BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G26310.1 Length=1652 Score E Sequences producing significant alignments: (Bits) Value Ahg481490 jgi|Araly1|481490|fgenesh2_kg.4__550__AT2G26310.1 1842 0.0 > Ahg481490 jgi|Araly1|481490|fgenesh2_kg.4__550__AT2G26310.1 Length=1284 Score = 1842 bits (997), Expect = 0.0 Identities = 1215/1315 (92%), Gaps = 36/1315 (3%) Strand=Plus/Plus Query 223 TGTCAAATATGGATCCTAATTCAGTTTTACCTAAGAGAAGTTTCTTACAAC-ATGAGTTG 281 |||||||||||||||| |||||||||||||| ||||| |||||||||| || |||||||| Sbjct 1 TGTCAAATATGGATCCCAATTCAGTTTTACCAAAGAGGAGTTTCTTAC-ACAATGAGTTG 59 Query 282 TTTTCACAATTACATATACCTGGAAGCTTAGCTTTCGAAGCATTTAGTTGTATCTCTAAG 341 ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct 60 TTTTCGCAATTACATATACCCGGAAGCTTCGCTTTCGAAGCATTTAGTTGTATCTCCAAG 119 Query 342 TTTACAGGAGCTTTGCTTTGTTGGTTTTCACATGGAAACTTGCAAAAAGAAGTATCTAAA 401 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 120 TTTACAGGAGCTTTGCTTTGTTGGTTTTCACATGGGAACTTGCAAAAGGAAGTATCTAAA 179 Query 402 CATCAATGGGGATTAACTTGTAAGAGC-CGTGATTCTT-TAAAACATGTGTTTGAACATA 459 ||||||||||||||||||||||||||| | |||||||| || | || ||||||| ||| Sbjct 180 CATCAATGGGGATTAACTTGTAAGAGCTC-TGATTCTTCGAAGA-ATTTGTTTGAGCATC 237 Query 460 GGAACGTCTCTGTGTTCCCATTTCACTATGTATCAAAAGATATTAGTCCTGGCTTCTTTG 519 ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 238 GGAACTTCTCTGTGTTCCCATTTCACTATGTATCAAAAGATATTACTCCTGGCTTCTTTG 297 Query 520 GAAACATATCTAAATCCACTATTCAGCATTTTGTTAATGAAGCTGAGAGGCTACATTCGT 579 ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 GAAGTATTTCTAAATCCACTATTCAGCATTTTGTTAATGAAGCTGAGAGGCTACATTCGT 357 Query 580 GTTCTTTGCTCTCTTTGGCGGCTGCGATGATACCGTCTTTGAATGTCATGTCTGCAAATG 639 ||||| ||||||| ||||| || ||| ||||||||||||||||||| |||||||| ||| Sbjct 358 GTTCTGTGCTCTCCTTGGCTGCGGCGTTGATACCGTCTTTGAATGTTATGTCTGCTTATG 417 Query 640 GACTTGCTCTGCCACTAGGGAGTAATGATGTTAAACTTAGGGAGAACATTGAACATAGGA 699 ||| ||||||||| ||||||||| | ||| | | | || | | | Sbjct 418 GACATGCTCTGCCTCTAGGGAGT-A--ATG----A--T-----G----TT---C--A--A 452 Query 700 CTTGTCCGGAGAACA-CTGAACATAGGACTTGTCAGGTGGGATGTGAAGAATATAGTGGT 758 ||| | ||||||| | | ||| |||||||||||||||| ||| ||| |||||||||||| Sbjct 453 CTT-T-CGGAGAATACCGGAA-ATAGGACTTGTCAGGTTGGACATGAGGAATATAGTGGT 509 Query 759 TTGAGTTTTCAAAAATTAGACTGGACAAGACAATCAGTGGAGCCTAGGACGGGGATCGAG 818 ||||||||||| ||||||||||||||||||||| ||||||||||| | || ||||||||| Sbjct 510 TTGAGTTTTCACAAATTAGACTGGACAAGACAAACAGTGGAGCCTCGAACAGGGATCGAG 569 Query 819 TTCCCGATGTTGTTGAAGGAGAATGCTTCGCGATCGAATTCTGAGGTGCTTGTTGCAACG 