BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26270.1
Length=1529
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320417 jgi|Araly1|320417|fgenesh1_pm.C_scaffold_4000474 2008 0.0
Ahg481487 jgi|Araly1|481487|fgenesh2_kg.4__547__AT2G26280.1 56.5 6e-07
> Ahg320417 jgi|Araly1|320417|fgenesh1_pm.C_scaffold_4000474
Length=1335
Score = 2008 bits (1087), Expect = 0.0
Identities = 1255/1336 (94%), Gaps = 12/1336 (1%)
Strand=Plus/Plus
Query 85 ATGA-TCACCTCATGTGGACGTAAGTTTGAGCACACTTTGAAACATGGGGCAAGAAATGG 143
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGATTC-CCTCATGTGGACGTAAGTTTGAGCACACTTTGAAACATGGGGCAAGAAACGG 59
Query 144 TCTCTTTGTTGTTACGATTGGCTGGTTTGTAGATAGCGTCAAGAGGAACTTCAGGATGAG 203
||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 60 TCTCTTTGTTGTTACTATTGGCTGGTTTGTAGATAGCGTCAAGAGAAACCTCAGGATGAG 119
Query 204 CGAATCACTTTACAATGTTAAACAACTTAGACAAAATTGCGAAAAGGGGGATGAGCTGAG 263
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 120 TGAATCACTTTACAATGTTAAACAACTTGGACAAAATTGCGAAAAGGGGAATGAGCTGAG 179
Query 264 CCGGGTTTTTGACCTCGAAAC-TATTTGTCGTCCTCGACAAATTCAAGCTGTACATTTTG 322
|||||||||||| |||| ||| ||||||||||||||| ||||||||||||||| ||||||
Sbjct 180 CCGGGTTTTTGATCTCG-AACATATTTGTCGTCCTCGTCAAATTCAAGCTGTAAATTTTG 238
Query 323 GCACATCAACGAAGAACCACCAAGTATCTTCTTCTGGAACAGAGTCTGGCACTAGTGTAG 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GCACATCAACGAAGAACCACCAAGTATCTTCTTCTGGAACAGAGTCTGGCACTAGTGTAG 298
Query 383 ACATGAGTCTTGCTGACCATTGCATGTATGTTGATTCAGACATTTCAGATGAACTCCGCC 442
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 299 ACATGACTCTTGCTGACCATTGCATGTATGTTGATTCAGACATTTCAGATGAACTCCGGC 358
Query 443 TTAAGGTGTTAAAGGTTGCTGGAGAGCAAGGAGCAAAGGTCATCGATTCATGGTTTATTG 502
||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct 359 TTAAGGTGTTAAAGGTTGCTGGAGAGCAAGGAGCAAAAGTGATTGATTCATGGTTTATTG 418
Query 503 GTTGCAATGCAAGTTTTGTCGTGTGTGAAGGTGCTTCTATTCAGAGATACCTTGGCCATG 562
|||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 419 GTTGCAATGCAAGTCTTGTCGTGTGTGAAGGTGCTTCTATCCAGAGATATCTTGGCCATG 478
Query 563 CCAAAACCATTGTCTCACCACTATGGGTTCTGAAAACAGTGGAGAAACATCGACAAAGAC 622
|||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 479 CCAACACCATTGTCTCGCCACTATGGGTTCTGAAAACAGTGGAGAGACATCGACAAAGAC 538
Query 623 TTGTACACATGTCACCTGATTTAGCTAGACAGTTAGGATTAATGCTTGAAAATTTTGAAG 682
|||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 539 TTGTTCATATGTCACCTGATTTAGCCAGACAGTTAGGATTAATGCTTGAAAATTTTGAAG 598
Query 683 ATGGTGCGGCAAATGAGAAAATTTCCGGGCAAGGTAATTCTCAAGAGGCTTTTAAATCCA 742
||||| | ||||| |||||||||| || |||||||||||||||||| |||||||||| ||
Sbjct 599 ATGGTACTGCAAAAGAGAAAATTTGCGAGCAAGGTAATTCTCAAGATGCTTTTAAATTCA 658
Query 743 GAAGTTTATCAAAACAAGAACGGAAAGAGACTGTAAATATAGCTAAAACGGGGGTTAGGA 802
