BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26135.1
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900120 jgi|Araly1|900120|Al_scaffold_0004_770 510 7e-144
Ahg900123 jgi|Araly1|900123|Al_scaffold_0004_773 401 5e-111
> Ahg900120 jgi|Araly1|900120|Al_scaffold_0004_770
Length=924
Score = 510 bits (276), Expect = 7e-144
Identities = 523/636 (82%), Gaps = 41/636 (6%)
Strand=Plus/Plus
Query 447 GAAAAAGACTTGCACTATCTGTTTCG-ACGATGACATCAATGCTGAT-ATGATGTTTTAT 504
|||| ||||||||| ||| ||||| | |||||||||||||||||||| | ||||||||
Sbjct 180 GAAAGAGACTTGCAATATATGTTT-GAACGATGACATCAATGCTGATCA-GATGTTTTCG 237
Query 505 ATTGATCAA-TGTGGTCATATGTTTTGTTCCGAATGTGTGAAACGACATATTGAGGTGAG 563
||||| || |||||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 238 GTTGAT-AATTGTGGTCATATGTTTTGTTCCGAATGCGTTAAACGACATATAGAGGTGAA 296
Query 564 TCTACTTCAGGGAAGTTTGAT-AACATGTCCT-AGTTATAGGTGCAAATCTAAGCTGACT 621
||||| ||||||||||||| | | |||||| | |||| |||| ||| ||||| |
Sbjct 297 ACTACTAGAGGGAAGTTTGATCAGC-TGTCCTCA-TTATCTTTGCAGTTCTCTGCTGAGT 354
Query 622 TATGGAA-GTTGTGTTAATATTTTGACACCTAAAGTAAAAGAGATGT-GGATACAAAGGA 679
| | ||| |||||| || |||||||| |||||| |||||||||||| ||| | ||| ||
Sbjct 355 TCT-GAATTTTGTGTCAACATTTTGACTCCTAAACTAAAAGAGATGTGGGAGA-AAAAGA 412
Query 680 -TGGGAGAGGA-TTCGATTCCTGTAACGGATAGAGTTTATTGCCCAAACCCGACGTGCTC 737
| |||||| || ||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 413 CT-AAAGAGGACTT-GATTCCTGTAACGAATAGAGTTTATTGCCCAAACCCGAGGTGCTC 470
Query 738 AG-CTTTAATGTCAGTAACCGAGCTCGATCAACTCA-CA--GGAAG-TAAGAGATGCTGT 792
| |||||||||| | |||||||||| | ||| | | || || || || |||||||
Sbjct 471 -GACTTTAATGTCGGAAACCGAGCTCTCTGGACTTATTATTGG-AGTTAGGATATGCTGT 528
Query 793 GTCAAATGCGGTGAATCCTTTTGCATCAAGTGCAAAGTTCCGTGGCATGATAACTTGTCG 852
|| ||||| || ||| ||||||||||||| |||||||| ||||||||| ||||||| |||
Sbjct 529 GTAAAATGTGGCGAACCCTTTTGCATCAACTGCAAAGTACCGTGGCATAATAACTTTTCG 588
Query 853 TGCAAACG-TTACAAAAAG-TTGCATTCAAATCG-TACA-ACAAACGAT-AAACAGCTTA 907
||| | | ||| || || |||||| ||||| | |||| | ||||||| || |||| |
Sbjct 589 TGC-GAGGAGTAC-AAGAGATTGCATCCAAAT-GCTACAGA-AAACGATGGAA-AGCTAA 643
Query 908 ACGAACTAGCAAATCAGGAAAGT-TGGCGTCAATGCAGCAAGTGTAAACATATGATTGAA 966
| || ||||| ||| | |||| | |||||||||||||||||||||||||| |||||||||
Sbjct 644 AAGATCTAGCGAATGA-GAAATTGTGGCGTCAATGCAGCAAGTGTAAACACATGATTGAA 702
Query 967 CTTAC-TCAAGGATGCGTCCGCGTAATTTGCAGATGTGGACATGAGTTTTGCTATGGATG 1025
||| | || ||||||||| | |||||||||||||||||||||||||||||||| ||||
Sbjct 703 CTTTCTTC-TGGATGCGTCAGTGTAATTTGCAGATGTGGACATGAGTTTTGCTACCGATG 761
Query 1026 TGGAGCTGATGCTGGATG-TTGCTCTCATGGTCATG 1060
|||||| ||||||||| | |||||||||||||||||
Sbjct 762 TGGAGCCGATGCTGGA-GATTGCTCTCATGGTCATG 796
> Ahg900123 jgi|Araly1|900123|Al_scaffold_0004_773
Length=555
Score = 401 bits (217), Expect = 5e-111
Identities = 318/365 (87%), Gaps = 14/365 (4%)
Strand=Plus/Plus
Query 420 GATAGATGTGCCTGCTCTGTTTCATCCGAAAAAGACTTGCACTATCTGTTTCGACGATGA 479
||||||||||||||| |||||||||||||||| |||||||| ||| ||||||||||||||
Sbjct 198 GATAGATGTGCCTGCGCTGTTTCATCCGAAAATGACTTGCAGTATTTGTTTCGACGATGA 257
Query 480 CATCAATGCTGAT-ATGATGTTTTATATTGATCA-ATGTGGTCATATGTTTTGTTCCGAA 537
||||||||| ||| | |||||||| | ||||| | |||| ||||| ||||||||||||||
Sbjct 258 CATCAATGCGGATCA-GATGTTTTCTGTTGAT-ATATGTTGTCATGTGTTTTGTTCCGAA 315
Query 538 TGTGTGAAACGACATATTGAGGTGAGTCTACTTCAG-GGA-AGTTTGATAACATGTCCT- 594
||||||| ||||||||| |||||||| ||| | | ||| | || | | |||||||||
Sbjct 316 TGTGTGAGACGACATATAGAGGTGAGACTA-GCCGGTGGATA-TTCGGTGACATGTCCTC 373
Query 595 AGTTATAGGTGCAAATCTAAGCTGACTTATGGAAGTTGTGTTAATATTTTGACACCTAAA 654
| ||| | |||||||||||||||||||||||| ||||||| || |||||||||||||||
Sbjct 374 A-ATATCGCTGCAAATCTAAGCTGACTTATGGACGTTGTGTCAACATTTTGACACCTAAA 432
Query 655 GTAAAAGAGATGT-GGATACAAAGGATGGGAGAGGATTCGATTCCTGTAACGGATAGAGT 713
|||||||||||| ||| ||||||||| ||||||| |||||| |||||||||||||||
Sbjct 433 CTAAAAGAGATGTGGGA-ACAAAGGATCAGAGAGGACGCGATTCATGTAACGGATAGAGT 491
Query 714 TTATTGCCCAAACCCGACGTGCTCAGCTTTAATGTCAGTAACCGAGCTCG-ATCAACTCA 772
||| ||||||||||||||||||||||||||||||||| |||||||||| | |||||||||
Sbjct 492 TTACTGCCCAAACCCGACGTGCTCAGCTTTAATGTCACTAACCGAGCT-GTATCAACTCA 550
Query 773 CAGGA 777
| |||
Sbjct 551 CTGGA 555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43078896210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5