BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26160.1
Length=1474
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900126 jgi|Araly1|900126|Al_scaffold_0004_776 649 0.0
Ahg484337 jgi|Araly1|484337|fgenesh2_kg.5__329__AT3G25750.1 388 5e-107
Ahg473796 jgi|Araly1|473796|fgenesh2_kg.1__3750__AT1G44080.1 337 2e-91
Ahg916399 jgi|Araly1|916399|Al_scaffold_0008_1150 241 1e-62
Ahg491074 jgi|Araly1|491074|fgenesh2_kg.7__507__AT4G35733.1 130 3e-29
> Ahg900126 jgi|Araly1|900126|Al_scaffold_0004_776
Length=645
Score = 649 bits (351), Expect = 0.0
Identities = 513/586 (88%), Gaps = 31/586 (5%)
Strand=Plus/Plus
Query 1 ATGGAAAAACCTGAGTGGTCTGAATTACCTGGAGACCTCATCAATTTAACCGCAAACCGT 60
||||||| |||||||||| |||| ||||||| ||| ||||| ||||||| ||||| |||
Sbjct 1 ATGGAAATACCTGAGTGGACTGATTTACCTGAAGAACTCATTGATTTAACTGCAAAACGT 60
Query 61 TTCTCCTCCATTAGT-GACGTCCTCCGTGTACGTAGCATCTGTAAACCCTGGCGTTCGGC 119
|||||||||| | | |||||| ||||| | ||||||||||||||||||||||| || ||
Sbjct 61 TTCTCCTCCAACA-TCGACGTCGTCCGTATCCGTAGCATCTGTAAACCCTGGCGATCCGC 119
Query 120 GGCTGCGA-C--ACCGAAGAG----C--TTTC-A--ATGCAACCTTCCTTCCTCCAACAA 167
|| ||||| | || || || | |||| | | ||||||||||||||||||||||
Sbjct 120 GGTTGCGACCAAACAAAACAGCTTTCATTTTCAACGACGCAACCTTCCTTCCTCCAACAA 179
Query 168 -GATGATAGAGACTGTTCTCTCTCCCACCACTTTCTTCCGTG-TAACTGGCCCTTCTTCA 225
|| |||||||||| |||||||||| |||||||||||||||| | | || ||||||||||
Sbjct 180 GGA-GATAGAGACTCTTCTCTCTCCGACCACTTTCTTCCGTGTTTA-TGTCCCTTCTTCA 237
Query 226 TGTTCTTACAAAGGATGGCTGATCAGAACCAAACAAGTCTCTGAATCCAGTAAGATTAAT 285
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 238 GGTTCTTACAAAGGATGGCTGATCAGAACCAAACAAGTCTCAGAATCCAGTAAGATTTGT 297
Query 286 CTCTTGTCTCCTTTCTTTCGCCAGCTCCTA-ACCCCTTCACAACAAACCCTAGACCTTTT 344
|||||||||||||||| ||| |||||||| |||| ||||||| ||||||||||||||||
Sbjct 298 CTCTTGTCTCCTTTCTCTCGTCAGCTCCTTGACCC-TTCACAAGAAACCCTAGACCTTTT 356
Query 345 GAAATTTGAGGTTT-CAGAGATTCGCCAATCTTACGAGATTCATATATTTGATAAGTATT 403
|||||||| ||||| |||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 357 GAAATTTG-GGTTTTCAGAGATTCGAAAATCTTACGAGATTCATATATTTGATAAATATT 415
Query 404 TAATACA-AGGCGTGATAGGTAAAGA-AGGACCATCACATATA-TTGTCTAGAGTTGTTT 460
|||| || || ||||| ||||||| | |||||||||||||| | ||||||||||||||||
