BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26180.1
Length=1515
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932856 jgi|Araly1|932856|scaffold_400844.1 2056 0.0
Ahg481472 jgi|Araly1|481472|fgenesh2_kg.4__532__AT2G26170.1 73.1 5e-12
> Ahg932856 jgi|Araly1|932856|scaffold_400844.1
Length=1295
Score = 2056 bits (1113), Expect = 0.0
Identities = 1234/1293 (95%), Gaps = 5/1293 (0%)
Strand=Plus/Plus
Query 102 AGATCGAAACTTTTTAATCTATGGGTGCTTCAGGGAAATGGGTCAAGTCCATTATCGGTC 161
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 AGATCGAATCTTTTTCATCTATGGGTGCTTCAGGGAAATGGGTCAAGTCCATTATTGGTC 60
Query 162 TCAAGAAGCTAGAGAAGGATGAAATCGAAAAGGGTAATGGGAAAAACAAGAAATGGAAGC 221
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACAAGAAGCTAGAGAAAGATGAAATCGAAAAGGGTAATGGGAAAAACAAGAAATGGAAGC 120
Query 222 TATGGAGGACTACTTCAGTAGATTCATGGAAGGGTTTTCGAGGAAAACATCGGTCTGATT 281
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 121 TATGGAGGACTACTTCAGTGGATTCATGGAAGGGTTTTCGAGGTAAACATCGGTCTGAAT 180
Query 282 CAGACGGTGTTGATTCTTCTACTGTTTACTCTGCTGCTGTTGCTACTGTTCTTAGAGCTC 341
|||| ||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 CAGAGGGTCTTGATTCTTCAACTGTTTACTCTGCTGCTGTTGCTACTGTGCTTAGAGCTC 240
Query 342 CTCCTAAAGATTTCAAAGCTGTTAGAGAAGAATGGGCTGCTATTAGAATCCAAACCGCTT 401
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCCTAAAGATTTCAAAGCTGTAAGAGAAGAATGGGCTGCTATTAGAATCCAAACCGCTT 300
Query 402 TTCGTGGATTCTTGGCGAGAAGAGCGTTGAGGGCATTGAAAGGGATAGTGAGGTTACAAG 461
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 301 TTCGTGGATTCTTGGCGAGAAGAGCGTTGAGGGCGTTGAAAGGGATAGTGAGGTTACAAG 360
Query 462 CTTTAGTGAGAGGAAGACAAGTTAGGAAACAAGCAGCTGTTACATTGAGATGCATGCAAG 521
||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 361 CTTTAGTTAGAGGAAGACAAGTGAGGAAACAAGCAGCTGTGACATTAAGATGCATGCAAG 420
Query 522 CTTTGGTGAGAGTACAAGCTCGTGTTAGAGCTCGTCGTGTGAGGATGACTGTTGAAGGAC 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTTTGGTGAGAGTACAAGCTCGTGTTAGAGCTCGTCGTGTGAGGATGACTGTTGAAGGAC 480
Query 582 AAGCTGTTCAAAAGCTTTTAGATGAACATAGAACCAAATCTGATCTCTTGAAAGAAGTCG 641
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 481 AAGCTGTTCAAAAGCTTTTAGATGAACACAGAACCAAATCTGATCTTTTGAAAGAAGTCG 540
Query 642 AGGAAGGGTGGTGTGATAGGAAAGGTACTGTGGATGATATTAAGTCAAAGTTGCAGCAGA 701
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 AGGAAGGTTGGTGTGATAGGAAAGGTACTGTGGATGATATTAAGTCAAAGTTGCAGAAGA 600
Query 702 GACAAGAAGGTGCTTTTAAGAGGGAACGTGCTTTGGCTTATGCTCTTGCTCAAAAGCAAT 761
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 601 GACAAGAAGGTGCTTTTAAGAGAGAACGTGCTTTGGCTTATGCTCTAGCTCAAAAGCAAT 660
