BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26280.1
Length=2312
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481487 jgi|Araly1|481487|fgenesh2_kg.4__547__AT2G26280.1 3321 0.0
> Ahg481487 jgi|Araly1|481487|fgenesh2_kg.4__547__AT2G26280.1
Length=2261
Score = 3321 bits (1798), Expect = 0.0
Identities = 2119/2264 (94%), Gaps = 62/2264 (3%)
Strand=Plus/Plus
Query 62 AAGAAGACGACGCTTACCCCAAAACTCGAATCCCTA---G--G-AGGTTTTGGTAATATG 115
|||||||||||||||| ||||||||||||||||||| | | ||| ||||||||||||
Sbjct 34 AAGAAGACGACGCTTAGCCCAAAACTCGAATCCCTAGGTGAAGCAGGGTTTGGTAATATG 93
Query 116 AATTGAGAAGTCCACGCACGTGTGTATCTCTATTACCGTCAGA--TTT--TGGTTTAAAA 171
||||||| ||||||||||||||||||||||||||||||||||| ||| | |||| |
Sbjct 94 AATTGAG-AGTCCACGCACGTGTGTATCTCTATTACCGTCAGAGGTTTCAT-TTTTATTA 151
Query 172 GCAGTTATTTT-TACTAGTCTTGTAAG-AATGAGTTTAACAAAGAAAGCAAGTGAACCAA 229
| || |||| | | | | || | || |||||| ||||| |||||||||||||| ||||
Sbjct 152 G-TCTTCTTTTGTCCCA-T-TT-T-AGCAATGAGCTTAACCAAGAAAGCAAGTGATCCAA 206
Query 230 AGCTAAGTGGTACTAGTATCAAGCCAACAACTTTAAACCCTCATGCTGCTGAGTTTGTTC 289
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 207 AGCTAAGTGGTACTAGTATCAAGCCAACAACTTTGAACCCTCATGCTGCTGAGTTTGTTC 266
Query 290 CGTTTACTCTACGTTCTCCTTCATCTGGAGGTACAAGTACTTTGGAT--------A-CAA 340
||||||||||||||||||||||||||||||||||||| ||||||||| | |||
Sbjct 267 CGTTTACTCTACGTTCTCCTTCATCTGGAGGTACAAGCACTTTGGATGCGGCGACATCAA 326
Query 341 GACTTTTAGCTTCTTCTAGTTCTGTTGGGAAAGCGGTTTTGGACAGGACAGAATCATCTG 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 GACTTTTAGCTTCTTCTAGTTCTGTTGGGAAAGCGGTTTTGGACAGGACAGAATCATCTG 386
Query 401 CGTCACATCATTCAGATGAAGAAGCACGTCAGTTCTGGAGTCATCAACTTCCTGATGATA 460
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 CATCACATCATTCGGATGAAGAAGCACGTCAGTTCTGGAGTCATCAACTTCCTGATGATA 446
Query 461 TAACTCCAGATTTTGGGTTGATGACTCAAGATGACAATTCTTATGGATCTGGTAGTTTGT 520
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 447 TAACTCCAGATTTTGGGTTAATGACTCAAGATGACAATTCTTATGGATCTGGGAGTTTGT 506
Query 521 CACTAGCTAACTTGTCGTTGTTTGACGGTAATGAAGCTGAGAAGTTTCCTTCTGCTAGTG 580
|| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 507 CATTAGCTAGCTTGTCGTTGTTTGACGGTAATGAAGCTGAAAAGTTTCCTTCTGCTAGTG 566
Query 581 GAGGATAT-GGCTTTTCAGATCAAACTGGATTAGCTTCACATAATGCTAATGGTAATAGC 639
|||| | | || ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 567 GAGGGT-TCGGATTTTCTGACCAAACTGGATTAGCTTCACATAATGCTAATGGTAATAGC 625
Query 640 TTGGCTGATAAGAGTAGATATCCCATTTCTTCATTTGGGGAAGATCCTCAGCGACAGAGT 699
|||| || |||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 626 TTGGGAGAGAAGAGTAGATATCCCATTTCTTCATTCGGGGAAGATCCTCAGCGACCGAGT 685
Query 700 TTCATGCAACTGAGTCCAAAGCCTTGGGATAAGCAAATCATGAATGCTGAGCAGCTTCTT 759
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 686 TTCATGCATTTGAGTCCAAAGCCTTGGGATAAGCAAATCATGAATGCTGAGCAGCTGCTT 745