Sbjct 416 TAATTCATAG-CGTGAAAGGTAAA-ATAGGACCATCACATA-AGTTGTCTAGAGTTGTTT 472
Query 461 TCCTAGACAATCTGATTTTCGCAGTCGGAC-AGGATGACAAAATCTGGTGCTGCAAGAGT 519
|||||||||||||| ||||||||||||| | ||||||| |||||||||||||||||||||
Sbjct 473 TCCTAGACAATCTGTTTTTCGCAGTCGG-CGAGGATGAGAAAATCTGGTGCTGCAAGAGT 531
Query 520 GGAGAAGAGAGTAGTAGAATATGGACAAAAATCAAAAACCAAGTTG 565
|||||||| ||||||||||| ||||||||||||||||||||| |||
Sbjct 532 GGAGAAGAAAGTAGTAGAATTTGGACAAAAATCAAAAACCAA-TTG 576
> Ahg484337 jgi|Araly1|484337|fgenesh2_kg.5__329__AT3G25750.1
Length=1021
Score = 388 bits (210), Expect = 5e-107
Identities = 362/432 (84%), Gaps = 24/432 (6%)
Strand=Plus/Plus
Query 532 AGTAGAA-TATGGACAAAAATCAAAAACCAAGTTGAAGATTTCTTGGACATTATACTTCA 590
||||||| | ||||||||||| || |||||||| |||||||||| |||||||||||||||
Sbjct 490 AGTAGAAGT-TGGACAAAAATTAATAACCAAGTCGAAGATTTCTCGGACATTATACTTCA 548
Query 591 TAAAGGAC-AAGTCTATGCCTTAGACCTAACCGGCGCAATTTGGTGGATTAGTTTATCAC 649
| |||| | |||||||| | ||| ||| || |||| ||||||||||||||||||||
Sbjct 549 CATGGGACGTA-TCTATGCCGTGGACTTAAAAGGAGCAACTTGGTGGATTAGTTTATCAC 607
Query 650 CGCTCAG-CCTCCTTCAATTCACACCTTCAATTCCAATGGACTACGACGGA-TATGATAG 707
||| || || ||||| |||||||||| |||| |||||||| | | ||||||||
Sbjct 608 AGCTTAGTGCT-GTTCAACAGACACCTTCAACTCCATTGGACTACTA-TAATTATGATAG 665
Query 708 TTGC--A-ACAAGAGACTCGTTGAGTATTGTGGAGATCTATGCATTATTCATCAACTTCG 764
|||| | ||| ||| ||||| || ||||||||||||||||||||| ||||||||||| |
Sbjct 666 TTGCGAAGACACGAGGCTCGTGGAATATTGTGGAGATCTATGCATTGTTCATCAACTTAG 725
Query 765 C-TTAAAGAAAGC-TTATATCCGAAGGAGTCAAAGGACAGTTGGTTTTAAGGTTTATAAG 822
| || | ||| | |||||| | | | | ||||| |||||||||||||||||||||
Sbjct 726 CGTT-ACTAAA-CATTATAT-C--A-G-G----AGGACCGTTGGTTTTAAGGTTTATAAG 774
Query 823 ATGGACGAGTATGTGGCAAAATGGGTTGAGGTTAGGTCCTTGGGAGACAAGGCACTCATT 882
||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 775 ATGGACGAGGATTTGGCAAAATGGGTTGAGGTTAGTTCCTTGGGAGACAAGGCACTCATT 834
Query 883 GTGGCTAGGGACAGTTGTTTTACTGTTGTAGCCTCCGAGTACCATGGATGTTTGAACAAT 942
|| ||| |||||||||||||||| || |||||||| |||||||||||||||||||| |||
Sbjct 835 GTTGCTTGGGACAGTTGTTTTACGGTCGTAGCCTCTGAGTACCATGGATGTTTGAAGAAT 894
Query 943 TCTATCTACTTC 954
|||||||||||
Sbjct 895 GCTATCTACTTC 906
