BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26350.1
Length=1566
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481492 jgi|Araly1|481492|fgenesh2_kg.4__552__AT2G26350.1 2222 0.0
> Ahg481492 jgi|Araly1|481492|fgenesh2_kg.4__552__AT2G26350.1
Length=1555
Score = 2222 bits (1203), Expect = 0.0
Identities = 1469/1588 (93%), Gaps = 55/1588 (3%)
Strand=Plus/Plus
Query 1 ATTTATTTTTCCTTTGAATTaaaaaaaaaTATCAAAGGCCGAATAAAAAACATCATTCGG 60
||||||||||||||| |||| |||||||||||| ||||||||||||||||||||| |
Sbjct 1 ATTTATTTTTCCTTTAAATT--GGAAAAATATCAAAAGCCGAATAAAAAACATCATTC-G 57
Query 61 CAAGTTCATCGATCCACGaaaaaaaaGAAACGATGAGGCTTAATGGGGATTCGGGTCCGG 120
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 58 CAAGTTCATCGATCCACGAAAAAAAAG---CGATGAGGCTTAGTGGGGATTCGGGTCCGG 114
Query 121 GTCAGGATGAACCCGGTTCGAGCGGGTTTCACGGCGGAATCAGACGATTCCCGTTAGCAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 GTCAGGATGAACCCGGTTCGAGCGGGTTTCACGGCGGAATCAGACGATTCCCGTTAGCAG 174
Query 181 CTCAGCCGGAGATTATGAGAGCTGCTGAGAAAGACGATCAATACGCTTCTTTCATCCACG 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 175 CTCAGCCGGAGATTATGAGAGCTGCCGAGAAAGACGATCAATACGCTTCTTTCATCCACG 234
Query 241 AAGCTTGCCGCGATGCCTTCCGACACCTTTTCGGTACAAGAATCGCTCTTGCTTACCAGA 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 235 AAGCTTGCCGCGATGCCTTCCGACACCTTTTCGGTACAAGAATCGCTCTAGCTTACCAGA 294
Query 301 AGGAGATGAAGCTACTTGGACAGATGCTTTACTATGTTCTTACGACAGGTTCAGGGCAAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 295 AGGAGATGAAGCTACTTGGACAGATGCTTTACTATGTTCTTACGACAGGTTCAGGACAAC 354
Query 361 AAACTTTAGGAGAGGAATATTGTGACATTATACAGGTTGCAGGGCCTTATGGACTCTCTC 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 355 AAACTTTAGGAGAGGAATATTGTGACATTATACAGGTTGCAGGACCTTATGGACTCTCTC 414
Query 421 CTACACCAGCTAGACGTGCTTTGTTCATATTGTACCAGACCGCAGTTCCATATATCGCAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 CTACACCAGCTAGACGTGCTTTGTTCATATTGTACCAGACCGCAGTTCCATATATCGCAG 474
Query 481 AGAGAATTAGCACTCGAGCTGCTACGCAAGCAGTCACCTTTGATGAGTCTGATGAG--TT 538
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 475 AGAGAATTAGCACTCGAGCTGCCACGCAAGCAGTCACCTTTGATGAGTCTGATGAGTTTT 534
Query 539 TT--T--T-G-G---T---GA----TAGTCATATCCACTCACCAAGAATGATAGATCTTC 582
|| | | | | | || |||||||||||||||||||||||||||||||||||
Sbjct 535 TTGGTCATAGTGCACTGGAGAGTGGTAGTCATATCCACTCACCAAGAATGATAGATCTTC 594
Query 583 CATCTTCATCTCAAGTTGAAACTTCAACTTCTGTAGTATCTAGGTTAAACGATAGACTTA 642
|||||||||||||| |||| |||||| | ||||||||| |||||||||| ||||||||||
Sbjct 595 CATCTTCATCTCAAATTGAGACTTCAGCGTCTGTAGTACCTAGGTTAAAAGATAGACTTA 654
Query 643 TGAGATCGTGGCACCGAGCTATTCAGCGATGGCCTGTGGTTCTTCCTGTTGCCCGCGAAG 702
||||| |||||||| |||||||||| || |||||||||||||||||||||| || ||||
Sbjct 655 AGAGATTGTGGCACCAAGCTATTCAGAGAAGGCCTGTGGTTCTTCCTGTTGCGCGTGAAG 714
Query 703 TCTTACAACTGGTTTTGCGTGCCAATCTGATGCTCTTCTACTTTGAAGGTTTTTATTATC 762
|||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 715 TCTTACAACTGGTTCTGCGTGCCAATTTGATGCTCTTCTACTTTGAAGGTTTGTATTATC 774
