BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26230.1
Length=1354
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474714 jgi|Araly1|474714|fgenesh2_kg.1__4668__AT2G26230.1 1517 0.0
> Ahg474714 jgi|Araly1|474714|fgenesh2_kg.1__4668__AT2G26230.1
Length=961
Score = 1517 bits (821), Expect = 0.0
Identities = 905/946 (96%), Gaps = 4/946 (0%)
Strand=Plus/Plus
Query 188 GTTACTTAGAATGGCACAAGAAGCCGATGGGATCAGATTGGACCAAAGACATGGGAAGGC 247
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 18 GTTACTTAGAATGGCACAAGAAGCTGATGGGATCAGATTGGAGCAAAGACATGGGAAGGC 77
Query 248 TCGAGTGAGAGTTGGAAGAGTTTGGCGTCATGCTCATGATGGATCTCATCACTTTGTTGA 307
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 78 TCGTGTGAGAGTTGGAAGAGTTTGGCGTCATGCTCATGATGGATCTCATCACTTTGTTGA 137
Query 308 ATGGAATGTTAGCATCAGTCTTCTCTCTCACTGTCTCTCTTCTTACCGTCTTGATGATAA 367
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 138 ATGGAATGTTAGCATCAGTCTTCTCTCTCACTGTCTCTCTTCTTACTATCGTGATGATAA 197
Query 368 CTCTGATATTGTCGCCACAGATACCATTAAAAACACTGTTTATGTGAAAGCCAAGGAATG 427
||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 198 CTCTGATATTGTCGCTACCGATACCATGAAAAACACTGTTTATGTGAAAGCCAAGGAATG 257
Query 428 TGGAGATCGGCTCTCGGTGGAGGAATTTGCCATACTTATTGGGAAACACTTTTGCTCATT 487
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 258 TGGAGATCGACTCTCGGTGGAAGAATTTGCCATACTTATTGGGAAACACTTTTGCTCATT 317
Query 488 TTATCCACAGGTATTTACTGCTATCGTGAATATCATTGAGAAGCCCTGGGAGCGTGTCTC 547
|||||||||||| |||||||||||||||| |||||||||||| |||||||||||||| ||
Sbjct 318 TTATCCACAGGTTTTTACTGCTATCGTGAGTATCATTGAGAAACCCTGGGAGCGTGTATC 377
Query 548 CATCGATGGAAAACCACATTTACATGGTTTTAAGCTTGGGTCAGAGAACCATACTACAGA 607
||| |||||||||||||||||||||||||| |||||||| || |||||||||||| ||||
Sbjct 378 CATTGATGGAAAACCACATTTACATGGTTTCAAGCTTGGATCCGAGAACCATACTGCAGA 437
Query 608 GGCAAGAGTAGAAAAGTCTGGTGCATTAAACTTAACTTCCGGTATTGGAGGACTAGCTCT 667
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 438 GGCAAGAGTAGAAAAGTCTGGTGCACTAAACTTAACTTCTGGTATTGGAGGACTAGCTCT 497
Query 668 ACTGAAGACAACCCAGTCAGGATTTGAGAGGTTTGTCAGAGACAAATACACCATTCTGCC 727
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 498 ACTGAAGACAACCCAGTCAGGATTTGAGAGGTTTGTCAGAGACAAATACACCGTTCTGCC 557
Query 728 TGAAACTCGTGAGCGAATGCTGGCCACAGAGGTTAATGCATCTTGGAGGTACTCGTATGA 787
||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 TGAAACTGGCGAGAGAATGCTGGCCACAGAGGTTAATGCATCTTGGAGGTACTCGTATGA 617
Query 788 GTCAGTTGCAAGCATTCCAACAAAAGGACTCTACTTTAGC-GAGAAGTTCATGGACGTTA 846
||||||||||||||| |||||||||||||||||||| | | ||||||||||||||||| |
Sbjct 618 GTCAGTTGCAAGCATCCCAACAAAAGGACTCTACTTCA-CTGAGAAGTTCATGGACGTAA 676
Query 847 AGAAAGTTCTGATGGATACTTTCTTTGGTCCACCAGAAACTGGTGTGTATAGCCCTTCTG 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 AGAAAGTTCTGATGGATACTTTCTTTGGTCCACCAGAAACTGGTGTGTATAGCCCTTCTG 736
Query 907 TCCAACGCACTCTCTACCTCATGGGAAGCGCCGTACTGAAAAGGTTCGCTGATGTATCAT 966
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 TGCAACGCACTCTCTATCTCATGGGAAGCGCCGTACTGAAAAGGTTCGCTGATGTATCAT 796
Query 967 CGATTCACCTAAAAATGCCAAATATTCATTTTCTACCAGTAAATCTTTCAACGAAGGAAA 1026
| |||||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||
Sbjct 797 CAATTCACCTAAAAATGCCAAATATTCACTTTCTACCTGTAAATCTATCAACCAAGGAAA 856
Query 1027 ACCCTTCAATGGTGAAGTTTAAAGATGATGTGTACCTGCCAACCGATGAACCTCATGGAT 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 ACCCTTCAATGGTGAAGTTTAAAGATGATGTGTACCTGCCAACCGATGAACCTCATGGAT 916
Query 1087 CTATAGAAGCAACTC-TAAGCCGTATAACCTCGAAACTATGAGGTT 1131
||||||||||||| | ||||||| ||||||||||||||||||||||
Sbjct 917 CTATAGAAGCAAC-CGTAAGCCGCATAACCTCGAAACTATGAGGTT 961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50665356693
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5