BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26260.1
Length=1936
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481483 jgi|Araly1|481483|fgenesh2_kg.4__543__AT2G26260.1 2885 0.0
Ahg473882 jgi|Araly1|473882|fgenesh2_kg.1__3836__AT1G47290.2 1086 0.0
> Ahg481483 jgi|Araly1|481483|fgenesh2_kg.4__543__AT2G26260.1
Length=1787
Score = 2885 bits (1562), Expect = 0.0
Identities = 1720/1796 (96%), Gaps = 11/1796 (1%)
Strand=Plus/Plus
Query 46 TTTCTCCTGAAAAGATTTTTCAAGCTCTCTCTTTCTCTCAAAGGTAAATGCTTCTCTGAT 105
||||||||||||| || ||||||| ||| |||||||||||| ||||||||| ||||
Sbjct 1 TTTCTCCTGAAAACATCTTTCAAG----CTC--TCTCTCAAAGGT-AATGCTTCTTTGAT 53
Query 106 TTCGCCATTTTTGCTTACTCGATTC-AAAAGACATGTCGCCGGCAGCTACGGAGACGGAG 164
|||||||||||| | || ||||||| |||||||||| |||||| | ||||||||||||||
Sbjct 54 TTCGCCATTTTTTC-TAGTCGATTCAAAAAGACATGACGCCGGAATCTACGGAGACGGAG 112
Query 165 CGATGGTGCGTTGTTACCGGCGGTAGAGGATTCGCGGCGAGGCATCTTGTTGAAATGCTC 224
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 113 CGATGGTGCGTTGTTACCGGTGGTAGAGGATTCGCGGCGAGGCATCTTGTTGAAATGCTC 172
Query 225 GTACGCTACGAAATGTTTTGCGTCCGTATCGCCGATTTAGCTCCGGCGATAATGCTTGAT 284
||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 173 GTACGCTACGAAATGTTCAGCGTCCGCATCGCCGATTTAGCTCCGGCGATAATGCTTGAT 232
Query 285 CCTCAGGAAGGGAACGGAGTTCTCGACGAAGGATTAAGATCTGGTCGTGTTCAATATATC 344
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 CCTCATGAAGAGAACGGAGTTCTCGACGAAGGATTAAGATCTGGTCGTGTTCAATATATC 292
Query 345 TCCGCTGATCTTCGAGATAAATCTCAAGTCGTTAAAGCTTTTCAGGGAGCGGAGGTGGTG 404
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 293 TCCGCTGATCTTCGTGATAAATCTCAAGTCGTTAAAGCTTTTCAGGGAGCTGAGGTGGTG 352
Query 405 TTTCATATGGCAGCTCCAGATTCTTCTATTAACAATCATCAGCTTCAGTATTCGGTGAAT 464
||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 353 TTTCACATGGCAGCTCCAGATTCTTCTATCAACAATCATCAGCTTCAGTACTCGGTGAAT 412
Query 465 GTTCAAGGGACACAAAATGTGATTGATGCTTGTGTTGATGTTGGAGTAAAGAGGCTTATT 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 GTTCAAGGGACACAAAATGTGATTGATGCTTGTGTTGATGTTGGAGTAAAGAGGCTTATT 472
Query 525 TACACTAGCTCTCCTAGTGTTGTGTTTGATGGTGTTCATGGTATTTTGAACGGTACTGAA 584
||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||
Sbjct 473 TACACTAGCTCTCCTAGTGTTGTGTTTGATGGTGTTCATGGTATTTTAAATGGTAGTGAA 532
Query 585 TCAATGGCTTACCCAATTAAGCACAATGACTCATATTCAGCAACTAAAGCTGAAGGAGAA 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 TCAATGGCTTACCCAATTAAGCACAATGACTCATATTCAGCAACTAAAGCTGAAGGAGAA 592
Query 645 GAGTTGATCATGAAGGCTAATGGTAGAAATGGACTACTCACTTGTTGCATACGTCCAAGC 704
|| ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 593 GAATTGATCATGAACGCGAATGGCAGAAATGGACTACTCACTTGTTGCATACGTCCAAGC 652