Query 763 ATATATCGAAACGTGCATCCGGGGTTCGTTATGTTTTCATAGGAAAGCAACTGAATCAGA 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 ATATATCGAAACGTGCATCCGGGGTTCGTTATGTTTTCATAGGAAAGCAACTGAATCAGA 834
Query 823 GACCTAGATACCAAATTCTTGGGGTTTTCCTTCTAATCCAATTGTGCATCCTTGCTGCTG 882
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 835 GACCTAGATACCAAATTCTTGGGGTTTTCCTTCTAGTCCAATTGTGCATCCTTGCTGCTG 894
Query 883 AGGGCTTGCGTCGGAGTAATTTGTCATCTATCACTAGCTCCATTCAGCAGGCTTCTATAG 942
|||||||||||||||||||||||||||||||||| || || ||||||||||| |||||||
Sbjct 895 AGGGCTTGCGTCGGAGTAATTTGTCATCTATCACAAGTTCAATTCAGCAGGCGTCTATAG 954
Query 943 GATCTTATCAAACTTCAGGAGGGAGAGGTTTACCTGTTTTAAATGAAGAGGGGAATTTGA 1002
|||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||
Sbjct 955 GATCTTATCAAACTTCAGGAGGGAGAGGATTACCTGTTTTAAACGAAGAGGGAAATTTGA 1014
Query 1003 TAACTTCGGAAGCTGAAAAGGGAAACTGGTCTACCTCCGATTCAACTTCAAC---GGAGG 1059
||||||| |||||||| |||||||||||||| || ||||||||| ||||||| |||||
Sbjct 1015 TAACTTCAGAAGCTGAGAAGGGAAACTGGTCCACGTCCGATTCATCTTCAACTTTGGAGG 1074
Query 1060 CAGTAGGGAAATGCACTCTCTGCTTAAGCACCCGTCAGCACCCAACGGCCACTCCTTGTG 1119
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1075 CTGTAGGGAAATGCACTCTCTGCTTAAGCACTCGTCAGCACCCAACGGCCACTCCTTGTG 1134
Query 1120 GTCATGTGTTTTGTTGGAGCTGCATTATGGAATGGTGCAACGAGAAGCAAGAATGCCCTC 1179
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1135 GTCATGTGTTTTGTTGGAACTGCATTATGGAATGGTGCAACGAGAAGCAAGAATGTCCTC 1194
Query 1180 TTTGTCGAACGCCCAATACCCATTCAAGTTTGGTTTGTTTGTATCATTCTGATTTTTAGG 1239
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1195 TTTGTCGAACACCCAATACCCATTCAAGTTTGGTTTGTTTGTATCATTCTGATTTTTAAG 1254
Query 1240 CACAATGGGATCAACAAAGACAGGCACTGCAGAAAGGCAAAGCAGCTAAGACAGTGACAC 1299
||| | || | |||||||||||||||| ||||||||||||| |||||||
Sbjct 1255 CAC--T---AT-------G---GGCACTGCAGAAAGGCGAAGCAGCTAAGACGGTGACAC 1299
Query 1300 CTAAGGACAGTGCATCTGCTACAGGAATGGAATCTGCTTCGGCTTCAGACTTTTTGAGTA 1359
|| |||||||||||||| |||| |||||||||||| || ||||||||||||||||||||
Sbjct 1300 CTTCGGACAGTGCATCTGGTACAAGAATGGAATCTGTTTTGGCTTCAGACTTTTTGAGTA 1359
Query 1360 AGATCAACAAGTTATGAGA-GAAGACAGAATAAATATATTTCTGACATCATTCTCGATCC 1418
|||||| |||||||||||| || ||||||||| | |||||| ||| |||||||||||||
Sbjct 1360 AGATCATCAAGTTATGAGAAGAC-ACAGAATAA-TGTATTTCAGACTTCATTCTCGATCC 1417
Query 1419 CATGCCTACCTTTTTCTCTATGATATTTAGTGCAGAAACCACAGAGGTTTGTTGTTTTAC 1478
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1418 CATGCCTACCTTTTTCTCTATGATATTTAGTACAGAAACCACAGAGGTTTGGAGTTTTAC 1477
Query 1479 ATTTCATTAAAAAGAGTTGGAGATGTTAGGTGGTCTTTCACATTCTATATTACATATAAT 1538
|||||||||||||||||||||||||||||||||| ||||||||| || | | ||| | |
Sbjct 1478 ATTTCATTAAAAAGAGTTGGAGATGTTAGGTGGTTTTTCACATT-TA-A--A-ATA-A-T 1530
Query 1539 AATCTCAATTGGAGATCTATTACAAGAC 1566
|||| |||||||||||||||| |||
Sbjct 1531 ---CTCACTTGGAGATCTATTACATGAC 1555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58658977300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5