BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26380.1
Length=1443
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932896 jgi|Araly1|932896|scaffold_400884.1 1934 0.0
Ahg913177 jgi|Araly1|913177|Al_scaffold_0001_3431 521 4e-147
> Ahg932896 jgi|Araly1|932896|scaffold_400884.1
Length=1487
Score = 1934 bits (1047), Expect = 0.0
Identities = 1319/1451 (91%), Gaps = 16/1451 (1%)
Strand=Plus/Plus
Query 1 ATGAACTCTTGTTCTTTCCA-CAACTTCTTCATTTTCACCGCCGTGATCTTTCTCCGGTG 59
|||||||||| ||| ||||| || | ||||||| ||||||||||| |||||||||||||
Sbjct 22 ATGAACTCTTTTTCCTTCCACCATC-TCTTCATCTTCACCGCCGTAATCTTTCTCCGGTA 80
Query 60 TTTAAACCCCACCGCAGCAGCCACGTGTCAT-CCTGATGATGAGGCGGGTCTATTAGCTT 118
|||||| |||||| |||| |||| ||||||| || ||||||||||| ||||| ||||| |
Sbjct 81 TTTAAATCCCACCACAGCTGCCAGGTGTCATACC-GATGATGAGGCAGGTCTTTTAGCCT 139
Query 119 TTAAATCGGGTATAACCAAAGATCCTTCAGGTATTCTAAGCACTTGGAAAAAAGGTACTG 178
||||||| ||||||||| |||| ||||| |||||||||| || ||||| ||||||||||
Sbjct 140 TTAAATCAGGTATAACCCAAGACCCTTCGGGTATTCTAAAAACCTGGAAGAAAGGTACTG 199
Query 179 ATTGCTGCTCTTGGAACGGTGTCAGTTGCCCTAACGGCAACCGTGTCGTCGTACTCACTA 238
|||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 200 ATTGCTGCTCTTGGGATGGTGTCAGTTGCCCTAACGGCAACCGCGTCGTCGTACTCACTA 259
Query 239 TCCGCATAGAGTCCGACGATGCCGGAATCTTTCTCTCTGGCACAATCTCTCCGTCACTGG 298
|| ||||||||| || |||||| |||||||||||| ||||| ||||| |||||||| |
Sbjct 260 TCAACATAGAGTCTGATGATGCCAAAATCTTTCTCTCGGGCACTATCTCCCCGTCACTAG 319
Query 299 CCAAACTCCAGCATTTGGAAGGGGTCGTCTTTATCAATCTCAAAAACATCACAGGACCAT 358
| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||
Sbjct 320 CTAAACTCCAGCATTTGGAAGGGCTCGTCTTTATTAATCTCAAAAACATCACTGGACCAT 379
Query 359 TTCCAC-CATTT-TTATTCAGATTACCACATCTAAAGTATGTTTACCTCGAGAATACACG 416
|||| | ||||| || ||| ||||||||||||||||||| |||| |||||||||||||||
Sbjct 380 TTCC-CTCATTTCTT-TTCCGATTACCACATCTAAAGTACGTTTTCCTCGAGAATACACG 437
Query 417 TCTCTCTGGTCCTCTTCCAGCCAACATCGGCGCGCTTAACCGCTTAGATACATTAACCGT 476
|||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 438 TCTCTCTGGTCCTCTTCCGGCCAACATCGGCGCGCTAAACCGATTAGATACATTAACCGT 497
Query 477 TAAAGGAAACCGGTTCATCGGTTCAATCCCGAGTTCCATATCCAATTTAACTCGGTTAAA 536
||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||
Sbjct 498 TAAAGGAAACCGGTTCAGCGGTTCGATCCCGAGCTCCATATCCAATTTAACTCGGTTAAA 557
Query 537 CTACCTAAATCTTGGCGGTAATCTCTTAACCGGAACAATACCGTTAGGGATTGCTAATCT 596
|||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 558 CTACCTCAATCTCGGCGGTAATCTCTTAACCGGAACAATACCATTAGGGATTGCTAATCT 617
Query 597 CAAGCTCATTTCGAATCTTAATCTCGATGGAAACCGTCTCTCTGGAACCATCCCGGATAT 656
|||| | || || ||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 618 CAAGGTTATGTCTAATCTGAATCTCGACGGTAACCGTCTCTCTGGAACCATCCCGGATAT 677
