BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26390.1
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481380 jgi|Araly1|481380|fgenesh2_kg.4__440__AT2G25240.1 1144 0.0
Ahg937184 jgi|Araly1|937184|scaffold_501375.1 848 0.0
Ahg900194 jgi|Araly1|900194|Al_scaffold_0004_844 488 4e-137
> Ahg481380 jgi|Araly1|481380|fgenesh2_kg.4__440__AT2G25240.1
Length=1261
Score = 1144 bits (619), Expect = 0.0
Identities = 994/1175 (85%), Gaps = 26/1175 (2%)
Strand=Plus/Plus
Query 1 ATGGAGTTAGGAAAATCAATTGAGAACCAAAACAACGTCGTGGCAAGACTAGCAAAGAAA 60
|||||||| |||||||||||||||||||||||| |||| |||| ||||||| ||||| |
Sbjct 1 ATGGAGTTGGGAAAATCAATTGAGAACCAAAACGACGTGGTGGTAAGACTAACAAAGCAT 60
Query 61 GTCAT-TGAAACAGATGTCGCCAATGGCTCCAATGTTGTCTTTTCACCGATGTCAATCAA 119
||||| | || || | |||||||| ||||| ||||||| ||||| | |||||||||
Sbjct 61 GTCATCT-CTAC-CAT-T-GCCAATGGTTCCAACCTTGTCTTCTCACCAACGTCAATCAA 116
Query 120 CGTTTTGCTCAGCCTCATCGCCGCTGGTTCTAA-TCCCGTCACCAAAGAAGAAATCCTCT 178
||||||||||||||||||||| || ||||| || | || ||||| ||| |||||||||
Sbjct 117 CGTTTTGCTCAGCCTCATCGCGGCCGGTTC-AAGTTGTGTGACCAATGAAAAAATCCTCT 175
Query 179 CATTCCTCATGTCACCGTCTACGGATCACCTTAACGCGGTCTTGGCCAAGATCGCGGACG 238
|||||||||||| |||||| ||||||||||| ||| ||||||||||| ||| ||||
Sbjct 176 CATTCCTCATGTTACCGTCAACGGATCACCTCAACATAGTCTTGGCCAAAATCATAGACG 235
Query 239 GCGGCACCGAGAGAAGTGATTTGTGCTTATCTACGGCTC-ACGGTGTCTGGATCGACAAG 297
||| ||| |||| |||||||||| |||| |||| || | | ||||| ||||||||||||
Sbjct 236 GCGACACGGAGACAAGTGATTTGCGCTTGTCTATAGC-CAATGGTGTTTGGATCGACAAG 294
Query 298 -TCTTCTTATTTGAAGCCTTCCTTTAAAGAGCTTTTGGAGAATTCCTACAAGGCTTCTTG 356
| ||| | ||||||||||||||||||| ||||||||||||||| ||||||||| ||||
Sbjct 295 TTTTTC-TCCTTGAAGCCTTCCTTTAAAGCGCTTTTGGAGAATTCTTACAAGGCTACTTG 353
Query 357 TAGTCAAGTTGACTTCGCAACCAAGCCTGT-TGAAGTGATTGATGAGGTAAATATATGGG 415
|| ||||||||||||||||||||||||| | |||||||||||||||||| |||| |||||
Sbjct 354 TAATCAAGTTGACTTCGCAACCAAGCCT-TCTGAAGTGATTGATGAGGTGAATACATGGG 412
Query 416 CTGACGTCCACACAAATGGACTCATCAAGCAGATTCTTTCACGCGATTGTACCGATACTA 475
||| ||||| || ||||||||||||||| |||||||||||||||||| || ||||||
Sbjct 413 TTGAAGTCCAAACTAATGGACTCATCAAGGAGATTCTTTCACGCGATTCTATCGATAC-- 470
Query 476 TCAAGGAGATCCGTAATAGCACACTTATTCTAGCAAATGCAGTGTACTTCAAAGCAGCAT 535
| ||||||| |||||||| |||| ||||||||||| |||||||||| |||||
Sbjct 471 T-------ATCCGTAGCAGCACACTCGTTCTTGCAAATGCAGTCTACTTCAAAGGAGCAT 523
Query 536 GGAGTAGAAAATTTGATGCAAAACTAACAAAAGATAACGATTTTCATCTTCTTGACGGTA 595
|||| || |||||||||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 524 GGAGCAGTAAATTTGATGCAAACCTGACAAAAGATAACGATTTTCATCTGCTTGACGGTA 583
Query 596 ACACGGTAAAAGTCCCCTTCATGATGAGTTATAAGGACCAATATCTAAGAGGCTATGATG 655
| |||| |||||||||||||||| | ||| ||||||| || |||||| |||||||||
Sbjct 584 CCTCGGTGAAAGTCCCCTTCATGACCAATTACGAGGACCAGTACCTAAGAAGCTATGATG 643
Query 656 GTTTCCAAGTTTTGCGCCTACCTTATGTAGAGGATAAACGTCATTTCTCCATGTACATTT 715