Query 705 AGTATTTTTGGTCCCGGTGATAGATTATTGGTTCCGTCGCTTGTTGCTGCTGCTAGGGCT 764
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 653 AGTATTTTTGGTCCCGGTGATAGATTATTGGTTCCCTCACTTGTTGCTGCTGCTAGGGCT 712
Query 765 GGGAAATCTAAGTTTATTATTGGTGATGGGAATAATCTCTATGATTTCACTTACGTTGAG 824
|| ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 713 GGAAAATCCAAGTTTATTATAGGTGATGGGAATAATCTCTATGATTTCACCTACGTTGAG 772
Query 825 AATGTTGCTCATGCCCATGTTTGTGCTGAGCGTGCTCTAGCTTCAGGAGGAGATGTTTCT 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 AATGTTGCTCATGCCCATGTTTGTGCTGAGCGTGCTCTAGCTTCAGGAGGAGATGTTTCT 832
Query 885 ACAAAAGCTGCAGGACAGGCATATTTCATTACCAACATGGAGCCAATTAAATTTTGGGAA 944
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 ACAAAAGCTGCAGGACAGGCATATTTCATTACCAACATGGAGCCAATTAAATTTTGGGAG 892
Query 945 TTTATGTCACAGCTCCTTGATGGACTTGGTTACGAGAGGCCAAGCATAAAGATCCCTGCG 1004
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 893 TTTGTGTCACAGCTCCTTGAAGGACTTGGTTACGAGAGGCCAAGCATAAAGATCCCTGCG 952
Query 1005 TTTATCATGATGCCGATTGCGCATCTGGTTGAACTGACATATAAAGTGTTGGGACCATAT 1064
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 953 TTTGTCATGATGCCGATTGCGCATCTGGTTGAACTGACATATAAACTGTTGGGACCATAT 1012
Query 1065 GGGATGACAGTACCACAACTAACACCTTCAAGAGTTAGGCTTCTCTCATGCAGCAGAACT 1124
||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1013 GGGATGAAAGTACCACAACTAACACCTTCAAGAGTTAGGCTTCTCTCGTGCAGTAGAACT 1072
Query 1125 TTCGATTCCACGAAAGCAAAGGATCGACTAGGCTATGCTCCTGTGGTCCCACTTCAGGAA 1184
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1073 TTCGATTCCACAAAAGCAAAGGATCGGCTAGGCTATGCTCCTGTGGTGCCACTTCAGGAA 1132
Query 1185 GGTATACGGAGGACGATAGACTCATTCTCTCACCTAACAGCTGGAAGTCAATCCAAAAGA 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 GGTATACGGAGGACGATAGACTCATTCTCTCACCTAACAGCTGGAAGTCAATCCAAAAGA 1192
Query 1245 GAGGGCCCATCCAAGGCTTCTAGGATTCTTGGAGGCGGAAAGGTTGCTGATACACTTCTC 1304
||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1193 GAGGGCCCATCTAAGGCTTCTAGGATCCTTGGAGGTGGAAAGGTTGCTGATACACTTCTC 1252
Query 1305 TGGAAGGATTTAAAGCAGACTCTTATTGCCATATTCATTCTAATTAGTATCTATTATAAC 1364
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1253 TGGAAGGATTTAAAGCAGACTCTCATTGCCATATTCATTCTAATTAGTATCTATTATAAC 1312
Query 1365 TTTGTTGCAACTGGGTCTACCGTCGTAACTGCTCTTTCGAAGGCTCTATTGGTAGCATCT 1424
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1313 TTTGTTGCAACTGGGTCTACCATCGTAACTGCTCTTTCGAAGGCTCTATTGGTAGCATCG 1372
Query 1425 GTATTTTTGTTCCTCCATGGCATTCTACCAGAGAAAATATTTGGTTATACAGTTGAAAAG 1484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 GTATTTTTGTTCCTCCATGGCATTCTACCAGAGAAAATATTTGGTTATACAGTTGAAAAG 1432
Query 1485 ATTCCTGCATCGCAATTTCACCTCTCAAAAGACTCATCACATGACCTCTCATTGTCAGTG 1544
