BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26200.1
Length=1896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481476 jgi|Araly1|481476|fgenesh2_kg.4__536__AT2G26200.1 2789 0.0
> Ahg481476 jgi|Araly1|481476|fgenesh2_kg.4__536__AT2G26200.1
Length=1780
Score = 2789 bits (1510), Expect = 0.0
Identities = 1697/1788 (95%), Gaps = 10/1788 (1%)
Strand=Plus/Plus
Query 4 GAAGAAGAACCAGAGCGTTTAACGTCGACGAA-CACAGATACGGCGTGTGGTAATAAATA 62
||||||||||||||||||||| |||||||||| |||||||||||||||||| | ||||
Sbjct 1 GAAGAAGAACCAGAGCGTTTACCGTCGACGAACCACAGATACGGCGTGTGG---T-AATA 56
Query 63 ATGTCTTCTGGCTTGAAAATCATAGAAGAACCGCAAAAACCGATTGAGAAGCTGCAGATT 122
||||||||||||||||||||||||||||||| ||| ||||||||| ||||| ||||||||
Sbjct 57 ATGTCTTCTGGCTTGAAAATCATAGAAGAACAGCAGAAACCGATTCAGAAGTTGCAGATT 116
Query 123 TATCCGACGGCTAATGCTGGTGTTTCTCCCTTTTGGCGAGACAAGTATGAGCGAGATGCT 182
||||||||||||||||| ||||||||||| ||||||||||| |||||||| | ||||||
Sbjct 117 TATCCGACGGCTAATGCCGGTGTTTCTCCTTTTTGGCGAGAGAAGTATGAAAGGGATGCT 176
Query 183 AAAAAGTATTGGGATATATTTTACAAGCATCATGGAGACAGATTTTTCAAAGACCGCCAC 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 AAAAAGTATTGGGATATATTTTACAAGCATCATGGAGACAGATTTTTCAAAGACCGCCAC 236
Query 243 TACTTGGATAAGGAATGGAATAGCTATTTTTCCGTTAGTGGGAAAAGTGTCATTCTTGAG 302
|||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 237 TACTTGGACAAGGAATGGAATAGCTATTTTTCCGGTAGTGGGAAAAAAGTCATTCTTGAG 296
Query 303 GTTGGCTGTGGAGCTGGAAACACCATCTTTCCATTGATCGCCACATATCCAGACATTTTT 362
||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 297 GTTGGTTGTGGAGCTGGAAACACCATCTTTCCGTTGATTGCCACATATCCAGACATTTTT 356
Query 363 GTTTATGCATGTGATTTTTCACCACGAGCCGTCGAATTGGTCAAGGCTCATGATGAATAC 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GTTTATGCATGTGATTTTTCACCACGAGCCGTCGAATTGGTCAAGGCTCATGATGAATAC 416
Query 423 ACAGAGACACGCGTTTGTGCATTTGCTTGTGACTTGACAGGGGATGGTCTTGACAAGCAT 482
|||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 ACAGAGACGCGTGTGTGTGCATTTGCTTGTGACTTGACAGGGGATGGTCTTGACAAGCAT 476
Query 483 ATTTCTCCATCTTCAGTTGATATTGTGACCATGATATTTGTTTTATCTGCGGTATCCCCA 542
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 477 ATTTCTCCATCTTCAGTTGATATTGTGACCATGATATTCGTTTTATCTGCGGTATCCCCA 536
Query 543 GAGAAGATGTCCTCAGTATTGCAGAACATTAGGAAAGTTCTTAAGCCAAATGGGTGTATC 602
||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 537 GAGAAGATGGCCTCAGTATTGCAGAACATTAAGAAAGTGCTTAAGCCAAATGGGTGTATA 596
Query 603 CTCTTCCGTGACTATGCTGTCGGTGATCTTGCTCAGGAGAGGTTCTCTGGGAAGGATCAG 662
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 597 CTCTTCCGTGACTATGCTGTCGGTGATCTTGCTCAGGAGAGGTTTTCTGGGAAGGATCAG 656
Query 663 AGGATCAGCGAGAACTTTTATGTGAGAGGTGATGGCACTCGTGCATTCTACTTTTCTAAT 722
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 AAGATCAGCAAGAACTTTTATGTGAGAGGTGATGGCACTCGTGCATTCTACTTTTCTAAT 716
Query 723 GAATTCCTAGAAACTTTGTTTTCTGAACAAGGATTTGAAGTTGAGGAGCTTGATGTTTGC 782
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 717 GAATTCCTAGAAACTCTGTTTTCCGAACAAGGATTTGAAGTTGAGGAGCTTGATGTTTGC 776
Query 783 TGCAAACAAGTTGAGAATCGTTCACGCGAACTGGTCATGAATCGGCGCTGGGTCCAAGCT 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TGCAAACAAGTTGAGAATCGTTCACGCGAACTGGTCATGAATCGGCGCTGGGTCCAAGCT 836
Query 843 ACATTTCGTCGAACAAATGGCAACAAAAACCCTTGTGATAGTTTGA-CTCCTGCCAAATT 901
|||||| ||||| | |||||||| |||||||| | |||||||| | |||||||||||||