Query 657 TTTCAAATCAATGACTAACCTTCGAATCCTCACTCTCTCACGCAACAGATTCTCCGGGAA 716
||||||||| ||| |||| || || |||||||||||||| |||||||||||||||||||
Sbjct 678 TTTCAAATCCATGCCTAAGCTCCGTATCCTCACTCTCTCTCGCAACAGATTCTCCGGGAC 737
Query 717 GCTCCCTCCGTCGATTGCATCGCTCGCGCCGGTTCTTGCGTTCCTTG-AGCTAGGTCAGA 775
||||||||||||||| || || ||||||||||| ||||||||| ||| ||||||||||||
Sbjct 738 GCTCCCTCCGTCGATAGCCTCACTCGCGCCGGTGCTTGCGTTC-TTGGAGCTAGGTCAGA 796
Query 776 ACAATCTCTCGGGGTCGATACCGAGCTATTTATCAAGATTCGTGGCGCTCGACACACTGG 835
||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 797 ACAATCTCTCGGGCTCGATACCGAGCTATTTATCAAGATTCATGAAGCTCGACACACTGG 856
Query 836 ATCTCTCCAAGAACC-GTTTCTCTGGAGCCGTGCCGAAGAGTTTGGCCAAGCTGACTAAA 894
||||||||||||||| ||| ||| |||| |||||| |||||||||||||||||||| |||
Sbjct 857 ATCTCTCCAAGAACCAGTT-CTCCGGAGTCGTGCCAAAGAGTTTGGCCAAGCTGACAAAA 915
Query 895 ATTGCTAATATCAATCTCTCTCACAATCTTCTAACCAATCCATTCCCTGTTTTGAA-CGT 953
|||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||
Sbjct 916 ATTGCTAATATCAATCTCTCTCACAATCTTCTAACCGATCCATTCCCTGTTTT-AATCGT 974
Query 954 GAAGAATTACATCTTGACTCTAGATCTGTCGTACAACAAGTTTCACATGGAAACAATCCC 1013
|||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 975 AAAGAATGACATCTTGACCCTAGATCTGTCGTACAACAAGTTTCACATGGAAACGATCCC 1034
Query 1014 GGAATGGGTGACCTCAGCGTCGATCCTCGGCTCTTTGAAGTTGGCTAAATGTGGAATCAA 1073
||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||
Sbjct 1035 GGAATGGGTGACCTCAGCGACGATCCTTTCCTCTTTGAAGCTGGCTAAATGTGGAATCAA 1094
Query 1074 GATGAGCTTAGACGATTGGAAAACAAGGCAAACTGATCTCTACGTTTCCATTGATCTTTC 1133
||||| |||||| ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1095 GATGAACTTAGATGATTGGAAAACAAGGCAAACTGATCTCTATGTTTCCATCGATCTTTC 1154
Query 1134 GGACAACGAGATCTCAGGGAGTCCACTGAGGTTCTTGAAGGGAGCA-GAGCAACTACGGG 1192
||||||||||||||||||||||| ||||||||||||||| | || | | | |||||||
Sbjct 1155 AGACAACGAGATCTCAGGGAGTCCGGTGAGGTTCTTGAAGGAA-CAAGGGTACCTACGGG 1213
Query 1193 AGTTTCGAATGTCGGGGAACAAACTCCGATTCGATTTGAGGAAGCTAAGTTTCTCGACGA 1252
|||||| ||||||||||||||||||||||||||||||| ||||||| ||||| |||| |
Sbjct 1214 AGTTTCTAATGTCGGGGAACAAACTCCGATTCGATTTGGGGAAGCTGAGTTTTTCGAATA 1273
Query 1253 CGCTCGAGACGCTTGATCTATCAAGGAACTTAGTGTTCGGGAAAGTGCCGGCGAGGGTGG 1312
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1274 CGCTCGAGACGCTTGATCTGTCAAGGAACTTAGTGTTCGGGAAAGTGCCGGCGAGGTTGG 1333
Query 1313 CCGGATTAAAGACACTTAACTTGAGTCAAAACCATCTTTGTGGGAAACTTCCGGTGACAA 1372
|| |||| |||||||| ||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1334 CCAGATTGAAGACACTAAACTTGAGTCAAAACCATCTTTGTGGGAAACTTCCGGCGACCA 1393
Query 1373 AGTTTCCAGAAAGTGTGTTTGCCGGCAACGACTGTCTATGCGGCTCCCCGCTAAGTCATT 1432
||||||||||||||||||||||||| ||||||||||| |||||||| || || ||||||
