BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26300.1
Length=2034
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481489 jgi|Araly1|481489|fgenesh2_kg.4__549__AT2G26300.1 2479 0.0
> Ahg481489 jgi|Araly1|481489|fgenesh2_kg.4__549__AT2G26300.1
Length=1910
Score = 2479 bits (1342), Expect = 0.0
Identities = 1774/1966 (90%), Gaps = 96/1966 (5%)
Strand=Plus/Plus
Query 27 AATGCATATAGGTTCCGTAATTAATCTTCTTTATCGTCACGAGAGGCACATCTTTTTTCA 86
||||||||||| ||||||||||||||||| ||||| |||||||||||||||| ||||||
Sbjct 1 AATGCATATAGATTCCGTAATTAATCTTC-TTATCTTCACGAGAGGCACATC--TTTTCA 57
Query 87 ACATTTGACCActctctctctctctctctcAGGACCTTTCGGCGTAATTTCGTCTTCCCc 146
||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 58 ACATTTGACCA----------------CT-AGGACCTTTCGGCGTAATTTCGTCTTCCCC 100
Query 147 tttgcttaaca-tt-ttctttctttctttttgaccaaatattaaaaatatatccattttt 204
||||||||||| || |||||||||||||| |||| || | | ||||||| | | ||||
Sbjct 101 TTTGCTTAACATTTCTTCTTTCTTTCTTTACGACC-AA-A-T-AAAATAT-T--A-TTTT 152
Query 205 attttatttttaattaaattcataatttgcattttatgtat-ttataata-aAAAGGAGA 262
| | || |||| |||| || | | | | | || || | |||| |||| | |
Sbjct 153 A----A--TTAAATT-AATT-AT-GTAT-C--TCTCTG-ATAAAAAAATACAAAA-TACA 198
Query 263 GA-ATAAATCCAAAAGAGTGAAGCAAAAACATTAAAGCGGAAAGAAAGTGGTAAAACAAT 321
| ||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||
Sbjct 199 TAGATAAATCCAAAAGAGTGAAGC-AAAACATTGAAGCGGAAAGAAAGTGGT-AAACAAT 256
Query 322 AATAGAAACAGGAGAAGCAGAAGTACTActtcttcttcttctgctctcttctcagacctt 381
|||||||||||||||||||| | |||| | |||||||||||||||||||||||||||||
Sbjct 257 AATAGAAACAGGAGAAGCAG-A--ACTAGTACTTCTTCTTCTGCTCTCTTCTCAGACCTT 313
Query 382 gttttgtactttcttcttcttcttcttcttcttGTTTGCGAACTCCGATATCTTCTTCAC 441
||||||||| | |||||||||||||||||| || || ||||||||||||
Sbjct 314 GTTTTGTAC--T-TTCTTCTTCTTCTTCTTC----TT-----CT----TATCTTCTTCAC 357
Query 442 TACCTTTGACTCCATTTCTTTTT-CTTCTTCAGGTGTAGGC-A-TTGT--C-TTGTTATG 495
||||||||||||||||||||||| | |||||||||| | | | || | | || |||
Sbjct 358 TACCTTTGACTCCATTTCTTTTTGC-TCTTCAGGTGAATTCTACTTTTACCTTTTTTACC 416
Query 496 AGAAGCAACTGTAGCTGGAAGCTCAAGTATTTGTTTTTAGCT-GTGGAGCTTGAATCTTG 554
|| ||| | | ||| || || ||| ||| ||| | ||| |||||||||||||
Sbjct 417 CCAACCAAAT-TTGCT--CTTCT-GGGT-TTTATTTATAG-TGGTGAAGCTTGAATCTTG 470
Query 555 ATAGTTTTCGACTTCTATGTTATTACCTGTGGGGATATAGAAACAATCATGGGCTTACTC 614
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 471 ATAGTTTTCGACTTCCATGCTATTACCTGTGGGGATATAGAAACAATCATGGGCTTACTC 530
Query 615 TGCAGTAGAAGTCGACATCATACTGAAGATACTGATGAGAATACACAGGCTGCTGAAATC 674
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 531 TGCAGTAGAAGTCGACATCATACTGAAGATACTGATGAGAATACACAGGCAGCTGAAATC 590
Query 675 GAAAGACGGATAGAGCAAGAAGCAAAGGCTGAAAAGCATATTCGGAAGCTTTTGCTACTT 734
||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||
Sbjct 591 GAAAGACGGATAGAGCAAGAAGCAAAGGCCGAAAAGCATATTCGGAAGCTACTACTACTT 650
Query 735 GGTGCTGGGGAATCTGGAAAATCTACAATTTTTAAGCAGATAAAACTTCTATTCCAAACG 794
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 651 GGTGCTGGAGAATCTGGAAAATCTACAATTTTTAAGCAGATAAAACTTCTCTTTCAAACG 710
Query 795 GGATTTGATGAAGGAGAACTAAAGAGCTATGTTCCAGTCATTCATGCCAATGTCTATCAG 854
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 711 GGATTTGATGAAGGAGAACTAAAGAGCTATGTTCCAGTCATCCATGCCAATGTCTATCAC 770
Query 855 ACTATAAAATTATTGCATGATGGAACAAAGGAGTTTGCTCAAAATGAAACAGATTCTGCT 914
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 771 ACTATAAAATTATTGCATGATGGAACAAAGGAGTTTGCTCAAAATGAAGCAGATTCTGCA 830
Query 915 AAATATATGTTATCTTCTGAAAGTATTGCAATTGGGGAGAAACTATCTGAGATTGGTGGT 974
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 AAATATATGTTATCCTCTGAAAGTATTGCAATTGGGGAGAAACTATCTGAGATTGGTGGT 890