Sbjct 837 ACATTTTGTCGATCGCATGGCAACCAAAACCCTGGCGATAGTTT-ATCTCCTGCCAAATT 895
Query 902 AGATAAATCTGAACAACAGGATAGCATTCAGTCTAAATCTGAGGAGCAGGAAAGAAAAGA 961
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 896 AGACAAATCTGAACAACATGATAGCATTCAGTCTAAATCTGAGGAGCAGGAAAGAAAAGA 955
Query 962 GATTATTGATTACACTGACATTGACATATCTGATGGTCTGGCTATGGAAATGTTTGGAGC 1021
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GATTATCGATAACACTGACATTGACATATCTGATGGTCTGGCTATGGAAATGTTTGGAGC 1015
Query 1022 CTCCCCATCAAGTCATGAGATGAGCGTGGTTAAGCTTAGGGATTCTGCTTTTAAAATCAA 1081
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1016 CTCCCCATCAAGTCATGAGATGACCGTGGTTAAGCTTAGGGATTCTGATTTTAAAATCAA 1075
Query 1082 ACTTTTGTCAAAAGAATATCAACATACTTGCAAATCTACGGGGTTGATGCTCTGGGAGTC 1141
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1076 ACTTTTGTCCAAAGAATATCAACATACTTGCAAATCAACGGGGTTGATGCTCTGGGAGTC 1135
Query 1142 TGCTCGGCTTATGGCTTCTGTTCTTGACAGGAACCCAAACATTGTTTCTGGAAAACGGGT 1201
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1136 TGCTCGGCTTATGGCTTCTGTTCTTGACAGGAACCCAAATATTGTGTCTGGAAAACGGGT 1195
Query 1202 GTTGGAATTGGGTTGTGGCTGCACAGGAATTTGCTCGATGGTAGCTGCCAGATCAGCTAA 1261
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1196 GTTGGAATTGGGTTGTGGCTGTACAGGGATTTGCTCGATGGTAGCTGCCAGATCAGCTAA 1255
Query 1262 CCTTGTGGTAGCAACCGATGCAGACACAAAGGCACTTACGCTATTGACAGAGAACATCAC 1321
||| |||||||| |||||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct 1256 CCTGGTGGTAGCTACCGATGCAGACACGAAGGCACTTACACTACTGACAGAGAACATCAC 1315
Query 1322 AATGAACCTCCAATCTTCTTTACTTGGAAAACTGAAAACAAGCGTACTTGAATGGGGAAA 1381
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||
Sbjct 1316 AATGAACCTCCAATCTTCTTTACTTGGAAAACTGAAAACAGGTGTACTTGAATGGGGTAA 1375
Query 1382 CAAAGAGCATATAGAAAGCATTAAGCGTTTGGCTTGTGAGGGATTCGAAGTTATCATGGG 1441
|||||| |||| ||||||||||||| ||||||||||||||||||| ||||||||||| ||
Sbjct 1376 CAAAGAACATACAGAAAGCATTAAGGGTTTGGCTTGTGAGGGATTTGAAGTTATCATTGG 1435
Query 1442 GACAGATGTTACCTATGTAGCTGAAGCCATTATACCTTTATTTGAAACCGCAAAAGAGTT 1501
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 1436 GACAGATGTTACCTATGTAGCTGAAGCCATTATTCCTTTGTTTGAAACCGCAAAAGAATT 1495
Query 1502 GATCTTACGGAAAATGGGAGACGACTTAGAGGTGCAAGAGAAGCCGGCGTTGATTCTATG 1561
||| |||||||||||||||||| || |||| ||||||| |||||||| |||||||||||
Sbjct 1496 GATTTTACGGAAAATGGGAGAC--CT-AGAGATGCAAGAAAAGCCGGCATTGATTCTATG 1552
Query 1562 CCATGTTTTCAGAAGGGTTGATGAACCTTCTCTTCTGTCAGCTGCATCTAAGTTTGGGTT 1621
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1553 CCATGTTTTCAGAAGGGTTGATGAACCTTCTCTCCTGTCAGCTGCATCTAAGTATGGGTT 1612
Query 1622 TAAGCTTGCAGACAGATGGGCTGCAAATTCAAAGGAATCTCCTATTGGGAACATCATTGA 1681
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1613 TAAGCTTGCAGACAGATGGGCTGCAAATTCAAAGGAATCTCCTATCGGGAACATCATTGA 1672
Query 1682 CAGTTGGTTTTCCGAAAAGGATTTGGTCGCAGAAATCCCGAGTTCTGCGTTGCATATTCT 1741
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1673 CAGATGGTTTTCCGAAAAGGATTTGGTCGCGGAAATCCCGAGTTCTGCGTTGCATATTCT 1732
Query 1742 CTATTTTCAGATGGAGTAACTATGTGGTAGAGGAGCAAATGTTGATTA 1789
|| |||||||||||||||||||| ||| ||||| ||| |||||||||
Sbjct 1733 TTACTTTCAGATGGAGTAACTATGGGGTGGAGGATCAAGTGTTGATTA 1780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71228758150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5