BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26210.1
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932873 jgi|Araly1|932873|scaffold_400861.1 922 0.0
> Ahg932873 jgi|Araly1|932873|scaffold_400861.1
Length=611
Score = 922 bits (499), Expect = 0.0
Identities = 567/599 (95%), Gaps = 7/599 (1%)
Strand=Plus/Plus
Query 164 TTTGCATGCTGTTTTCCAATAAAGTTAATTCTCTAA-CAGAACAAGTTTCGAGATTGGAT 222
|||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 16 TTTGAATGCTGTTTTCCAATAAAGTTAATTCTCTAATC-GAACAAGTTTCGAGATTGGAT 74
Query 223 ATTGACGACAACGATATGGGACTTGGAGGTAGTGAAACAATGGAATGCAAGTGTGGTATG 282
||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 75 ATTGACGAC-A--ATATGGGCCTTGGAGGTAGTGAAACAATGGAATGCAAGTGTGGTATG 131
Query 283 CCTCTGTGTATCTGTGTAGCTCCTCCCAAATCAACTGATAAACCAAACCCACCTGCTACC 342
|||||||| ||||||||||||||| ||||||| || ||||||||||||||||| ||||||
Sbjct 132 CCTCTGTGCATCTGTGTAGCTCCTTCCAAATCTACGGATAAACCAAACCCACCGGCTACC 191
Query 343 ATTGCTCCTGTGGTTCTTCCTCAGTTGAAGTCAGAGGCTTCAGCAAAAAGTAAAGGTTCC 402
|||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||
Sbjct 192 GTTGCTCCTGTGGTTCTCCCTCAGTTAAAGTCAGAGACTTCAGCAAAAAGTAAAGGTTCC 251
Query 403 ACTTCCAGCAGCAATGCTAGATCAGCTCTAAATGCTGGACTAGACACCCCCCAAAGAGAC 462
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 252 ACTTCCAGCAGCAATGCTAGATCAGCTCTTAATCCTGGACTAGACACCCCCCAAAGAGAC 311
Query 463 TATGAAGCCAGTGGGGAGGGATTAAGAGAAGCGATTAAGAATGGTGACAGTGCTGGTGCG 522
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 312 TATGAAGCCAGTGGGGAGGGATTAAGAGAAGCGATTAAGAATGGTGACATTGCTGGTGTG 371
Query 523 AAAAAGCTTCTAAAAGAGGGCGTAGATGCAAATTACCGAGACAGGCAAGGAATGTCGGTG 582
||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||| |||
Sbjct 372 AAAAAGCTTTTAAAAGAGGGCGTAGATGCAAATTACCGAGACAAGCAGGGAATGTCAGTG 431
Query 583 CTTCATCTGGCTGTCCTGTTCAACCAAACTGATATTGCGTTGATGTTGATGGATCATGGA 642
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 432 CTTCATCTGGCTGTCCTTTTCAACCAAACTGATATTGCATTGATGTTGATGGATCATGGA 491
Query 643 GCAAGCCTTGAGTACAAGAATGCACAAGGAGAAACACCGCTAGATTGTGC-CCCGGCAAC 701
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 492 GCAAGCCTCGAGTACAAGAATGCACAAGGAGAAACACCGCTAGATTGTGCACCCG-CAAC 550
Query 702 ACTGCAATACAAGATGCGGGAAAAGATGAAGTCCACTTAACAGCATGCCTCAGACAGAG 760
||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct 551 ACTGCAATACAAGATGCGGGAAAAGATGAAGTCCACTTAACAGCAGGCATCATACAGAG 609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37817933664
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5