> Ahg473796 jgi|Araly1|473796|fgenesh2_kg.1__3750__AT1G44080.1
Length=1044
Score = 337 bits (182), Expect = 2e-91
Identities = 417/526 (79%), Gaps = 34/526 (6%)
Strand=Plus/Plus
Query 449 CTAGAGTTGTTTTCCTAGACAATCTGATTTTCGCAGTCGGAC-AGGATGACAAAATCTGG 507
||||||||||||||||| ||||| || |||||| ||| ||| | || |||| |||
Sbjct 407 CTAGAGTTGTTTTCCTAAACAATATGTTTTTCGTAGT-TGACTTCAAAAACGAAATTTGG 465
Query 508 TGCTGCAAGAGTGGAGAAGAGAGTAGTAGAATATGGACAAAAATCAA-AA--ACCAAGTT 564
|| ||||| || |||||||| |||| || | ||||||| ||| || || | ||| |
Sbjct 466 TGTTGCAAAAGCGGAGAAGAAAGTA-TA-CGT-TGGACAAGAATAAACAATGAAGAAGCT 522
Query 565 GAAGATTTCTTGGACATTATACTTCATAAAGGACAA-GTCTATGCCTTAGACCTAACCGG 623
|||| ||| ||||| ||||||||||| |||||| || |||||||| || ||| |||||||
Sbjct 523 GAAGGTTTTTTGGATATTATACTTCACAAAGGA-AAGGTCTATGCATTCGACTTAACCGG 581
Query 624 CGCAATTTGGTGGATTAGTTTATCACCGCTCAGCCTCCT-TCAATTCACACCTTCAATTC 682
||||||||||||||||||||||| |||||| | | ||||||| |||||||| ||
Sbjct 582 AGCAATTTGGTGGATTAGTTTATCTGAACTCAGCAT-ATATCAATTCGGACCTTCAACTC 640
Query 683 CAATGGACTACGACGGATA-TGATAGTTGC--A-ACAAGAGACTCGTTGAGTATTGTGGA 738
|| | |||||| || || | ||||| |||| | | |||||| |||| ||||||||||||
Sbjct 641 CATTAGACTACTAC-GACATTGATAATTGCAAAGAAAAGAGATTCGTCGAGTATTGTGGA 699
Query 739 GATCTATGCATTATTCATCAACTTCGCT-TAAAGAAA----GCTTATATCCGAAGGAGTC 793
||||| ||| ||||||||| || || | |||||| || || || || || |
Sbjct 700 GATCTCTGCGTTATTCATC--GTT-TCTGT-AAGAAATTTCGCGTAAAT-CG-AGTTCTT 753
Query 794 A-A-AG-G-ACAGTTGGTTTTAAGGTTTATAAGATGGACGAGTATGTGGCAAAATGGGTT 849
| | || | || ||||||||||||||||| ||||||||| || || ||| ||||||||||
Sbjct 754 AGAGAGAGAACCGTTGGTTTTAAGGTTTACAAGATGGACAAGAATTTGGTAAAATGGGTT 813
Query 850 GAGGTTAGGTCCTTGGGAGACAAGGCACTCATTGTGGCTAGGGACAGTTGTTTTACTGTT 909
||||| || ||||||||||||||||||||||||||||||| ||| ||||||||| || |
Sbjct 814 GAGGTCAGTTCCTTGGGAGACAAGGCACTCATTGTGGCTACGGATAGTTGTTTTT-TGGT 872
Query 910 GT-AGCCTCCGAGTACCATGGATGTTTGAACAATTCTATCTACTTC 954
| ||||||||||||| ||||||||||| | ||| |||||||||||
Sbjct 873 CTTAGCCTCCGAGTACTATGGATGTTTGGAGAATGCTATCTACTTC 918
Score = 200 bits (108), Expect = 2e-50
Identities = 248/313 (79%), Gaps = 19/313 (6%)
Strand=Plus/Plus
Query 80 TCCTCCGTGTACGTAGCATCTGTAAACCCTGGCGTTCGGCGGCTGCGA-CACCGAAGAG- 137
