| ||||| || ||||||||||||||||||| ||| Sbjct 240 TGATAATTGTGGTCATATGTTTTGTTCCGAATGCGTTAAACGACATATAGAGGTGAAACT 299 Query 585 ACTTGAAGGAAGTTTGAT-AACATGTCCTCATTATCGTTGCAATTCTCTGCTGACTTCTG 643 ||| || ||||||||||| | | ||||||||||||| ||||| ||||||||||| ||||| Sbjct 300 ACTAGAGGGAAGTTTGATCAGC-TGTCCTCATTATCTTTGCAGTTCTCTGCTGAGTTCTG 358 Query 644 --TTCGTTGTGGCAACCTTTTAACACCTAAACTAAATA-AGATGTGGGAGCAAAAGACTA 700 || ||||| |||| |||| || ||||||||||| | ||||||||||| ||||||||| Sbjct 359 AATT--TTGTGTCAACATTTTGACTCCTAAACTAAA-AGAGATGTGGGAGAAAAAGACTA 415 Query 701 AAGATGAGTTGATTCCTGTAATGGATAGAGTTTATTGCCCAAACCCGAGGTGCTCGACTT 760 |||| || ||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 416 AAGAGGACTTGATTCCTGTAACGAATAGAGTTTATTGCCCAAACCCGAGGTGCTCGACTT 475 Query 761 TAATGTCGGAAACCGAGCTCTCTGGACTTAACATTGGAGTGAGGAGATGCTGTGTAAAAT 820 |||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||| Sbjct 476 TAATGTCGGAAACCGAGCTCTCTGGACTTATTATTGGAGTTAGGATATGCTGTGTAAAAT 535 Query 821 GTGGCGAACCCTTTTGCGTCAAGTGCAAAGTTTCGTGGCATAATAACTTGTCGTGCGACG 880 ||||||||||||||||| |||| |||||||| |||||||||||||||| |||||||| | Sbjct 536 GTGGCGAACCCTTTTGCATCAACTGCAAAGTACCGTGGCATAATAACTTTTCGTGCGAGG 595 Query 881 AGTACAAGACG-TTACATCCAAATCCTACAGAAAACGATGGAAGGCTAAGAGATCTAGCG 939 ||||||||| | || ||||||||| |||||||||||||||||| ||||| |||||||||| Sbjct 596 AGTACAAGA-GATTGCATCCAAATGCTACAGAAAACGATGGAAAGCTAAAAGATCTAGCG 654 Query 940 AATGAGAAATCGTGGCGTCAATGCAGCAAGTGTAAACACATGATTGAACTTTCTTCTGGA 999 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 655 AATGAGAAATTGTGGCGTCAATGCAGCAAGTGTAAACACATGATTGAACTTTCTTCTGGA 714 Query 1000 TGCATCAGTGTAGTTTGCAGATGTGGACAT-ACGTTTTGCTACCAATGTGGAGCCGATGC 1058 ||| |||||||| ||||||||||||||||| | ||||||||||| ||||||||||||||| Sbjct 715 TGCGTCAGTGTAATTTGCAGATGTGGACATGA-GTTTTGCTACCGATGTGGAGCCGATGC 773 Query 1059 TGGAGATTGCTTTCATGGTCTTGGC--AG-----A--GATGATCTGGATTTGACACAATG 1109 ||||||||||| |||||||| |||| | | ||||||||| |||||||| ||| Sbjct 774 TGGAGATTGCTCTCATGGTCATGGCTTACCTCTTACAGATGATCTGCTTTTGACACCATG 833 Query 1110 TTGTGGTTCGTGCTGCTGTTTTGTTTTCTTTTTGGTGATAATTGCTATTGT-G--GTTAC 1166 |||| || |||||||||| |||||||||||||||||||||||||||||| | ||||| Sbjct 834 CTGTGCTTTTTGCTGCTGTTCTGTTTTCTTTTTGGTGATAATTGCTATTGTTGTTGTTAC 893 Query 1167 TATTATATTACTCGTAAGACGGTTCTCGTAA 1197 ||| ||||| ||| ||||||||||||||||| Sbjct 894 TATAATATTCCTCATAAGACGGTTCTCGTAA 924 > Ahg900122 jgi|Araly1|900122|Al_scaffold_0004_772 Length=759 Score = 970 bits (525), Expect = 0.0 Identities = 668/738 (91%), Gaps = 6/738 (1%) Strand=Plus/Plus Query 283 GTCATGGGAATATCCACTCCTA-AGCAAGAAAGCATTGCCTTGCTACTGCGTGATGTGCA 341 |||| ||| | |||||| || | ||||||||| ||||||||||||| ||| ||||||||| Sbjct 