BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26150.1
Length=1391
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481471 jgi|Araly1|481471|fgenesh2_kg.4__531__AT2G26150.1 1703 0.0
> Ahg481471 jgi|Araly1|481471|fgenesh2_kg.4__531__AT2G26150.1
Length=1218
Score = 1703 bits (922), Expect = 0.0
Identities = 1131/1230 (92%), Gaps = 22/1230 (2%)
Strand=Plus/Plus
Query 172 AAAATGGAAGAACTGAAAGTGGAAATGGAGGAAGAAACGGTGACGTTTACTGGTTCTGTA 231
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 AAAATGGAGGAACTGAAAGTGGAAATGGAGGAAGAAACGGTGACGTTTACTGGTTCAGTG 60
Query 232 GCGGCTTCTTCATCTGTAGGATCCTCTTCCTCTCCTAGACCAATGGAAGGG-CTTAACGA 290
|| |||||||| ||||||||||| || || ||||| |||||||||| |||| || |||||
Sbjct 61 GCTGCTTCTTCGTCTGTAGGATCGTCCTCGTCTCCGAGACCAATGG-AGGGTCTGAACGA 119
Query 291 AACAGGGCCACCACCGTTTCTGACTAAGACTTACGAAATGGTGGAAGATCCGGCGACGGA 350
| ||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 120 GATAGGACCACCGCCGTTTCTGACTAAGACTTACGAAATGGTGGAGGATCCGGCGACTGA 179
Query 351 CACGGTGGTTTCTTGGAGTAATGGTCGTAACAGCTTTGTGGTGTGGGATTCTCATAAGTT 410
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CACTGTGGTTTCTTGGAGTAATGGTCGTAACAGCTTTGTGGTGTGGGATTCTCATAAGTT 239
Query 411 CTCAACAACTCTCCTTCCACGTTACTTCAAGCATAGCAATTTCTCAAGTTTTATTCGTCA 470
|||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 240 CTCAACAACTCTCCTTCCTCGTTACTTCAAGCATAGGAATTTCTCGAGTTTTATTCGTCA 299
Query 471 GCTCAATACTTATGGATTCAGAAAGATTGATCCAGATAGATGGGAATTTGCAAATGAAGG 530
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 300 GCTTAATACTTATGGATTCAGAAAGATTGATCCAGATAGATGGGAATTTGCGCATGAAGG 359
Query 531 GTTTTTAGCAGGACAAAAGCATCTCTTGAAGAACATCAAAAGAAGGAGGAACATGGGTTT 590
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 360 GTTTTTAGCAGGACAGAAGCATCTCTTGAAGAACATTAAAAGAAGGAGGAACATGGGAAT 419
Query 591 GCAGAATGTGAATCAGCAAGGATCTGGGATGTCATGTGTTGAGGTTGGGCAATAC-GGTT 649
|||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||
Sbjct 420 GCAGAATGTGAATCAGCAAGGATCTGGGATGTCATGTGTTGAAGTCGGGCAATACGGGTT 479
Query 650 TCGACGGGGAGGTTGAGAGGTTGAAGAGGGATCATGGTGTGCTTGTAGCTGAGGTAGTTA 709
| |||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 480 T-GACGAGGAGGTGGAGAGGTTGAAGAGGGATCATAGTGTGCTTGTAGCTGAGGTAGTTA 538
Query 710 GGTTGAGGCAACAGCAACACAGCTCCAAGAGTCAAGTTGCAGCTATGGAGCAACGGTTGC 769
|| |||| || |||||||| || |||||||||||||||||||| ||||| ||||||||||
Sbjct 539 GGCTGAGACAGCAGCAACATAGTTCCAAGAGTCAAGTTGCAGCGATGGAACAACGGTTGC 598
Query 770 TTGTTACTGAGAAGAGACAGCAGCAGATGATGACGTTCCTTGCCAAGGCGTTGAACAATC 829
|||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 599 TTGTTACTGAGAAGAGACAGCAGCAGATGATGACATTCCTCGCTAAGGCGTTGAACAATC 658
Query 830 CGAACTTTGTTCAGCAGTTTGCGGTT-ATGAGTAAAGAGAAGAAGAGTTTGTTTGGTTTG 888
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 659 CGAACTTTGTTCAGCAGTTTGC-TTTGATGAGTAAAGAGAAGAAGAGTTTGTTTGGTTTG 717
Query 889 GATGTGGGGAGGAAACGGAGGCTTACTTCTACTCCAAGCTTGGGGACTATGGAGGAGAAT 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GATGTGGGGAGGAAACGGAGGCTTACTTCTACTCCAAGCTTGGGGACTATGGAGGAGAAT 777
Query 949 TTGTTACATGATCAAGAGTTTGATAGAATGAAGGATGATATGGAAATGTTGTTCGCTGCA 1008
||||| |||||||||||||||||||||||||| ||||||||||| | ||| ||||||||
Sbjct 778 TTGTTGCATGATCAAGAGTTTGATAGAATGAAAGATGATATGGAGACGTTACTCGCTGCA 837
Query 1009 GCAATCGATGATGAGGCGAATAATTCGATGCCTACT-AAGGAGGAACAATGTTTGGAGGC 1067
|| ||||| ||||| ||| ||||| |||||||| | ||||||||||| ||||| |||||
Sbjct 838 GCTATCGACAATGAGTCGAGTAATTTGATGCCTA-TGAAGGAGGAACAGTGTTTTGAGGC 896
Query 1068 TATGAATGTGATGATGAGAGATGGTAATTTGGAAGCAGCGTTGGATGTGAAAGTGGAAGA 1127
|||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 897 TATGAATGTGATGATGGGAGATGGTAATCTGGAAGCAGAGTTGGATGTGAAAGTGGAAGA 956
Query 1128 TTTGGTTGGTTCGCCTTTGGATTGGGACAGCCAAGATCTACATGACATGGTTGATCAAAT 1187
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 957 TTTGGTTGGTTCACCTTTGGATTGGGACAGTCAAGATCTACATGACATGGTTGATCAAAT 1016
Query 1188 GGGTTTTCTTGGTTCGGAACCTTAACTATACGGTATTAACACATCTACTTGT-TGCGGTC 1246
|| |||||||||||| || |||| ||| ||||| | ||||||||||||||| | | ||
Sbjct 1017 GGTTTTTCTTGGTTCAGAGCCTTGACTTTACGGC-TGAACACATCTACTTGTCT-C--TC 1072
Query 1247 TAAGTTATGGTAA-TGCTACCACTTTT-ATTTACTAGTTGAATTGTTTGTTTGTTTGTTT 1304
|||||| |||||| | ||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1073 TAAGTTGTGGTAACTACTACCACTTTTTATTTACTGGTTGAATTGTTTGTTTGTTTGTTT 1132
Query 1305 TGACTCAAGGAAGAGTCATTGAGTGTGGTTTGTTGTACATTTG-T-GTTTTCTTGTTCTG 1362
|||||||| |||| | |||||||||| |||||||||||||||| | |||| || ||||||
Sbjct 1133 TGACTCAATGAAG-G-CATTGAGTGTTGTTTGTTGTACATTTGCTTGTTTCCT-GTTCTG 1189
Query 1363 ATGAATAAAAAAC-TCTGATTTCGTTTGAC 1391
||||||||||| | | |||||| |||||||
Sbjct 1190 ATGAATAAAAATCAT-TGATTTGGTTTGAC 1218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51993184425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5