BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26170.1
Length=1701
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481472 jgi|Araly1|481472|fgenesh2_kg.4__532__AT2G26170.1 2564 0.0
> Ahg481472 jgi|Araly1|481472|fgenesh2_kg.4__532__AT2G26170.1
Length=1685
Score = 2564 bits (1388), Expect = 0.0
Identities = 1591/1690 (94%), Gaps = 10/1690 (1%)
Strand=Plus/Plus
Query 1 ACACATTAAACTAAAGAAGAGAGAACTTTAGAGGTTAGAGAGATGAAGACGCAACATCAA 60
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ACACATTAAATTAAAGAAGAGAGAACTTTAGAGGTTAGAGAGATGAAGACGCAACATCTA 60
Query 61 TGGTGGGAAGTTCTTGATCCATTCTTGACACAACACGAAGCTCTTATTGCATTCTTGACT 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 TGGTGGGAAGTTCTTGATCCATTCTTGACACAACACGAAGCTCTTGTTGCATTCTTGACT 120
Query 121 TTTGCAGCGGTTGTAATTGTGATTTACTTGTACCGACCCTCCTGGTCCGTATGCAATGTT 180
||||||| |||||| |||||| |||||||||||||||| |||||||||||| ||||||||
Sbjct 121 TTTGCAGTGGTTGTGATTGTGGTTTACTTGTACCGACCATCCTGGTCCGTACGCAATGTT 180
Query 181 CCCGGTCCAACCGCTATGCCTCTAGTTGGTCACTTGCCCTTGATGGCTAAGTATGGTCCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 CCCGGTCCAACCGCTATGCCTCTAGTTGGTCACTTGCCCTTGATGGCTAAGTACGGTCCT 240
Query 241 GATGTCTTCTCCGTTCTTGCTAAGCAATATGGCCCTATTTTCAGATTTCAGATGGGGAGG 300
||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||
Sbjct 241 GATGTCTTCTCCGTTCTTGCTAAACGATATGGCCCAATTTTCAGATTTCAGATGGGGAGG 300
Query 301 CAACCACTGATAATAATAGCAGAAGCAGAGCTTTGCAGAGAAGTTGGGATAAAGAAGTTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAACCACTGATAATAATAGCAGAAGCAGAGCTTTGCAGAGAAGTTGGGATAAAGAAGTTC 360
Query 361 AAAGATCTTCCAAACAGAAGCATTCCTTCCCCAATCTCAGCTTCTCCTCTTCACAAGAAA 420
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 361 AAAGATCTTCCAAACAGAAGCATTCCCTCTCCAATCTCAGCCTCTCCTCTTCACAAGAAA 420
Query 421 GGCCTCTTCTTCACCAGGGACAAGAGATGGTCTAAAATGAGAAACACCATCCTATCTCTC 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGCCTCTTCTTCACTAGGGACAAGAGATGGTCTAAAATGAGAAACACCATCCTATCTCTC 480
Query 481 TATCAGCCTTCACATTTAACAAGTCTTATCCCTACAATGCATAGTTTCATCACTTCTGCT 540
|| |||||||||||||| || |||||||||||||||||||| | ||||||||||||||||
Sbjct 481 TACCAGCCTTCACATTTGACCAGTCTTATCCCTACAATGCACAATTTCATCACTTCTGCT 540
Query 541 ACTCATAATCTTGATTCTAAACCGCGAGATATCGTTTTCTCCAACCTCTTCCTCAAACTT 600
|||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 541 ACTCATGATCTTGATTCGAAACCGCGAGATATCGTTTTCTCCAACCTCTTCCTTAAACTA 600
Query 601 ACCACTGATATCATCGGACAAGCGGCTTTTGGAGTCGACTTCGGTCTTTCCGGGAAGAAA 660
||||| ||||||||||||||||| |||||||||||| |||| ||||||||||||||||||
Sbjct 601 ACCACGGATATCATCGGACAAGCTGCTTTTGGAGTCAACTTTGGTCTTTCCGGGAAGAAA 660
Query 661 CCAATCAAAGATGTGGAGGTGACTGATTTCATAAACCAGCATGTCTACTCTACAACACAA 720
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CCTGTCAAAGATGTAGAGGTGACTGATTTCATAAACCAGCATGTCTACTCTACAACACAG 720
Query 721 CTCAAGATGGATTTATCAGGATCACTCTCTATCATCTTAGGCTTACTGATTCCGATTCTT 780
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 721 CTCAAGATGGATTTATCTGGATCACTCTCCATCATCTTAGGCTTACTGATTCCGATTCTT 780
Query 781 CAAGAGCCGTTTAGGCAGGTGTTGAAGAGGATACCGGGAACAATGGACTGGAGAGTCGAG 840
|||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 781 CAAGAGCCGTTTAGACAGGTTTTGAAGAGGATACCGGGAACAAAGGACTGGAGAGTCGAG 840