|||||||| | |||||||||||||||||||||||||| || ||||| || |||| |
Sbjct 80 TCCTCCGTTTCCGTAGCATCTGTAAACCCTGGCGTTCCACGATTGCGACCA-AGAAGCGT 138
Query 138 CT---T--TCA--ATGCAACCT-TCCTTCCT-CCAACAAGATGATAGAGACTGTTCTCTC 188
|| | || || ||| | ||||||| | ||||| || | |||||||| ||||
Sbjct 139 CTCCATAACCACTTTG-AACGTAACCTTCCTACTTTCAAGAAGACAAAGACTGTTGTCTC 197
Query 189 TCCCACCACTTTCTTCCGTGTAACTGGCCCTTCTTCATGTTCTTACAAAGGATGGCTGAT 248
||||||||||||||||||||||||| ||||||| ||||| || ||||||| ||||||||
Sbjct 198 TCCCACCACTTTCTTCCGTGTAACTCTCCCTTCTCCATGTCCTAACAAAGGGTGGCTGAT 257
Query 249 CAGAACCAAACAAGTCTCTGAATCCAGTAAGATTAATCTCTTGTCTCCTTTCTTTCGCCA 308
| || || ||||||||||||||| ||||||| ||||||||||| |||| | | | || |
Sbjct 258 TAAAAACAGACAAGTCTCTGAATCTAGTAAGAATAATCTCTTGTGTCCTCTGTCTGGCAA 317
Query 309 GCTCC-TAACCCCTTCACAACAAA-CCCTAGACCTTTTGAAATTTGAG-GTTTCAGAGAT 365
|| || | |||||||| | ||||| ||||||||||| |||| | | | ||||| || ||
Sbjct 318 GC-CCATCACCCCTTC-CGACAAAACCCTAGACCTTATGAAGCTCG-GTGTTTCGGAAAT 374
Query 366 TCGCCAATCTTAC 378
||| |||||||||
Sbjct 375 TCGTCAATCTTAC 387
> Ahg916399 jgi|Araly1|916399|Al_scaffold_0008_1150
Length=612
Score = 241 bits (130), Expect = 1e-62
Identities = 326/417 (78%), Gaps = 27/417 (6%)
Strand=Plus/Plus
Query 1 ATGGA-AAAACCTGAGTGGTCTGAATTACCTGGAGACCTCATCA-ATTTAACCGCAAACC 58
||||| |||| ||||||||||||| ||||||| ||| ||| | | |||||| |||||||
Sbjct 1 ATGGAGAAAA-CTGAGTGGTCTGATTTACCTGAAGAACTCCT-AGATTTAATTGCAAACC 58
Query 59 GTTT-CTCCTCCATTAGT-GACGTCCTCCGTGTACGTAGCATCTGTAAACCCTGGCGTTC 116
||| ||||||| | | |||||||||||| | ||||||||||||||| |||||||||
Sbjct 59 -TTTATTCCTCCAACA-TCGACGTCCTCCGTATCCGTAGCATCTGTAAATACTGGCGTTC 116
Query 117 GGCGGCTGCGA-CACCGAAGAG-CT-TTCA---ATG------CA---ACCTTCCTTCCTC 161
||| | ||| | ||||| | |||| || || |||||||| ||||
Sbjct 117 TACGGTTACGATGTCTAAAGAGTGTCTTCAGTTTTGCTTTTACAGCTACCTTCCTACCTC 176
Query 162 CAACAAGATGATAGAGACTGTTCTCTCTCCCACCACTTTCTTCCGTGTAACTGGCCCTTC 221
||| |||| |||| || || ||||| |||||||||||| |||||| ||||| ||||||
Sbjct 177 CAATAAGAAGATAAAGGCTCATCTCTTTCCCACCACTTTTTTCCGTATAACTCTCCCTTC 236
Query 222 TTCATGTTCTTACAAAGGATGGCTGATCAGAACCAAACAAGTCTCTGAATCCAGTAAGAT 281
||||||| || ||||||||||||| || ||||| | |||| ||| ||| |||||||