878 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 570 TTCCCGATGTTGTTGAAGGAGAATGCTTCGCGATCGAATTCTGAGGTGCTTGTTGCAACT 629 Query 879 GGATCTCGGACAATGAAAATTATCAGAATTAAATCTCTAAAAGTATATGCATTTGGTTTT 938 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 630 GGATCTCGGACAATGAAAATTATCAGAATTAAATCTCTAAAAGTATATGCATTTGGTTTT 689 Query 939 TATGTTCACCCTTCCTCGGTCTGTCAGAAGCTTGGCCGAAAGTATGCCTCGGTTCCAGCA 998 |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 690 TATGTTCATCCTTCCTCGGTCTGCCAGAAGCTTGGCCGAAAGTATGCCTCGGTTCCAGCG 749 Query 999 AGCAAACTTGACAAATGCGATGACTTATACAAAGACCTTCTTAGGGAGGATATTGTTATG 1058 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 750 AGCAAACTTGAAAAATGCGATGACTTATACAAAGACCTTCTTAGGGAGGATATTGTTATG 809 Query 1059 AGTGTGAGGCTTGTGGTTAACTACAATGGCTTGAAGATCAATACTGTGAGAGATGTTTTC 1118 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 810 AGTGTGAGGCTTGTGGTTAACTACAATGGCTTGAAGATCAATACTGTGAGAGATGTTTTT 869 Query 1119 GAGAAATCTCTGCGTGCTCGCTTGGTTAAGGCAAATCCAAAAACTGATTTCAATTGTTTG 1178 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 870 GAGAAATCTCTGCGTGCTCGTTTGGTGAAGGCAAATCCAAAAACTGATTTCAATTGTTTG 929 Query 1179 AATGATTTTGGTTCATTCTTTAGACAAGACATTCCAATACCCGCGGGAACAATAATAGAC 1238 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 930 AATGATTTTGGTTCATTCTTCAGACAAGACATTCCAATACCCGCTGGAACAATAATAGAC 989 Query 1239 TTTCGGCGAACAGAAGATGGACAGCTAATCACAGAGATTGGTGGTAACCTGATTGGAGCT 1298 ||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| Sbjct 990 TTTCGACGAACAGAAGATGGACAACTAATCACAGAGATTGGCGGTAACCTGATTGGCGCT 1049 Query 1299 GTCCGAAGCAAGGATCTTTGCAGAGCATTTTTTGGTATGTACATTGGAGATGTTCCGGTG 1358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1050 GTCCGAAGCAAGGATCTTTGCAGAGCATTTTTTGGTATGTACATTGGAGATGTTCCGGTG 1109 Query 1359 TCAGAGCAGACAAAGGAGGAGATTGGTAGAAAAGTGGTGGGAATCATAAAGAGATGCTGA 1418 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1110 TCAGAGCAGACAAAGGAGGAGATTGGTAGGAAAGTGGTGGGAATCATAAAGAGATGCTGA 1169 Query 1419 AATCAATTACTTGTTAGATTTCCAATTGCCTCTGAGTTTTAGAAGAAGGCAATTGGGTTA 1478 |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 1170 AATCAATTACTTGTTAGACGTCCAATGGCCTCTGAGTTTTAGAAGAAGGCAATTGGGTTA 1229 Query 1479 GATTTACGCGGTCATGTCTAGATATTGTCAA-TCAAAATACTTTGTAAGCAGCTT 1532 ||||||||| ||||||||||| | |||| || ||||| ||||||| ||||||||| Sbjct 1230 GATTTACGCAGTCATGTCTAGCTGTTGTTAAATCAAATTACTTTGAAAGCAGCTT 1284 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61934738370 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5