Query 760 GGGAATGACAGGGAAAGAAACCCTTTTAGTGGGAAATCTCGACATGGCTTTGTTAACGAC 819
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 746 GGGAATGACAGGGAAAGAAACCCTTTCAGTGGGAAATCTCGACATGGGTTTGTTAACGAA 805
Query 820 ATGATTACTGAGAGTCCAGGGGATATGGAGGTGAACCCTGTGGATTTTCTCGCTTCTCAG 879
||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 806 ATGATTACTGAGAGTGCAGGGGAAATGGAGGTGAACCCTGTGGATTTTCTTGCTTCTCAG 865
Query 880 TTCCCCGGATTCGCCGCTGAGAGTCTAGCAGAAGTTTATTTTGCTAATGGGTGTGATTTG 939
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 866 TTCCCTGGATTCGCCGCTGAAAGTCTAGCAGAGGTTTATTTTGCTAATGGGTGTGATTTG 925
Query 940 CAGTTGACAATTGAGATGCTTACTCAGCTTGAGCTACAAGTGGATGGTGGCTTGAATCAA 999
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 CAGTTGACAGTTGAGATGCTTACTCAGCTTGAGCTACAAGTGGATGGTGGCTTGAATCAG 985
Query 1000 AACATAAGCCCTAAGACTTATGCTCCTCCTAGTCTAACTCCAATGGATTTTCCTGCACTA 1059
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||
Sbjct 986 AACATAAGCCCTAAGAGTTATGCTCCTCCTAGTCTAACTCCCATGGATTTTCCTGCCCTA 1045
Query 1060 AGCATCTCAAATAGCCATGGTATTCCTGCCCAGTTTGGTGGGGATGATTTGCAACAAACT 1119
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1046 AGCATCTCAAATAGCCATGGTATTCCTGCTCAGTTTGGTGGGGATGATTTGCAACAAACT 1105
Query 1120 GGAAATCATTACCAATCTCCTGAAAAGGATAACATGTTCTTCTTCAAGTCGGGACCATCG 1179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 GGAAATCATTACCAATCTCCTGAAAAGGATAACATGTTCTTCTTCAAGTCGGGACCATCA 1165
Query 1180 GTTTCTCAGCCTGGTGCAATCGATTATGTTTCTGCTGTCAGGAAGTTAGCATCTCAGGAT 1239
||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1166 GTTACTCAGCCCGGTTCAATCGATTATGTTTCTGCTGTCAGGAAGTTAGCATCTCCGGAT 1225
Query 1240 TCTGGTATGTGGAAATATGAACGAAATGATTCAGCAGACTCATCTATTGGCTCTAGCAGG 1299
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1226 TCTGGTATGTGGAAATATGAACGAAACGATTCAGCAGACTCATCTATTGGCTCTAGCAGG 1285
Query 1300 AATTCTGGTGCTTACAAAAGTGGCCGTGGGAGGAGTATATATTCTGATAAGCTGCAAAGT 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1286 AATTCTGGTGCTTACAAAAGTGGCCGTGGGAGGAGTATATATTCTGATAAGCTGCAAAGT 1345
Query 1360 CGAGCCCAAACTCGACCTGCTCCTGTTTGGGTGGAGACCGGGGATGCTGTTGGCAATATG 1419
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1346 CGAGCCCAAACTCGACCTGCTCCTGTCTGGGTGGAGACCGGGGATGCTGTTGGCAATATG 1405
Query 1420 TATTCTGAGTTACGCGAGGAAGCACGTGACTATGCACGTTTGCGGAATGTGTACTTTGAA 1479
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1406 TATTCTGACTTACGCGAGGAAGCACGTAACTATGCACGTTTGCGGAATGTGTACTTTGAA 1465
Query 1480 CAGGCACGACAAGCATACCTTGTTGGGAATAAGGCCTTAGCCAAAGAGCTAAGTGTTAAG 1539
|||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 1466 CAGGCACGGCAAGCATACCTTGTTGGCAATAAGGCCTTAGCTAAAGAGCTAAGTGTCAAG 1525
Query 1540 GGACAGTTGCATAATATGCAAATGAAGGCTGCTCATGGGAAAGCTCAAGAAGCCATTTAC 1599
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1526 GGACAGTTGCATAACATGCAAATGAAAGCTGCTCATGGGAAAGCTCAAGAAGCCATTTAC 1585