Sbjct 237 TTCATGTCCTAACAAAGGATGGCTAATAAGAACTAGCCAAGCCTCCAAATATTGTAAGAT 296
Query 282 TAATCTCTTGTCTCCTTTCTTTCGCCAGCTCCTAACCCCTTCACAACAAACCCTAGACCT 341
|| ||||||| |||| ||| | || ||||| | | || ||| || ||||||||||||||
Sbjct 297 TACTCTCTTGAGTCCTATCTCTGGCGAGCTCATCATCCATTCCCACCAAACCCTAGACCT 356
Query 342 TTTGAAATTTGAG-GTTTCAGAGATTCGCCAATCTTACGAGATTCATATA-TTTGAT 396
|||||| ||| | |||||||||||||||||||||||||||||| ||| | ||||||
Sbjct 357 TTTGAAGGTTG-GCGTTTCAGAGATTCGCCAATCTTACGAGATT-ATAAAATTTGAT 411
> Ahg491074 jgi|Araly1|491074|fgenesh2_kg.7__507__AT4G35733.1
Length=1080
Score = 130 bits (70), Expect = 3e-29
Identities = 301/409 (74%), Gaps = 30/409 (7%)
Strand=Plus/Plus
Query 560 AAGTTGAAGATTTCTTGGACATTATACTTCATAAAGGACA-AGTCTATGCCTTAGACCTA 618
||||| || ||||| ||| ||| || |||| ||||| | | | |||||||||||| ||
Sbjct 560 AAGTTAAACTTTTCTCGGATATTGTATTTCACAAAGGTTATA-TGTATGCCTTAGACTTA 618
Query 619 ACCGGCGCAATTTGGTGGATTAGTTTATCACCGCTCAG-CCTCCTTCAATTCACACCTTC 677
| |||||| ||||||||||||||||||| | | | | |||||| | ||||||
Sbjct 619 AAAGGCGCAGTTTGGTGGATTAGTTTATCTGAG-TTTGAAATATTTCAATACGGACCTTC 677
Query 678 AATTCCAATGGACTACGACGGATA-TGATAGTTGC--A-ACAAGAGACTCGTTGAGTATT 733
|| |||| |||||||| | || | ||||| |||| | ||||||| | || |||||||
Sbjct 678 AACTCCACTGGACTACTA-TGACATTGATACTTGCAAAGACAAGAGGTTTGTGGAGTATT 736
Query 734 GTGGAGATCTATGCATTATTCATCAACTTCGCTTAAAGAAA----GCTTATATCCGAAG- 788
| ||||||||||||||| |||||| | || | | | |||| || || | || ||
Sbjct 737 GCGGAGATCTATGCATTGTTCATCGATTTTG--T-AGGAAATTTCGCCTA-AAGCG-AGT 791
Query 789 -GA-GTC-AAAGGACAGTTGGTTTTAAGGTTTATAAGATGGACGAGTA-TGTGGCAAAAT 844
|| || | | || |||||||||||||||||||||||||||||| | | ||| |||
Sbjct 792 TGATATCGATATAACCGTTGGTTTTAAGGTTTATAAGATGGACGAGGAAT-TGGTTGAAT 850
Query 845 GGGTTGAGGTTAGGTCCTTGGGAGACAAGGCACTCATTG-TGGCTAGGGACAGTTGTTTT 903
|||||||||| ||| ||||| || ||||| | | | |||||| || ||||| ||
Sbjct 851 ATGTTGAGGTTAAGTCTTTGGGGGATAAGGCTTTTGT-GATGGCTACAGATAGTTGCTTC 909
Query 904 ACTGT-TGTAGCCTCC-GAGTACCATGGATGTTTGAACAATTCTATCTA 950
||||| | | || | ||||| ||||||||||| | ||||| |||||
Sbjct 910 ACTGTCT-TGGC-TAGAGAGTATTATGGATGTTTGGAGAATTCGATCTA 956
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55154674760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5