BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26240.1
Length=666
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481481 jgi|Araly1|481481|fgenesh2_kg.4__541__AT2G26240.1 773 0.0
> Ahg481481 jgi|Araly1|481481|fgenesh2_kg.4__541__AT2G26240.1
Length=559
Score = 773 bits (418), Expect = 0.0
Identities = 469/494 (95%), Gaps = 2/494 (0%)
Strand=Plus/Plus
Query 91 gaagaagaaAATGGACTCATCTTTGTCGCAGAAGTTCACTCTTGCTTATGCTTCTCTCCT 150
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 66 GAAGAAGAAAATGGAGTCATCTTTGTCGCAGAAGTTCACTCTTGTTTATGCTTCTCTCCT 125
Query 151 CGGAGTTGGTGGGTTGATGGGTTACCTGAAACGCGGAAGCAAAATATCACTTGTCGCAGG 210
||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 126 CGGAGCTGGTGGGTTGATGGGTTACTTGAAACGCGGAAGCAAAATATCACTAGTCGCAGG 185
Query 211 AGGAGGTTCAGCTGCGTTGTTCTATTATGTATACACGGAGCTCCCAGGAAATCCAGTCTT 270
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 AGGAGGATCAGCGGCGTTGTTCTATTATGTATACACGGAGCTCCCAGGAAATCCAGTCTT 245
Query 271 AGCATCCTCCATTGGCATTGTGGGGTCGGCGGCACTGACAGGGATGATGGGATCACGTTA 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 AGCATCCTCCATTGGCATTGTGGGGTCGGCGGCACTGACAGGGATGATGGGATCACGTTA 305
Query 331 CCTAAGGACGAGGAAAGTGGTACCGGCTGGACTTGTGTCGGTGGTGTCACTCGTCATGAC 390
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 306 CCTAAGGACGAGGAAAGTGGTACCGGCTGGAGTTGTGTCGGTGGTGTCACTCGTGATGAC 365
Query 391 TGGAGCTTACTTGCACGGCCTCATTCGCTCAAGTTGAAGTGTCTCTGCTATCTTCCTTGG 450
|||||||||||| || ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 366 TGGAGCTTACTTACATGGCCTCATTCGCTCAAGTTGAAGCGTCTCTGCCATCTTCCTTGG 425
Query 451 ACCTATTTTCCAATATTG-TTAAGG-TTTTTTGGGTGCGCATTTCAAATTTCTGAAAATT 508
|||||||| ||||||||| |||| | |||||| |||| ||||||||||||||||||||||
Sbjct 426 ACCTATTTCCCAATATTGCTTAAAGCTTTTTTTGGTGGGCATTTCAAATTTCTGAAAATT 485
Query 509 GTTGTATAAATGCTTTGTGGTGTTGTTTCTTTTACCAAGTTCTTATGTCCTTGTGTACTT 568
|||||| |||||||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 486 GTTGTACAAATGCTTTGTGGTGTTGTTTCTTTTACCAAGTTTTTATGTCCCGGTGTAATT 545
Query 569 TTAAGAGATTATAT 582
|||||||| |||||
Sbjct 546 TTAAGAGAATATAT 559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24436789797
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5