Query 762 GGAGGTCAACTACTAGCTCAAACCTTAAGACGAATAGTTCGATTTCGTATCTTAAAAGTC 821
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 661 GGAGGTCAACTACTAGCTCAAACCTTAAGACGAATAGTTCGATTTCATATCTTAAAAGTC 720
Query 822 AAGAGTTTGATAAGAATAGTTGGGGATGGAGTTGGTTGGAGCGTTGGATGGCTGCTAGGC 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AAGAGTTTGATAAGAATAGTTGGGGATGGAGTTGGTTGGAGCGTTGGATGGCTGCTAGGC 780
Query 882 CATGGGAGACTAGACTTATGGACACTGTTGATACCGCTGCCACGCCTCCTCCTCTGCCTC 941
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 781 CATGGGAGACTAGACTTATGGACACTGTTGATGCCGCTGCCACGCCTCCTCCTCCGCCTC 840
Query 942 ATAAACATTTGAAATCACCGGAAACTGCGGATGTTGTTCAAGTTAGAAGAAACAATGTGA 1001
|||| |||||||||||||| ||||| | |||||||||| |||| ||||||||||||||||
Sbjct 841 ATAAGCATTTGAAATCACCTGAAACCGTGGATGTTGTTAAAGTCAGAAGAAACAATGTGA 900
Query 1002 CCACTAGAGTATCTGCAAAACCTCCTCCTCATATGCTGTCTTCAAGTCCTGGTTATGAGT 1061
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 901 CCACTAGGGTATCTGCAAAACCTCCTCCTCATATGTTGTCTTCAAGTCCTGGTTATGAGT 960
Query 1062 TTAACGAGAGCTCAGGTTCATCCTCGATTTGTACTTCAACTACGCCTGTTTCTGGAAAAA 1121
|||| || ||||| |||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 961 TTAATGAAAGCTCCGGTTCATCTTCGATTTGTACTTCAACTACACCTGTTTCTGGAAACA 1020
Query 1122 CTGGACTTGTTTCAGATAACTCTAGCAGTCAAGCAAAAAAGCACAAGCCAAGTTACATGA 1181
|||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1021 CTGGCCTTGTTTCAGACAACTCTAGCAGTCAAGCAAAAAAGAACAAGCCAAGTTACATGA 1080
Query 1182 GCTTGACTGAATCGACAAAGGCTAAGCGAAGAACTAACCGCGGTCTCAGGCAATCTATGG 1241
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GCTTGACTGAATCAACAAAGGCTAAGCGAAGAACTAACCGCGGTCTCAGGCAATCTATGG 1140
Query 1242 ATGAGTTTCAGTTTATGAAGAACTCTGGAATGTTTACAGGGGAATTGAAGACTAGTCCTT 1301
||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||| |
Sbjct 1141 ATGAGTTTCAGTTTATGAAGAACTCTGGATTGTTTACTGGGGAGTTGAAGACTAGTCATG 1200
Query 1302 CCTCAGATCCTT--T-TGTTAGTTTCTCCAAACCACTCGGTGTTCCTACTCGATTCGAGA 1358
|||||||||||| | |||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1201 CCTCAGATCCTTCCTATGTTAGTTTCTCTAAACCACTCGTTGTTCCTACTCGATTCGAGA 1260
Query 1359 AGCCGAGAGGTTAAATGTGACCTTGTT-AGATT 1390
||| |||||| ||| |||||||||||| |||||
Sbjct 1261 AGCTGAGAGGGTAA-TGTGACCTTGTTTAGATT 1292
> Ahg481472 jgi|Araly1|481472|fgenesh2_kg.4__532__AT2G26170.1
Length=1685
Score = 73.1 bits (39), Expect = 5e-12
Identities = 39/39 (100%), Gaps = 0/39 (0%)
Strand=Plus/Minus
Query 1461 CCTTTGGAACTACATTGGAGTTTTGAATTTAAATATAAA 1499
|||||||||||||||||||||||||||||||||||||||
Sbjct 1685 CCTTTGGAACTACATTGGAGTTTTGAATTTAAATATAAA 1647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56716374805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5