BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26310.1
Length=1652
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481490 jgi|Araly1|481490|fgenesh2_kg.4__550__AT2G26310.1 1842 0.0
> Ahg481490 jgi|Araly1|481490|fgenesh2_kg.4__550__AT2G26310.1
Length=1284
Score = 1842 bits (997), Expect = 0.0
Identities = 1215/1315 (92%), Gaps = 36/1315 (3%)
Strand=Plus/Plus
Query 223 TGTCAAATATGGATCCTAATTCAGTTTTACCTAAGAGAAGTTTCTTACAAC-ATGAGTTG 281
|||||||||||||||| |||||||||||||| ||||| |||||||||| || ||||||||
Sbjct 1 TGTCAAATATGGATCCCAATTCAGTTTTACCAAAGAGGAGTTTCTTAC-ACAATGAGTTG 59
Query 282 TTTTCACAATTACATATACCTGGAAGCTTAGCTTTCGAAGCATTTAGTTGTATCTCTAAG 341
||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 60 TTTTCGCAATTACATATACCCGGAAGCTTCGCTTTCGAAGCATTTAGTTGTATCTCCAAG 119
Query 342 TTTACAGGAGCTTTGCTTTGTTGGTTTTCACATGGAAACTTGCAAAAAGAAGTATCTAAA 401
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 120 TTTACAGGAGCTTTGCTTTGTTGGTTTTCACATGGGAACTTGCAAAAGGAAGTATCTAAA 179
Query 402 CATCAATGGGGATTAACTTGTAAGAGC-CGTGATTCTT-TAAAACATGTGTTTGAACATA 459
||||||||||||||||||||||||||| | |||||||| || | || ||||||| |||
Sbjct 180 CATCAATGGGGATTAACTTGTAAGAGCTC-TGATTCTTCGAAGA-ATTTGTTTGAGCATC 237
Query 460 GGAACGTCTCTGTGTTCCCATTTCACTATGTATCAAAAGATATTAGTCCTGGCTTCTTTG 519
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 238 GGAACTTCTCTGTGTTCCCATTTCACTATGTATCAAAAGATATTACTCCTGGCTTCTTTG 297
Query 520 GAAACATATCTAAATCCACTATTCAGCATTTTGTTAATGAAGCTGAGAGGCTACATTCGT 579
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GAAGTATTTCTAAATCCACTATTCAGCATTTTGTTAATGAAGCTGAGAGGCTACATTCGT 357
Query 580 GTTCTTTGCTCTCTTTGGCGGCTGCGATGATACCGTCTTTGAATGTCATGTCTGCAAATG 639
||||| ||||||| ||||| || ||| ||||||||||||||||||| |||||||| |||
Sbjct 358 GTTCTGTGCTCTCCTTGGCTGCGGCGTTGATACCGTCTTTGAATGTTATGTCTGCTTATG 417
Query 640 GACTTGCTCTGCCACTAGGGAGTAATGATGTTAAACTTAGGGAGAACATTGAACATAGGA 699
||| ||||||||| ||||||||| | ||| | | | || | | |
Sbjct 418 GACATGCTCTGCCTCTAGGGAGT-A--ATG----A--T-----G----TT---C--A--A 452
Query 700 CTTGTCCGGAGAACA-CTGAACATAGGACTTGTCAGGTGGGATGTGAAGAATATAGTGGT 758
||| | ||||||| | | ||| |||||||||||||||| ||| ||| ||||||||||||
Sbjct 453 CTT-T-CGGAGAATACCGGAA-ATAGGACTTGTCAGGTTGGACATGAGGAATATAGTGGT 509
Query 759 TTGAGTTTTCAAAAATTAGACTGGACAAGACAATCAGTGGAGCCTAGGACGGGGATCGAG 818
||||||||||| ||||||||||||||||||||| ||||||||||| | || |||||||||
Sbjct 510 TTGAGTTTTCACAAATTAGACTGGACAAGACAAACAGTGGAGCCTCGAACAGGGATCGAG 569
Query 819 TTCCCGATGTTGTTGAAGGAGAATGCTTCGCGATCGAATTCTGAGGTGCTTGTTGCAACG 878