|||||||||||||| ||||||||||| |||||||||||| | |||||||||||||||||
Sbjct 1433 ATTCCTGCATCGCAGTTTCACCTCTCGAAAGACTCATCAGAACACCTCTCATTGTCAGTG 1492
Query 1545 ATCTCTTCATGGAACACCACTGTAAAAGCTTTAAGATCTCTTTGCCAGGGGAATGATTGG 1604
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1493 ATCTCTTCATGGAACACCACTGTAAAAGCTTTACGATCTCTTTGCCAGGGGAATGATTGG 1552
Query 1605 AGCTTCTTTTTCAAGGTGGTCTTCGTTTTGTTAGCATTGAGTTTGGCTGGAGCCATATCT 1664
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1553 AGCTTCTTTTTCAAGGTGGTCTTTGTTTTGTTAGCATTGAGTTTGGCTGGAGCCATATCT 1612
Query 1665 CTTCACAGCATATTTGTTATAGGACTGCCCATTGCCTTCCTTGCTTTTCTCGTGTACGAA 1724
|||||||||||||||||||||||| | |||||||||||| |||||||| |||||||||||
Sbjct 1613 CTTCACAGCATATTTGTTATAGGAATTCCCATTGCCTTCATTGCTTTTATCGTGTACGAA 1672
Query 1725 AAGAAAG-AGCAAGAGATCGACTCAATAGTGGTGAGTTTTAAATCTTTCGCATGCAAGCA 1783
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 AA-AAAGGAGCAAGAGATCGACTCAATAGTGGTGAGTTTTAAATCTTTCGCATGCAAGCG 1731
Query 1784 CAAATCCGATGTGTATGAGAAATTGTTCGGAAGCAAGAAACATGACTAAAAACCCt 1839
||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1732 GAAATCTGATGTGTATGAGAAACTGTTCGGAAGCAAGAAACATGACTAAGAACCCT 1787
> Ahg473882 jgi|Araly1|473882|fgenesh2_kg.1__3836__AT1G47290.2
Length=1647
Score = 1086 bits (588), Expect = 0.0
Identities = 936/1105 (85%), Gaps = 20/1105 (2%)
Strand=Plus/Plus
Query 152 TACGGAGACGGAGCGATGGTGCGTTGTTACCGGCGGTAGAGGATTCGCGGCGAGGCATCT 211
||| ||||| |||||||||||||| || ||||| |||||||||||||| || || |||||
Sbjct 114 TACAGAGACTGAGCGATGGTGCGTCGTAACCGGTGGTAGAGGATTCGCTGCAAGACATCT 173
Query 212 TGTTGAAATGCTCGTACGCTACGAAATGTTTTGCGTCCGTATCGCCGATTTAGCTCCGGC 271
||| |||||||| ||||| ||||| ||||| || |||||||||||||||||||||||
Sbjct 174 TGTGGAAATGCTGGTACGTTACGAGATGTTCCATGTACGTATCGCCGATTTAGCTCCGGC 233
Query 272 GATAATGCTTGATCCTCAGGAAGGGA-AC-GGAGTTCTCGACGAAG-GATTAAGATCTGG 328
|||| |||| || ||||| | | ||| || ||| |||||| |||| ||| ||||| ||
Sbjct 234 GATAGTGCTCGACCCTCATG-A-GGAGACTGGACTTCTCGGTGAAGCAATT-AGATCCGG 290
Query 329 TCGTGTTCAATATATCTCCGCTGATCTTC-GAGATAAATCTCAAGTCGTTAAAGCTTTTC 387
| | |||||||| ||||||||||||||| || | ||||||||||| || |||| |||||
Sbjct 291 TAGAGTTCAATACGTCTCCGCTGATCTTCGGA-ACAAATCTCAAGTTGTCAAAGGTTTTC 349
Query 388 AGGGAGCGGAGGTGGTGTTTCATATGGCAGCTCCAGATTCTTCTATTAACAATCATCAGC 447
||||||| || || |||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 350 AGGGAGCAGAAGTTGTGTTTCATATGGCAGCTCCAGATTCATCGATTAACAATCACCAGC 409
Query 448 TTCAGTATTCGGTGAATGTTCAAGGGAC-ACAAAATGTGATTGATGCTTGTGTTGATGTT 506
||||||| || || |||||||||||||| || |||||| |||||||||||| |||| |||
Sbjct 410 TTCAGTACTCAGTTAATGTTCAAGGGACAAC-AAATGTAATTGATGCTTGTATTGAGGTT 468
Query 507 GGAGTAAAGAGGCTTATTTACACTAGCTCTCCTAGTGTTGTGTTTGATGGTGTTCATGGT 566