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 659 GAAGTTTATCAAAACAAGAACGGAAAGAGACTGTAAATATAGCTAAAACTGGTGTTAGGA 718
Query 803 GACGACGTGCTCGCCATATGCAGACTTGCCAAAACCCAATAAGACGCATAACACAGTA-C 861
|||| ||||||||| ||||||||||||| |||||||||||||||||||||||||| | |
Sbjct 719 GACGGCGTGCTCGCTATATGCAGACTTGTCAAAACCCAATAAGACGCATAACACAA-AGC 777
Query 862 AGCCTGCTGGACAATATTTGCTGGACAATATCTGAAGCAGCTTCAGCCGCCACTATTTTT 921
||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 778 AGCCTGCTGGAGAATATTTGCTGGACAATATCTGAAGCAGCGTCAACCGCCACTATTTTT 837
Query 922 ACTGA-C-----AGCAGCAGTCGTGACATCAGTGAACCCCAGCCTTCTGTTGTACAAGAT 975
||||| | ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 838 ACTGATCCTTGCAGCAGCAGTCGTGACATCAGTGAACCCCAGCTTTCTGTTGTACAAGAA 897
Query 976 GGGATAGATAAAGGGTTAGATCCAGTGGCTTCTTTTTCAAATTCAACCAGAGCACTAACC 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 898 GGGATAGATAAAGGGTTAGATCCAGTGGCTTCTTTTTCAAATTCAACCAGAGCGCTCACC 957
Query 1036 GAGAGTGAGAAGACAGAAGTGATATTTAAAGACAGCTTCCTTACAATTCTATATCCAGCT 1095
||||| || ||||| ||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 958 GAGAGCGAAAAGACGGAAGTAATATTTAAAGACAGCTTCCTTACAATTCTATTTCCAGCT 1017
Query 1096 GATCGGTTCTCGGAGATGGGACCTTCTTCACGGACTTATTTCAGTGATAGTGGTTTCACT 1155
||||||||||||||||| ||||| |||||||| |||||||| |||||||| |||||||||
Sbjct 1018 GATCGGTTCTCGGAGATTGGACCATCTTCACGCACTTATTTTAGTGATAGCGGTTTCACT 1077
Query 1156 TGCCTGCAAATCTTAGACTATATCTACAGATTTTACCAGGAGAACTTGCCGGATCATGAA 1215
||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1078 TGCCTGCAAATCTTAAACTATATCCACAGATTTTATCAGGAGAACTTGCCGGATCATGAA 1137
Query 1216 ATAGAAGTTGCAATTCACACAGACTCGAGGCACGCTGACCGTCTCAGAACAGTGTATTGC 1275
||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1138 ATAGAGGTTGCGATTCACACAGACTCGAGGCACGCTGACCGGCTCAGAACAGTGTATTGC 1197
Query 1276 AGCAAAGAGACATCAGATGAAGGATGCTTGGTTTTCCCAAGAATAGAGTTATTAGGAAGC 1335
|||||||||||||||||||||||| | | |||||||| |||||||||||| | ||||||
Sbjct 1198 AGCAAAGAGACATCAGATGAAGGACACATCGTTTTCCCGAGAATAGAGTTACTGGGAAGC 1257
Query 1336 AGGAAAAGTTTCGAAATGCTTAAGCGAGTGAATGGAGAGAACAACAGTAATGTTTATGAG 1395
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1258 AGGAAAAGTTTCGAAATGCTTAAGCGTGTGAATGGAGAGAACAACAGTAATGTTTATGAG 1317
Query 1396 CTTATGATTAGAGCTT 1411
|| |||||||||||||
Sbjct 1318 CTCATGATTAGAGCTT 1333
> Ahg481487 jgi|Araly1|481487|fgenesh2_kg.4__547__AT2G26280.1
Length=2261
Score = 56.5 bits (30), Expect = 6e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Minus
Query 1500 GCACATTAAATCTAAGAGAATTACAAATAT 1529
||||||||||||||||||||||||||||||
Sbjct 2261 GCACATTAAATCTAAGAGAATTACAAATAT 2232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57249638235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5