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 TTCCCGATGTTGTTGAAGGAGAATGCTTCGCGATCGAATTCTGAGGTGCTTGTTGCAACT 629
Query 879 GGATCTCGGACAATGAAAATTATCAGAATTAAATCTCTAAAAGTATATGCATTTGGTTTT 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 GGATCTCGGACAATGAAAATTATCAGAATTAAATCTCTAAAAGTATATGCATTTGGTTTT 689
Query 939 TATGTTCACCCTTCCTCGGTCTGTCAGAAGCTTGGCCGAAAGTATGCCTCGGTTCCAGCA 998
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 690 TATGTTCATCCTTCCTCGGTCTGCCAGAAGCTTGGCCGAAAGTATGCCTCGGTTCCAGCG 749
Query 999 AGCAAACTTGACAAATGCGATGACTTATACAAAGACCTTCTTAGGGAGGATATTGTTATG 1058
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 AGCAAACTTGAAAAATGCGATGACTTATACAAAGACCTTCTTAGGGAGGATATTGTTATG 809
Query 1059 AGTGTGAGGCTTGTGGTTAACTACAATGGCTTGAAGATCAATACTGTGAGAGATGTTTTC 1118
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 AGTGTGAGGCTTGTGGTTAACTACAATGGCTTGAAGATCAATACTGTGAGAGATGTTTTT 869
Query 1119 GAGAAATCTCTGCGTGCTCGCTTGGTTAAGGCAAATCCAAAAACTGATTTCAATTGTTTG 1178
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 870 GAGAAATCTCTGCGTGCTCGTTTGGTGAAGGCAAATCCAAAAACTGATTTCAATTGTTTG 929
Query 1179 AATGATTTTGGTTCATTCTTTAGACAAGACATTCCAATACCCGCGGGAACAATAATAGAC 1238
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 930 AATGATTTTGGTTCATTCTTCAGACAAGACATTCCAATACCCGCTGGAACAATAATAGAC 989
Query 1239 TTTCGGCGAACAGAAGATGGACAGCTAATCACAGAGATTGGTGGTAACCTGATTGGAGCT 1298
||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 990 TTTCGACGAACAGAAGATGGACAACTAATCACAGAGATTGGCGGTAACCTGATTGGCGCT 1049
Query 1299 GTCCGAAGCAAGGATCTTTGCAGAGCATTTTTTGGTATGTACATTGGAGATGTTCCGGTG 1358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 GTCCGAAGCAAGGATCTTTGCAGAGCATTTTTTGGTATGTACATTGGAGATGTTCCGGTG 1109
Query 1359 TCAGAGCAGACAAAGGAGGAGATTGGTAGAAAAGTGGTGGGAATCATAAAGAGATGCTGA 1418
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1110 TCAGAGCAGACAAAGGAGGAGATTGGTAGGAAAGTGGTGGGAATCATAAAGAGATGCTGA 1169
Query 1419 AATCAATTACTTGTTAGATTTCCAATTGCCTCTGAGTTTTAGAAGAAGGCAATTGGGTTA 1478
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1170 AATCAATTACTTGTTAGACGTCCAATGGCCTCTGAGTTTTAGAAGAAGGCAATTGGGTTA 1229
Query 1479 GATTTACGCGGTCATGTCTAGATATTGTCAA-TCAAAATACTTTGTAAGCAGCTT 1532
||||||||| ||||||||||| | |||| || ||||| ||||||| |||||||||
Sbjct 1230 GATTTACGCAGTCATGTCTAGCTGTTGTTAAATCAAATTACTTTGAAAGCAGCTT 1284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61934738370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5