Query 975 AGGTTAGACTATCCACGTCTTACCAAGGACATCGCTGAGGGAATAGAAACACTATGGAAG 1034
|||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 891 AGGTTAGACTATCCGCGTCTTACCAAGGACCTCGCTGAGGGAATCGAAACACTATGGAAG 950
Query 1035 GATCCTGCAATTCAGGAAACTTGTGCTCGTGGTAATGAGCTTCAGGTTCCTGATTGTACG 1094
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 951 GATCCTGCAATTCAGGAAACATGTGCTCGTGGTAATGAGCTTCAGGTTCCTGATTGTACA 1010
Query 1095 AAATATCTGATGGAGAACTTGAAGAGACTATCAGATATAAATTATATTCCAACTAAGGAG 1154
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1011 AAATATCTGATGGAGAACTTGAAGAGACTATCAGATATAAATTATATTCCAACAAAGGAA 1070
Query 1155 GATGTACTTTATGCAAGAGTTCGCACAACTGGTGTCGTGGAAATACAGTTCAGCCCTGTG 1214
||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1071 GATGTTCTCTATGCAAGAGTTCGCACAACTGGTGTCGTGGAAATACAGTTCAGCCCCGTG 1130
Query 1215 GGAGAGAATaaaaaaaGTGGTGAAGTGTACCGATTGTTTGACGTGGGTGGACAGAGAAAT 1274
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1131 GGAGAGAATAAGAAAAGTGGTGAAGTGTACCGATTATTTGACGTGGGTGGACAGAGAAAT 1190
Query 1275 GAGAGGAGGAAATGGATTCATCTGTTTGAAGGTGTAACAGCTGTGATATTTTGTGCTGCC 1334
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1191 GAGAGGAGGAAATGGATTCATCTGTTCGAAGGTGTAACTGCTGTGATATTTTGTGCTGCC 1250
Query 1335 ATCAGCGAGTACGACCAAACGCTCTTTGAGGACGAGCAGAAAAACAGGATGATGGAGACC 1394
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 ATTAGCGAGTACGACCAAACGCTCTTTGAGGACGAGCAGAAAAACAGGATGATGGAGACC 1310
Query 1395 AAGGAATTATTCGACTGGGTCCTGAAACAACCCTGTTTTGAGAAAACATCCTTCATGCTG 1454
|| ||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1311 AAAGAATTATTCGATTGGGTCCTGAAACAGCCCTGTTTCGAGAAAACATCCTTCATGCTG 1370
Query 1455 TTCTTGAACAAGTTCGACATATTTGAGAAGAAAGTTCTTGACGTTCCGTTGAACGTTTGC 1514
|||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct 1371 TTCTTGAACAAGTTCGACATATTTGAGAAGAAGGTTCTTGATGTTCCGTTAAACGTTTGC 1430
Query 1515 GAGTGGTTCAGAGATTACCAACCAGTTTCAAGTGGGAAACAAGAGATTGAGCATGCATAC 1574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 GAGTGGTTCAGAGATTACCAACCAGTTTCAAGTGGGAAACAAGAGATTGAGCATGCATAC 1490
Query 1575 GAGTTTGTGAAGAAGAAGTTTGAGGAGTTATATTACCAGAACACGGCGCCGGATAGAGTG 1634
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 1491 GAGTTTGTGAAGAAGAAGTTTGAGGAATTATATTACCAAAACACGGCTCCGGATAGAGTG 1550
Query 1635 GACAGGGTATTCAAAATCTACAGGACGACGGCTTTGGACCAGAAGCTTGTAAAGAAAACG 1694
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 GACAGGGTATTCAAAATCTACAGGACGACGGCTTTGGACCAGAAGCTTGTAAAGAAAACA 1610
Query 1695 TTCAAGCTCGTAGATGAGACACTAAGAAGGAGAAATTTACTGGAGGCTGGCCTTTTATGA 1754
||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1611 TTCAAACTCGTAGATGAGACACTAAGAAGGAGAAATCTATTGGAGGCTGGCCTTTTATGA 1670
Query 1755 CCTTATTATTACATATCTCTAGTAAATTACCTCTCCTTATTATTATAAGAAAAACTCGAA 1814
||||||||||||||||||| ||||||||||||||| ||||| | | |||||| ||||
Sbjct 1671 CCTTATTATTACATATCTCAAGTAAATTACCTCTC---ATTAT-A-A-GAAAAATTCGAT 1724
Query 1815 AACTGAATGACCGTGTAATTTATCTTTCGGGACAAAAGACTTAGCGATTCAAAATCTAAT 1874
|||| ||||||||||||||| |||| |||||||||| ||||| |||||||||||||||||
Sbjct 1725 AACTAAATGACCGTGTAATTGATCTGTCGGGACAAA-GACTTGGCGATTCAAAATCTAAT 1783
Query 1875 GTGTCTCGA-TGG-CTACGACTAGTTTCTATTTTATCATTGTTTTTGTT-AACATTCCTC 1931
| ||||||| ||| || ||||||||||||||||| |||||||||| ||| ||||||||||
Sbjct 1784 GCGTCTCGAATGGGCTCCGACTAGTTTCTATTTTCTCATTGTTTT-GTTTAACATTCCTC 1842
Query 1932 TGTCTTTGACTTCTTAtttttttttCTCATCAAAAACATCTCATTT 1977
|||||||| |||| |||| ||||| | ||||||| ||||||||||
Sbjct 1843 TGTCTTTGGCTTCATATTGTTTTT-C--ATCAAAAGCATCTCATTT 1885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76485211960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5