BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G26320.1

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg320424 jgi|Araly1|320424|fgenesh1_pm.C_scaffold_4000481           278    2e-74
  Ahg891115 jgi|Araly1|891115|Al_scaffold_0007_3101                    252    1e-66


> Ahg320424 jgi|Araly1|320424|fgenesh1_pm.C_scaffold_4000481
Length=282

 Score =  278 bits (150),  Expect = 2e-74
 Identities = 242/286 (85%), Gaps = 8/286 (3%)
 Strand=Plus/Plus

Query  49   atggggaggaa-aaaactaaaatTGAAGAGAATAGAGTCCCTAAAAGAGAGAAGTAGCAA  107
            ||||||||||| |||| ||||| | || ||||||||   |||||||||||||||||||||
Sbjct  1    ATGGGGAGGAAGAAAA-TAAAACTAAATAGAATAGAAAGCCTAAAAGAGAGAAGTAGCAA  59

Query  108  ATTTTCAAAACGTAAAAAAGGTCTTTTTAAAAAGGCAGAAGAAGTAGCATTGTTATGCGA  167
            ||  |||||||||||| |||| ||||| || |||||||||||||||||| ||||||||||
Sbjct  60   ATACTCAAAACGTAAACAAGGGCTTTTCAAGAAGGCAGAAGAAGTAGCACTGTTATGCGA  119

Query  168  CTCG-GATATAATGTTAATTGTTGTTTCTCCCACCGAGAAGCCTACAGTTTTTAACACTC  226
             | | || || || || |||||||||||||| || || ||||||||  ||||  |||| |
Sbjct  120  -TTGTGAAATCATTTTGATTGTTGTTTCTCCGACGGATAAGCCTACCCTTTTCCACACCC  178

Query  227  GTTCT-AGATCATTCCATACAATCCT-TGAGAGGTTTTGCATGCTTTCATTACAAGAACG  284
            ||||| || || ||  ||| ||| || ||| |||| ||||||||||||||||||||||||
Sbjct  179  GTTCTAAG-TCCTTTAATAAAAT-CTATGATAGGTATTGCATGCTTTCATTACAAGAACG  236

Query  285  GGAAGAGAGGTGTGATCTTTCATATTTTTATATAATTATTACATAA  330
            |||||| ||||||||||||||| |||| ||||| ||||||||||||
Sbjct  237  GGAAGAAAGGTGTGATCTTTCAGATTTGTATATTATTATTACATAA  282


> Ahg891115 jgi|Araly1|891115|Al_scaffold_0007_3101
Length=258

 Score =  252 bits (136),  Expect = 1e-66
 Identities = 222/262 (85%), Gaps = 12/262 (5%)
 Strand=Plus/Plus

Query  49   atggggaggaa-aaaactaaaatTGAAGAGAATAGAGTCCCTAAAAGAGAGAAGTAGCAA  107
            ||||| ||||| |||| ||||| |||| ||| ||||   ||| |||||||||||||||||
Sbjct  1    ATGGGAAGGAAGAAAA-TAAAACTGAATAGACTAGAAAGCCTGAAAGAGAGAAGTAGCAA  59

Query  108  ATTTTCAAAACGTAAAAAAGGTCTTTTTAAAAAGGCAGAAGAAGTAGCATTGTTATGCGA  167
            ||  ||||||||||||||||| ||||| || |||||||||||||||||| |||| |||||
Sbjct  60   ATACTCAAAACGTAAAAAAGGGCTTTTCAAGAAGGCAGAAGAAGTAGCAATGTTGTGCGA  119

Query  168  CTCG-GATATAATGTTAATTGTTGTTTCTCCCACCGAGAAGCCTA-CAGTTTTTAACACT  225
             | | || ||||| || |||||||||||||| ||||| ||||||| || ||||  |||||
Sbjct  120  -TTGTGAAATAATTTTGATTGTTGTTTCTCCGACCGACAAGCCTACCA-TTTTCCACACT  177

Query  226  CGTTCT-AGATCATTCCA-TACAATCCT-TGAGAGGTTTTGCATGCTTTCATTACAAGAA  282
            |||||| || || || || || |||  | |||||||| ||||||||||||||||||||||
Sbjct  178  CGTTCTAAG-TCCTT-CAGTAAAAT-TTATGAGAGGTATTGCATGCTTTCATTACAAGAA  234

Query  283  CGGGAAGAGAGGTGTGATCTTT  304
            |||||||| |||||||||||||
Sbjct  235  CGGGAAGAAAGGTGTGATCTTT  256



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11675610234


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5