||||||||||| || || || || || ||||| ||||| |||||||| || || ||||||
Sbjct 469 GGAGTAAAGAGACTAATCTATACAAGTTCTCCGAGTGTCGTGTTTGACGGGGTCCATGGT 528
Query 567 ATTTTGAA--CGGTACTGAATCAATGGCTTACCCAATTAAGCACAATGACTCATATTCAG 624
| |||||| | | | |||||||||| | |||||| ||||||||||||||||||||||
Sbjct 529 ACTTTGAATGCCG-A-TGAATCAATGCCGTACCCACCCAAGCACAATGACTCATATTCAG 586
Query 625 CAACTAAAGCTGAAGGAGAAGAGTTGATCATGAAGGCTAATGGTAGAAATGGACTACTCA 684
|||||||||||||||| |||| |||||| |||| |||||||| ||||||||||||||||
Sbjct 587 CAACTAAAGCTGAAGGGGAAGCTTTGATCTTGAAAGCTAATGGAAGAAATGGACTACTCA 646
Query 685 CTTGTTGCATACGTCCAAGCAGTATTTTTGGTCCCGGTGATAGATTATTGGTTCCGTCGC 744
|||||||||||||||| ||||| || |||||||| ||||||| |||| ||||||| ||||
Sbjct 647 CTTGTTGCATACGTCCTAGCAGCATATTTGGTCCTGGTGATAAATTAATGGTTCCATCGC 706
Query 745 TTGTTGCTGCTGCTAGGGCTGGGAAATCTAAGTTTATTATTGGTGATGGGAATAATCTCT 804
||||| ||||||| |||||||||||||| ||||| ||||| |||||||||| ||| || |
Sbjct 707 TTGTTACTGCTGCCAGGGCTGGGAAATCCAAGTTCATTATAGGTGATGGGAGTAA-CTTT 765
Query 805 -ATGATTTCACTTACGTTGAGAATGTTGCT-CATGCCCATGTTTGTGCTGAGCGTGCTCT 862
||||||||||||| ||||| ||||||| | || |||||||| ||||||||||| || ||
Sbjct 766 TATGATTTCACTTATGTTGAAAATGTTG-TGCACGCCCATGTCTGTGCTGAGCGAGCACT 824
Query 863 AGCTTCAGGAGGAGATGTTTCTACAAAAGCTGCAGGACAGGCATATTTCATTACCAACAT 922
||| ||||||||||| || | | ||||||||||||| |||||||| ||||||||||||||
Sbjct 825 AGCATCAGGAGGAGAAGTATGTGCAAAAGCTGCAGGCCAGGCATACTTCATTACCAACAT 884
Query 923 GGAGCCAATTAAATTTTGGGAATTTATGTCACAGCTCCTTGATGGACTTGGTTACGAGAG 982
||||||||||||||||||||| |||||||||||||| ||||| |||||||| || | |||
Sbjct 885 GGAGCCAATTAAATTTTGGGAGTTTATGTCACAGCTTCTTGAAGGACTTGGCTATGCGAG 944
Query 983 GCCAAGCATAAAGATCCCTGCGTTTATCATGATGCCGATTGCGCATCTGGTTGAACT-GA 1041
|||||| |||||||| ||||| | |||||||||| || || |||| || ||||| |
Sbjct 945 GCCAAGTATAAAGATACCTGCAAGTCTCATGATGCCAATAGCATATCTTGTGGAACTAG- 1003
Query 1042 CATATAAAGTGTTGGGACCATATGGGATGACAGTACCACAACTAACACCTTCAAGAGTTA 1101
|||||||| | | |||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct 1004 CATATAAATTACTCGGACCATATGGGATGAAAGTACCAGTGCTAACACCTTCTAGAGTTA 1063
Query 1102 GGCTTCTCTCATGCAGCAGAACTTTCGATTCCACGAAAGCAAAGGATCGACTAGGCTATG 1161
|||| ||||| |||| ||||||||| ||||| | |||||||||||||| |||||||||
Sbjct 1064 GGCTACTCTCTTGCAACAGAACTTTTGATTCTTCAAAAGCAAAGGATCGTTTAGGCTATG 1123
Query 1162 CTCCTGTGGTCCCACTTCAGGAAGGTATACGGAGGACGATAGACTCATTCTCTCACCTAA 1221
|||| || ||||||||||||||||||||| |||||| ||||| || ||||| ||| |
Sbjct 1124 CTCCCGTTGTCCCACTTCAGGAAGGTATAAAGAGGACAATAGATTCGTTCTCACACTTGG 1183
Query 1222 CAGCTGGAAGTCAATCCAAAAGAGA 1246
||||| || |||| |||||| |||
Sbjct 1184 CAGCTCAAAATCAACCCAAAACAGA 1208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72752367950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5