Query 841 AAGACTAATGCAAGACTGAGTGGACAACTTAATGAGATTGTGTCAAAGCGAGCCAAGGAG 900
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AAGACTAACGGAAGACTGAGTGGACAACTTAATGAGATTGTGTCAAAGCGAGCCAAGGAA 900
Query 901 GCTGAGACTGACTCAAAAGACTTCTTGTCATTGATTTTGAAAGCTCGAGAGTCCGATCCT 960
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 901 GCTGAGACTGACTCAAAAGACTTCTTGTCATTGATTTTGAAAGCTAGAGAGTTCGATCCT 960
Query 961 TTCGCCAAAAACATCTTCACATCGGATTATATTAGTGCTGTGACTTATGAGCATCTTCTT 1020
|||||||| | || || || |||||||||| |||||||||||||| ||||||||||||
Sbjct 961 TTCGCCAAGGAGATATTTACGCCGGATTATATCAGTGCTGTGACTTACGAGCATCTTCTT 1020
Query 1021 GCTGGCTCTGCAACCACTGCTTTCACACTATCCTCTGTTCTTTACTTAGTCTCTGGTCAT 1080
|||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1021 GCTGGCTCTGCAACTACTGCTTTCACATTATCCTCTGTTCTCTACTTAGTCTCTGGTCAT 1080
Query 1081 CTTGATGTTGAGAAACGTCTGCTTCAAGAAATTGACGGGTTTGGGAA-CCGTGATCTGAT 1139
||||| ||||||||||||||||||||||| |||||||||||||| || ||||||| ||||
Sbjct 1081 CTTGAAGTTGAGAAACGTCTGCTTCAAGAGATTGACGGGTTTGG-AAGCCGTGATTTGAT 1139
Query 1140 CCCGACTGCTCATGACTTACAACACAAGTTTCCATACCTCGATCAGGTCATTAAAGAGGC 1199
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1140 CCCGACTGCTCATGACTTACAATACAAGTTTCCATACCTCGATCAGGTCATCAAAGAGGC 1199
Query 1200 TATGAGATTCTACATGGTTTCTCCTTTGGTTGCAAGGGAAACTGCTAAAGAAGTGGAGAT 1259
||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 1200 TATGAGATTCTACATGGTTTCCCCTTTGGTTGCAAGGGAAACTGCAAAAGAAGTTGAGAT 1259
Query 1260 AGGAGGTTATTTACTCCCAAAGGGGACATGGGTTTGGTTAGCACTAGGAGTTCTAGCAAA 1319
||||||||| ||||||| ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1260 AGGAGGTTACCTACTCCCTAAGGGTACATGGGTTTGGTTGGCACTAGGAGTTCTAGCAAA 1319
Query 1320 GGACCCTAAAAACTTTCCAGAACCGGAGAAGTTCAAGCCGGAAAGATTTGATCCGAACGG 1379
|||||| |||||||||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct 1320 GGACCCGAAAAACTTTCCAGACCCAGAGAAGTTCAGGCCGGAAAGATTTGATCCGAACGG 1379
Query 1380 AGAAGAGGAGAAACA-TAGACATCCATACGCTTTCATCCCATTCGGTATCGGTCCACGAG 1438
||||||||| ||| | ||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1380 AGAAGAGGAAAAA-AGTAGGCATCCATACGCTTTCATACCATTCGGTATCGGTCCACGAG 1438
Query 1439 CCTGTGTTGGACAGAGATTTGCCCTGCAAGAGATCAAACTCACATTACTGCATCTCTACC 1498
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1439 CCTGTGTTGGACAGAGATTTGCCCTGCAGGAGATCAAACTCACCTTACTGCATCTCTACA 1498
Query 1499 GTAATTACATTTTCAGACATTCCCTAGAAATGGAGATACCACTGCAGCTTGATTATGGTA 1558
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1499 GTAATTACATTTTCAGACATTCCCCAGAAATGGAGAAACCACTGCAGCTTGATTATGGTG 1558
Query 1559 TAATTCTCAGCTTCAAGAACGGGGTTAAGCTCAGAACCATCAAAAGATTCTGATTCTTGA 1618
|||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||
Sbjct 1559 TAATTCTCAGCTTCAAGAACGGTGTAAAGCTCAGAGCCATCAAAAGATTCTGATTCTTGA 1618
Query 1619 AACAAGTGAA-ATAAAAGCAAGACTGAAATTT--ATATTTAAATTCAAAACTCCAATGTA 1675
||||||||| ||| | || ||| | |||| ||||||||||||||||||||||||||
Sbjct 1619 AACAAGTGATGATATAT--AA-ACTTAGATTTTTATATTTAAATTCAAAACTCCAATGTA 1675
Query 1676 GTTCCAAAGG 1685
||||||||||
Sbjct 1676 GTTCCAAAGG 1685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63801160375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5