Query 1600 CGCCAGAGGAACCCAGTGGGTCAAGGAAACAGTAGAGGGAATGAGAGAATGATAGACTTG 1659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1586 CGCCAGAGGAACCCAGTGGGTCAAGGAAACAGTAGAGGGAATGAGAGAATGATAGACTTG 1645
Query 1660 CATGGGTTACATGTGAGTGAAGCACTTCAGGTGTTGAAGCACGAACTGAGTGTGTTGAGG 1719
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1646 CATGGGTTACATGTGAGTGAAGCTCTTCAGGTGTTGAAGCACGAACTGAGCGTGTTGAGG 1705
Query 1720 AGCACAGCTCGAGCAACGCAAGAGAGGCTTCAGATTTACATATGTGTAGGGACAGGCCAC 1779
||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||
Sbjct 1706 AGCACAGCTCGAGCAACGCAAGAAAGGCTTCAGGTTTTCATATGTGTAGGGACAGGCCAC 1765
Query 1780 CACACAAGGGGTTCCCGCACTCCGGCTAGACTCCCAGTTGCTGTACAGCGCTACCTACTC 1839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1766 CACACAAGGGGTTCCCGCACTCCGGCTAGACTCCCAGTTGCTGTACAGCGCTACCTACTC 1825
Query 1840 GAAGAAGAAGGTCTTGACTATTCCGAACCACAGGCCGGTCTCCTTAGAGTCATCATATAC 1899
||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 1826 GAAGAAGAAGGCCTTGACTATTCCGAGCCGCAGGCTGGTCTCCTTAGAGTCATCATATAC 1885
Query 1900 TGACAGACAAAAGCCAGGTACTTATATAGGATACA-AGACCGGaaaagaaaacaaaaaaa 1958
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1886 TGACAGACAAAAGCCAGGTACTTATATAGGATACACA-ACCGGAAAAGAAAACAAAAAAA 1944
Query 1959 aGGA--AA-GGTGACCACGCTATTCATTTGTTGTATCTGATCTGTACATGGGAAGAGAGG 2015
| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1945 AAGACTAAAGGTGACCACGCTATTCATTTGTTGTATCTGATCTGTACATGGGA------- 1997
Query 2016 AGAAAGAGACTAGCTGAAAATGAAGAAGGaaaaaaaaaaGTGTTAGGAAAGAGATCCGCA 2075
||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 1998 ---------CTAGCTGAAAATGAAGAAGGAAAAATAA--GTGTTAGGAAAGAGATCTGCA 2046
Query 2076 AGAAGGAAGGAACGAAGGCGTATGCATAAAATGTTTAGGTTTGTTCAGTTAATACTTTTT 2135
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2047 AGAAGGAAGGAATGAAGGCGTATGTATAAAATGTTTAGGTTTGTTCAGTTAATACTTTTT 2106
Query 2136 GTAGCATCAGAGGATCGATCAGACCTCTTTCTATCTTTTTGTCGGGATCTATACGATGTT 2195
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 2107 GTAGCATCAGAGGATCGATC---C-TCTTTCTATCTTTTTGTCGGGATCTATACGATGTT 2162
Query 2196 TTGTTGATTCTCGGTGCttttttttttttACAGTTTTACTCTATATGTTATACTCCTTTC 2255
|||||||||||| || |||||||| |||||||||||||||||| ||||||||||||
Sbjct 2163 TTGTTGATTCTCTGTACTTTTTTT-----ACAGTTTTACTCTATATGCTATACTCCTTTC 2217
Query 2256 TTCTGGAAATGCTTATATTTGTAATTCTCTTAGATTTAATGTGC 2299
|||||||||| || ||||||||||||||||||||||||||||||
Sbjct 2218 TTCTGGAAATTCTCATATTTGTAATTCTCTTAGATTTAATGTGC 2261
Score = 62.1 bits (33), Expect = 2e-08
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 1 GCTCGTGTTACCTCTTTAGCCAAACAACACCCC 33
|||||||||||||||||||||||||||||||||
Sbjct 1 GCTCGTGTTACCTCTTTAGCCAAACAACACCCC 33
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87074300070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5