Sbjct 1394 AGTTTCCAGAAAGTGTGTTTGCCGGGAACGACTGTCTCTGCGGCTCTCCACTTGGTCATT 1453
Query 1433 GTAAAGGTTAA 1443
|||||||||||
Sbjct 1454 GTAAAGGTTAA 1464
> Ahg913177 jgi|Araly1|913177|Al_scaffold_0001_3431
Length=2796
Score = 521 bits (282), Expect = 4e-147
Identities = 1036/1385 (75%), Gaps = 111/1385 (8%)
Strand=Plus/Plus
Query 46 ATCTTTCTCCGGTGTTTAAACCCCACCGCAGC-AGCCACGTGTCATCCTGATGATGAGGC 104
|||||||| | || ||||| | || | ||| | |||||||||||||||||||||||||
Sbjct 43 ATCTTTCTTCAGTCTTTAAGTTCAACGGGAGCTA-CCACGTGTCATCCTGATGATGAGGC 101
Query 105 GGGTCTATTAGCTTTTAAATCGGGTATAAC-CAAAGATCCTTCAGGTATTCTAAGCACTT 163
|||||| |||| || |||||||||||||| ||| |||||||| || ||||| ||| |||
Sbjct 102 GGGTCTTTTAGAATTCAAATCGGGTATAACTCAA-GATCCTTCCGGCATTCTCAGCTCTT 160
Query 164 GGA--AAAAAGGTACTGATTGCTGCTCTTGGAACGGTGTCAGTTGCC-CTAACGGCAACC 220
||| ||||| |||| ||||||||| ||||| ||| ||| ||||| | ||| || |||
Sbjct 161 GGACGAAAAA--TACTTCTTGCTGCTCGTGGAAAGGTATCACTTGCCTC-AACAGCGACC 217
Query 221 GTGTCGTCGTAC-TC-AC-TA-TCCGCATAGAGTCCGACGATGCCGGAAT-CTTTCTCTC 275
||||| | || || || || | | || | | | ||| || || || ||
Sbjct 218 GTGTCACCA-ACCTCGACCTAGTGGG-ATTTT-TAAAAAAAC-CCG-AACGCTCCCTTTC 272
Query 276 TGGCACAATCTCTCCGTCACTGGCCAAACTCCAGCATTTGGAAGG-GGTC-GTCTTTATC 333
|| || |||| ||||| ||||||||||| ||||| | || | ||| | ||| |
Sbjct 273 CGGTACTCTCTCACCGTCGCTGGCCAAACTTCAGCACCTC-AACGTGGTTAG-CTT-AGG 329
Query 334 A-ATC-TCAAAAACATCACAGGACCATTTCCACCATTT--TTATTCAGATTACCACATCT 389
| ||| | || |||||| ||| | |||||| | || || | || ||||||| | ||
Sbjct 330 AGATCATGGGAA-CATCACTGGATCTTTTCCAA-AGTTCCTTCT-CAAATTACCAAAGCT 386
Query 390 AAAGTATGTTTACCTCGAGAATACAC-GTCTCTCTGGTCCTCTTCCAGCCAACATCGGCG 448
|| ||| ||| || || |||||| || ||||||| ||||| |||||| | ||||||||||
Sbjct 387 AAGGTACGTTGACATCCAGAATA-ACCGTCTCTCCGGTCCCCTTCCAACAAACATCGGCG 445
Query 449 CGCTTAAC-CGCTTAGATACA-TTAAC-CGTTAAAGGAAACCGGTTCATCGGTTCAATCC 505
||| ||| || ||||| ||| || | || | ||||| ||||| |||| | ||||
Sbjct 446 TGCTAAACACG-TTAGA-ACAATTCTTTC-TTCAGGGAAATAAGTTCACCGGTCCGATCC 502
Query 506 CGAGTTCCATATCCAATTTAACTCGGTTAAACT-ACCTAAATCTT-GGCGGTAATCTCTT 563
||||||| || ||||||||||| |||||| || | || | | || || |||||||||||
Sbjct 503 CGAGTTCGATTTCCAATTTAACCCGGTTAT-CTTATCTCATT-TTCGGAGGTAATCTCTT 560
Query 564 AACCGGAACAATACCGTTAGGGA-TTGCTAATCTCAAGCTCATTTC-GAATCTTA-ATCT 620
||||||||| |||||| |||| | ||||||| ||||||||||| | | |||| | ||
Sbjct 561 AACCGGAACTATACCGGTAGG-ACTTGCTAACCTCAAGCTCATG-CAGCATCTGGCA-CT 617
Query 621 CGATGGA-AACCGTCTCTCTGGAACCATCCCGGATATTTTCAAATCAATGAC-TAACCTT 678
|| | | ||||| ||||| || ||| |||| || |||||| |||||||||| | | |
Sbjct 618 CGGCG-ACAACCGCCTCTCAGGCACCGTCCCAGAAATTTTCGAATCAATGACGTTGC-T- 674