22 GTCACGGGGAGATCCACGCC-AGAGCAAGAAAACATTGCCTTGCTAATGCTTGATGTGCA 80 Query 342 AGGCATCAGAAAATATTTGACTTCTAGCATCCCTGTTATGTTGACTCAAAATCAGTCTAA 401 |||||||||||||| |||||| ||||||||||||||| ||||||||| | | || || || Sbjct 81 AGGCATCAGAAAATCTTTGACATCTAGCATCCCTGTTCTGTTGACTCGAGACCAATCAAA 140 Query 402 TTTAGCCTACGATTTTGCGATAGAAGCAATCTCTTCTGAGATCATCATAGATATTCCTGC 461 ||| |||||||| ||||| |||||||||||||||||||| |||||||||||||||||| | Sbjct 141 TTTTGCCTACGACTTTGCAATAGAAGCAATCTCTTCTGATATCATCATAGATATTCCTTC 200 Query 462 TCAGAAAGAAACTTGCAATATATGTTTGAACGATGACATCAATGCTGATCAGATGTTTTC 521 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 201 TCAGAAAGAGACTTGCAATATCTGTTTGAACGATGACATCAATGCTGATCAGATGTTTTC 260 Query 522 CGTTGATAAAAGTGGTCATATGTGTTGTTCTGAATGTGTGAAACGACATATAGAGGTGAG 581 ||||||||| |||||||||||| |||||||||||| || |||||||||||||||||||| Sbjct 261 TGTTGATAAATGTGGTCATATGTTTTGTTCTGAATGCGTTAAACGACATATAGAGGTGAG 320 Query 582 ACTACTTGAAGGAAGTTTGATAACATGTCCTCATTATCGTTGCAAT-TCTCTGCTGACTT 640 |||||| || ||||||||||||| ||||||| ||||||||||| || ||||||||||||| Sbjct 321 ACTACTAGAGGGAAGTTTGATAAGATGTCCTGATTATCGTTGC-ATATCTCTGCTGACTT 379 Query 641 CTGTTCGTTGTGGCAACCTTTTAACACCTAAACTAAATA-AGATGTGGGAGCAAAAGACT 699 || |||||| ||||||||| |||||||||||||| | |||||||||| ||||||||| Sbjct 380 ATGGAAGTTGTGTCAACCTTTTGACACCTAAACTAAA-AGAGATGTGGGAACAAAAGACT 438 Query 700 AAAGATGAGTTGATTCCTGTAATGGATAGAGTTTATTGCCCAAACCCGAGGTGCTCGACT 759 ||||| || | || || |||| | ||||||||||||||||||||||||||||||||||| Sbjct 439 AAAGAAGACTCCATCCCGGTAACGAATAGAGTTTATTGCCCAAACCCGAGGTGCTCGACT 498 Query 760 TTAATGTCGGAAACCGAGCTCTCTGGACTTAACATTGGAGTGAGGAGATGCTGTGTAAAA 819 ||||||||||||||||||||||||| ||||| ||||||| | |||||||||||||||||| Sbjct 499 TTAATGTCGGAAACCGAGCTCTCTGAACTTATCATTGGATTTAGGAGATGCTGTGTAAAA 558 Query 820 TGTGGCGAACCCTTTTGCGTCAAGTGCAAAGTTTCGTGGCATAATAACTTGTCGTGCGAC 879 || ||||||||||||||| |||||||||||| |||||||||||||||||| ||||||| Sbjct 559 TGCGGCGAACCCTTTTGCACCAAGTGCAAAGTACCGTGGCATAATAACTTGTTGTGCGAC 618 Query 880 GAGTACAAGACGTTACATCCAAATCCTACAGAAAACGATGGAAGGCTAAGAGATCTAGCG 939 ||||||||| |||||||||||||||||||||||||||||||| ||||| || ||||||| Sbjct 619 CAGTACAAGAGGTTACATCCAAATCCTACAGAAAACGATGGAAAGCTAAAAGGTCTAGCG 678 Query 940 AATGAGAAATCGTGGCGTCAATGCAGCAAGTGTAAACACATGATTGAACTTTCTTCTGGA 999 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 679 AATGAGAAATCGTGGCGTCAATGCAGCAAGTGTAAACACATGATTGAACGTTCTTCTGGA 738 Query 1000 TGCATCAGTGTAGTTTGC 1017 ||| |||||||| ||||| Sbjct 739 TGCCTCAGTGTAATTTGC 756 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44680058724 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5