BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26290.1
Length=1375
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481488 jgi|Araly1|481488|fgenesh2_kg.4__548__AT2G26290.1 2050 0.0
> Ahg481488 jgi|Araly1|481488|fgenesh2_kg.4__548__AT2G26290.1
Length=1333
Score = 2050 bits (1110), Expect = 0.0
Identities = 1234/1294 (95%), Gaps = 7/1294 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGTGTTCAAGAAGAAGAAAACATCATTGACATCTCTGTTCTTGGGGTGTTACAAG 60
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAGTGATCAAGAAGAAGAAGACATCATTGACATCTCTGTTCTTGGGGTGTTACAAG 60
Query 61 GCAAAGAACGCAAGCAAATACGAAGGAGGGGAGAAGGCTGTAATGAAAATAAGAACTTGT 120
|||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 61 GCAAAGAACGCAAGAAAATACGAAGGAGAGGAGAATTCTGTAATGAAAATAAGAACTTGT 120
Query 121 CCAGCGTTCAAGAGGCTGTCTTTATCGGACATAAGCGATCCAAGCTCGCCCATGTCGGTT 180
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCGGCGTTCAAGAGGCTGTCTTTATCGGACATAAGCGATCCAAGCTCGCCCATGTCGGTC 180
Query 181 ATGGATGATCTCTCTCACTCCTTCACATCGCAGAAGCTTCGTTTGTTCACGTTGTCTGAG 240
||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 181 ATGGATGATCTCTCTCATTCCTTCACATCTCAGAAGCTTCGTTTATTCACGTTGTCTGAG 240
Query 241 CTGAGAGTGATTACGCATAATTTCTCTAGAAGTAACATGTTGGGGGAAGGAGGGTTTGGG 300
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 241 CTGAGAGTGATTACGCATAATTTCTCAAGAAGTAACATGTTGGGCGAAGGAGGGTTTGGG 300
Query 301 CCGGTTTACAAAGGGTTTATTGATGATAAGGTTAAACCGGGTATCGAAGCCCAACCGGTT 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 CCGGTTTACAAAGGGTTTATTGATGATAAGGTTAAACCGGGTATCAAAGCCCAACCGGTT 360
Query 361 GCTGTAAAGGCTCTTGATCTTCATGGCCATCAAGGCCATAGAGAATGGCTGGCGGAGATA 420
|| || |||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 361 GCGGTTAAGGCTCTTGATCTCCATGGCCATCAAGGTCATAGAGAATGGCTGGCGGAGATA 420
Query 421 TTATTTTTGGGACAACTAAGTAACAAACATCTTGTGAAGCTGATAGGGTTTTGTTGTGAA 480
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 421 ATATTTTTGGGACAACTAAGTAACAAACATCTTGTGACGCTAATAGGGTTTTGTTGTGAA 480
Query 481 GAAGAGCAAAGAGTTCTTGTTTATGAGTACATGCCTCGAGGTAGCTTGGAGAATCAGCTC 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GAAGAGCAAAGAGTGCTTGTTTATGAGTACATGCCTCGAGGTAGCTTGGAGAATCAGCTC 540
Query 541 TTTCGAAGAAATAGCTTAGCAATGGCTTGGGGAATAAGGATGAAGATAGCTCTCGGAGCC 600
|||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 541 TTTCGAAGAAATAGCTTAGCAATGGCTTGGGGAATAAGGATGAAAATAGCCCTTGGAGCA 600
Query 601 GCCAAAGGTTTAGCTTTTCTCCATGAAGCAGAGAAACCTGTCATCTACAGAGACTTTAAA 660
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 601 GCCAAAGGTTTAGCTTTTCTCCATGAAGCAGAGAAACCAGTCATCTACAGAGACTTTAAA 660
Query 661 ACCTCTAACATATTGTTAGACTCCGACTATAACGCCAAATTATCTGACTTCGGTCTAGCC 720
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 661 ACCTCTAACATATTGTTAGACTCTGACTATAACGCCAAATTATCTGACTTCGGTCTAGCC 720
Query 721 AAAGATGGACCTGAAGGCGAACATACGCATGTAACTACCCGAGTGATGGGAACACAAGGT 780
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 721 AAAGATGGACCTGAAGGCGAACATACGCATGTAACAACCCGAGTGATGGGAACACAAGGT 780
Query 781 TATGCTGCGCCCGAATATATCATGACTGGTCATTTGACGACGATGAATGATGTATACAGT 840
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TATGCTGCGCCGGAATATATCATGACTGGTCATTTGACGACGATGAATGATGTATACAGT 840
Query 841 TTTGGAGTAGTTTTGTTAGAGCTGATAACCGGAAAACGGTCAATGGACAATACCCGAACA 900
|||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 841 TTTGGAGTAGTTTTGTTAGAACTGATAACCGGGAAACGGTCAATGGACAACACCCGAACA 900
Query 901 CGGAGGGAACAAAGCCTAGTGGAATGGGCGCGGCCTATGTTAAGGGACCAAAGAAAGTTA 960
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 901 CGGAGGGAACAAAGCCTCGTGGAATGGGCGCGGCCCATGTTAAGGGACCAAAGAAAGTTA 960
Query 961 GAGAGGATAATTGACCCGAGGCTCGCGAACCAGCACAAAACAGAAGCGGCTCAGGTAGCT 1020
||| || |||||||||| ||||||| ||||||| |||||| |||||||||||||||||||
Sbjct 961 GAGCGGGTAATTGACCCAAGGCTCGAGAACCAGTACAAAATAGAAGCGGCTCAGGTAGCT 1020
Query 1021 GCTTCCCTAGCATACAAGTGTCTAAGCCAACATCCTAAGTATAGACCTACAATGTGTGAG 1080
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ACTGCCCTAGCATACAAGTGTCTAAGCCAACATCCTAAGTATAGACCTACAATGTGTGAG 1080
Query 1081 GTGGTTAAGGTCTTAGAGTCTATCCAAGAAGTTGATATTA-GGAAGCATGATGGCAATAA 1139
||||||||||||||||||||||| ||||||||||| |||| ||| || |||||| |||
Sbjct 1081 GTGGTTAAGGTCTTAGAGTCTATTCAAGAAGTTGAGATTATGGA-GCGTGATGG---TAA 1136
Query 1140 CAACAAAGAAGGAAAGAAGTTTGTTGATATAAATAAGTTTAGGCATCACCGTAAAGG-CA 1198
|||||||||||||||||||| |||||||||||| |||||||||||||| |||||||| ||
Sbjct 1137 CAACAAAGAAGGAAAGAAGTATGTTGATATAAAAAAGTTTAGGCATCAGCGTAAAGGACA 1196
Query 1199 AAAGACGTGTGAACATCGCTTATTCAGATTCTCTCGTTTACAAGGAATCCAAGGCAAAGC 1258
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 AA-GACTTGTGAACATCGCTTATTCAGATTCTCTCGTTTACAAGGAATCCAAGGCAAAGC 1255
Query 1259 AAAACGATGGCATTTGAAATACATCATTTTCTCA 1292
||||| ||||| ||||||||||||||||| ||||
Sbjct 1256 AAAACAATGGCGTTTGAAATACATCATTTCCTCA 1289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51465937950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5