Query 679 CGAATC-CTC-ACTCTCTCACGCAACAGATTCTCCGGGA-AGCTCCCTCCGTCGATTGCA 735
| ||| || | |||||| ||||| ||||||| |||| | || |||| ||| |||||
Sbjct 675 CAAATTTCTAGA-TCTCTCCCGCAATGGATTCTCTGGGAGA-CTTCCTCTGTCCATTGCG 732
Query 736 TCGCTCGCGCCGGTTCTTGCGTT-CCTTGA-GCT-AGGTCAGAACAATCTCTCGGGGTCG 792
|| ||||| ||| || | | || | | ||| || |||||||||||||||||| ||
Sbjct 733 TCACTCGCACCGACACTC-C-TAGCCCTCAAGCTGAGC-CAGAACAATCTCTCGGGGGCG 789
Query 793 ATACCG-AGCTATTTATCAAGATTCGTG-GCGCTCGACACACT-GGATCTCTCCAAGAAC 849
|| ||| | |||| ||||||||||| | |||||| | | | ||||||||||||||||
Sbjct 790 ATCCCGGA-CTATATATCAAGATTCAACAG-GCTCGAAA-AGTTGGATCTCTCCAAGAAC 846
Query 850 CGTTTCTCTGGAGCCGTGCCGAAGAGTTTGGCCAAGCTGACTAAAATTG-CTAATATCAA 908
|| ||||| || | || |||||| |||| | ||| |||| || ||| | ||| | |
Sbjct 847 CGGTTCTCAGGTGTTGTACCGAAGGGTTTCGTCAATATGACCAATATTAAC-AATCTTGA 905
Query 909 TCTCTCTCACAATCTTCTAACCAATCCATTCCCTGTTTTGAACGTGAAGAATTACATCTT 968
|||||| |||||||||||||| |||| |||||||| |||||||| || | ||||
Sbjct 906 TCTCTCCCACAATCTTCTAACTAATCAATTCCCTGAATTGAACGTTAACAC---CATC-- 960
Query 969 GACT--CTAGATCTGTCGTACAAC-AAGTTTCA-CATGGAAACAATCCCGGAATGGGTGA 1024
|| | || ||||| ||||||||| || ||||| | ||||||| || || |||||||||
Sbjct 961 GAATATCTTGATCTCTCGTACAACCAA-TTTCAGC-TGGAAACGATTCCACAATGGGTGA 1018
Query 1025 CCTCAGC-GTCGA-TCCTCGGCTCT-TTGAAGTTGGCTAAATGTGGAATCAAGATGAGCT 1081
| || | | ||| || || || | |||||| | || |||||||| |||||||||||||
Sbjct 1019 CATC-GTTGCCGAGTC-TCTTCT-TGTTGAAGCTAGCAAAATGTGGGATCAAGATGAGCT 1075
Query 1082 TAGACGATTGGAAAACAA-GGCAAAC-T-GATCTCTACGTTTCCATTGATCTTTCGGACA 1138
||||||||||||| || || || | | | | |||| || ||| ||||| ||| | |
Sbjct 1076 TAGACGATTGGAAGCCAGCGG-AACCCTTG-TA-CTACCATTACATCGATCTGTCGAAAA 1132
Query 1139 ACGAGATCTCAGGGAGTCCACTGAGGTTCTTGAAGG-GAGCA-GAGCAACTACGGGAGTT 1196
|||||||||||||||||| | ||||||||||| || || | | | || | ||||||
Sbjct 1133 ACGAGATCTCAGGGAGTCTAGAAAGGTTCTTGAACCAGA-CATG-GTATCTGCTGGAGTT 1190
Query 1197 TCGAATGTCGGGGAACAAACTCCGATTCGATTTGAGGAAGCT--AAGTTTCTCGACGACG 1254
||| | ||||||||||||||| ||||||| || |||| || |||||| | | ||||
Sbjct 1191 TCGGGCGGCGGGGAACAAACTCCAATTCGATATGGGGAA-CTTGAAGTTTG-CAAGGACG 1248
Query 1255 CTCGAGACGCTTGATCTATCAAGGAACTTAGTGTTCGGGAAAGTGCCGGCGAGGGTGGCC 1314
|| | || || ||||| ||||||||||| || ||||||| |||||||||| ||| ||
Sbjct 1249 CTAAAAACCCTGGATCTTTCAAGGAACTTGGTATTCGGGATGGTGCCGGCGATGGTAGCT 1308
Query 1315 GGAT-TAAAGACACTTAACTTGAGTCAAAACCATCTTTGTGGGAAA-CTTCCGG-TGACA 1371
|| | | ||| ||| ||||||||||||||||||||||| || ||| ||||| | | |||
Sbjct 1309 GG-TCTGCAGAAACTGAACTTGAGTCAAAACCATCTTTGCGG-AAAGCTTCCAGCT-ACA 1365
Query 1372 AAGTT 1376
|||||
Sbjct 1366 AAGTT 1370
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53973877165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5