BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26360.1
Length=1304
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320428 jgi|Araly1|320428|fgenesh1_pm.C_scaffold_4000485 1838 0.0
> Ahg320428 jgi|Araly1|320428|fgenesh1_pm.C_scaffold_4000485
Length=1167
Score = 1838 bits (995), Expect = 0.0
Identities = 1115/1173 (95%), Gaps = 8/1173 (1%)
Strand=Plus/Plus
Query 47 ATGACGGATGAAGAACAGAGTTAGTTTTCAAGGTTTATCCACAGATCCACTGAAATCAAC 106
|||| | |||| ||||||| ||| ||||||| |||| |||||||||||||||||||||||
Sbjct 1 ATGAAGAATGAGGAACAGA-TTACTTTTCAACGTTTGTCCACAGATCCACTGAAATCAAC 59
Query 107 AATGGTGAATAAAGCTCCGAAGAGGAAACATGTATCACCTGAATCTCTCCTTCTCTCTAT 166
||||||||||||||||| ||||| |||||||||||| ||||||||||| |||||||||||
Sbjct 60 AATGGTGAATAAAGCTCGGAAGAAGAAACATGTATCGCCTGAATCTCTACTTCTCTCTAT 119
Query 167 TCTCAATGATTTGTTGTTTCTAAATTCTCAAAAGCTTGACTCTTGTTTCCGTAGAAA-AT 225
||||||||| | |||||||||||||||||||||||||| |||||||| || | ||| |
Sbjct 120 TCTCAATGA--T-TTGTTTCTAAATTCTCAAAAGCTTGAGTCTTGTTTTCGCA-AAACAA 175
Query 226 CGAATTCAGATGCGTGTAGCTTTATAGTTAGCTTAAATTTTGCAAAAGTTGGAAATTTTA 285
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 176 CGAATTCAGATGCGCGTAGCTTTATAGGTAGCTTAAATTTTGCAAAAGTTGGAAACTTTA 235
Query 286 CTTCAAGATCCAATGAAATTGCTCCATTGATCAATGAAGCTGTTGCTAAAGGCAAGAACT 345
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 236 CTTCAAGATCCAATGAAACAGCTCCATTGATCAGTGAAGCTGTTGCTAAAGGCAATAACT 295
Query 346 TTGATACTGGGACAAGAGTTGGATTAGATGTTGGTCATCTTCTTAAATCTGCATTAGCTG 405
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 296 TTGATACTGGGACAAGAGTTGGATTAGATGTTGGCCATCTTCTTAAATCTGCATTAGCTG 355
Query 406 GAGGAATCTCATGTGCTTTCTCTGCTTTTTTGATGCATCCAGTGGATACTGTCAAGACAC 465
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GAGGAATTTCATGTGCTTTCTCTGCTTTTTTGATGCATCCAGTGGATACTGTCAAGACAC 415
Query 466 AAGTTCAAGCATCAACTACATTGTCGTTTCTCGAAATATTGTCAAAGATTCCAGAGATTG 525
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 416 AAGTTCAAGCATCAACTACATTGTCGTTTCTTGAAATATTGTCAAAGATTCCAGAGATTG 475
Query 526 GTGCTCGAGGTTTATACAAAGGCTCGATTCCGGCTGTTGTTGGTCAATTTGCTAGTCATG 585
||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||
Sbjct 476 GTGCTCGAGGTTTATACAAAGGCTCGATTCCCGCTGTTGTTGGTCAATTTGCAAGCCATG 535
Query 586 GTTTACGAACAAGTATATATGAAGCAAGTAAACTT-GCGTTACCGCTCGTTGCTCCTACT 644
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 536 GTTTACGAACAAGTATATATGAAGCAAGTAAA-TTGGCATTACCGCTCGTTGCTCCTACT 594
Query 645 CTTCTTGATATTCAAGTTCAGTCAATCGCGTCTTTTATTGGTACGGTATTGGGGACAACG 704
|| ||||||||||||||||||||||||||||||||| ||||||| || |||||||||||
Sbjct 595 CTCCTTGATATTCAAGTTCAGTCAATCGCGTCTTTTCTTGGTACAGTTTTGGGGACAACA 654
Query 705 TTGCGAATACCGTGTGAAGTGTTGAAACAACGGTTACAAGCCAACCAGTTTGATAACATA 764
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TTGCGAATACCGTGTGAGGTGTTGAAACAACGGTTACAAGCCAACCAGTTTGATAACATA 714
Query 765 GTGGAAGCTACAGTTTCGACTTGGCATCAAGAAGGGCTCAAAGGACTCTTTCGTGGGACC 824
||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 715 GTGGAAGCTACGGTTTCGGTTTGGCATCAAGATGGGCTCAAAGGACTCTTTCGTGGGACC 774
Query 825 GGTGTTACCCTTCTACGTGAGGTTCCCTTCTACGTTGCTGGCATGGGACTTTACAACCAA 884
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 775 GGTGTTACCCTTCTACGCGAGGTTCCCTTCTACGTTGCAGGCATGGGACTTTACAACCAA 834
Query 885 TCAAAGAAGGTGGTGGAGAGACAATTAGGAAGAGAGTTGGAGCCGTGGGAAGCCATCGCG 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 TCAAAGAAGGTGGTGGAGAGACAATTAGGAAGAGAGTTGGAGCCGTGGGAAGCCATCGCG 894
Query 945 GTTGGAGCCTTGTCCGGTGGTTTCACTGCAGTTTTAACAACGCCATTCGATGTGATTAAA 1004
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 895 GTTGGAGCCTTGTCTGGTGGTTTCACTGCAGTCTTAACAACGCCATTCGATGTGATTAAA 954
Query 1005 ACAAGAATGATGACGGCTCCACAAGGCGTGGAATTGTCGATGTTGATGGCTGCTTATTCA 1064
|||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||
Sbjct 955 ACAAGAATGATGACGGCTCCACAAGGCGTGGAATTGTCAATGTGGATGGCTGCCTATTCA 1014
Query 1065 ATTCTCACACATGAGGGTCCTCTTGCTTTCTACAAAGGAGCTGTTCCAAGGTTTTTCTGG 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1015 ATTCTCACACATGAGGGTCCTCTTGCTTTCTACAAAGGAGCTGTTCCAAGGTTCTTCTGG 1074
Query 1125 ACTGCTCCTCTCGGAGCCTTGAACTTAGCTGGCTATGAACTTCTTCAAAAGGCTATGATC 1184
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1075 ACTGCTCCTCTCGGAGCCTTAAACTTAGCTGGCTATGAAATTCTTCAAAAGGCTATGATC 1134
Query 1185 ACACCTCTGAATCAATCAGTGCATAGTGAGTAA 1217
||||||||||||||||||| ||||| |||||||
Sbjct 1135 ACACCTCTGAATCAATCAGGGCATAATGAGTAA 1167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48759210843
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5