||||| ||||||||||||| |||||| |||||||| |||||| ||||| ||||||||||
Sbjct 644 GTTTCAAAGTTTTGCGCCTCCCTTATATAGAGGATCTACGTCAATTCTCTATGTACATTT 703
Query 716 ATCTTCCTAATGACAAAGACGGACTAGCTGCTCTGCTTGAGAAAATAAGCACTGAACCAG 775
|||||||||| || ||||||||| |||||||||||||||||| ||| || | |||||||
Sbjct 704 ATCTTCCTAACGATAAAGACGGATTAGCTGCTCTGCTTGAGATGATAGGCTCCGAACCAG 763
Query 776 GATTTCTTGATAGCCATATTCCACTTCACCGTACACCAGTCGATGCTTTGAGAATTCCGA 835
|||| | |||| ||||||||| || ||||||| | |||| | |||||| | || || |
Sbjct 764 AATTTATCGATAACCATATTCCGCTCCACCGTATATCAGTTGGTGCTTTCCGGATCCCAA 823
Query 836 AGTTGAACTTCTCTTTTGAGTTTAAAGCTTCAGAAGTTTTGAAAGACATGGGGCTTACTT 895
|||| || |||||||| |||||||| |||||||||||| ||||||| |||||||| ||||
Sbjct 824 AGTTTAAATTCTCTTTCGAGTTTAATGCTTCAGAAGTTCTGAAAGATATGGGGCTGACTT 883
Query 896 CTCCATTTACTTCCAAAGGTAATTTAACTGAGATGGTTGATTCGCCTTCGAACGGT-GAT 954
| ||||||| | |||| ||||||||||||||||||||| ||||| |||||| ||
Sbjct 884 CACCATTTAATAATGGAGGTGGTTTAACTGAGATGGTTGATTCACCTTCCAACGGTGGA- 942
Query 955 AAACTGCACGTCTCAAGCATTATTCATAAAGCTTGCATTGAGGTGGATGAAGAGGGAACC 1014
| || |||||||||||||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct 943 GATCTATACGTCTCAAGCATTCTTCATAAAGCTTGTATTGAAGTGGATGAAGAGGGAACC 1002
Query 1015 GAAGCTGCAGCGGTCTCTGTTGCCATCATGATGCCCCAATG-TTTGATGCGGAACCCGGA 1073
||||||||||| ||||| |||| | |||| ||| | | | ||||| |||||| |||||
Sbjct 1003 GAAGCTGCAGCCGTCTCCGTTGGCGTCATAATGTGC-ACTTCTTTGAGGCGGAATCCGGA 1061
Query 1074 TTTTGTAGCTGACCATCCATTTCTGTTCACTGTGAGAGAAGACAATAGTGGAGTAATTTT 1133
||| |||||||||| |||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 1062 TTTCGTAGCTGACCGTCCATTTCTGTTCACTGTCAGAGAAGACAAGAGTGGAGTGATTTT 1121
Query 1134 GTTCATTGGTCAAGTTCTTGATCCTTCTAAACATT 1168
|||||| |||||||||||||||||||| |||||||
Sbjct 1122 GTTCATGGGTCAAGTTCTTGATCCTTCAAAACATT 1156
> Ahg937184 jgi|Araly1|937184|scaffold_501375.1
Length=1225
Score = 848 bits (459), Expect = 0.0
Identities = 977/1216 (80%), Gaps = 80/1216 (7%)
Strand=Plus/Plus
Query 1 ATGGAGTTAGGAAAATCAATTGAGAACCAAAACAACGTCGTGGCAAGACTAGCAAAGAAA 60
|||||||| |||||||||| ||||| |||||| ||||| ||| | |||||||||| |
Sbjct 21 ATGGAGTTGGGAAAATCAACGGAGAATCAAAACGACGTCATGGTATTACTAGCAAAGCAT 80
Query 61 GTCATTGAAACAGATGTCGCCAATGGCTCCAATGTTGTCTTTTCACCGATGTCAATCAAC 120
||||| | || | | | ||||| |||||||| | ||||| ||||| ||||||||||||
Sbjct 81 GTCATCGCTACCG-T-T-GCCAACGGCTCCAACCTCGTCTTCTCACCAATGTCAATCAAC 137
Query 121 GTTTTGCTCAGCCTCATCGCCGCTGGTTCTAATC-CCGTCACCAAAGAAGAAATCCTCTC 179
|||||||| |||| || ||||||||||| || | ||||||||||||| ||||||| ||
Sbjct 138 ATTTTGCTCTGCCTGATTGCCGCTGGTTCCAA-CTGCGTCACCAAAGAACAAATCCTATC 196
Query 180 ATTCCTCATGTCACCGTCTA-CGGATCACCTTAACGCGGTCTTGGCCAAGATCG---C-G 234
|||||||| || ||| || | |||||||||| ||||||||||||||||||| || | |
Sbjct 197 ATTCCTCACGTTACCCTC-ATCGGATCACCTCAACGCGGTCTTGGCCAAGACCGTATCTG 255
Query 235 --GAC--GGC-G--GCA-CCGAGAGAAGTGATTTGTGCTTATCTACGGCTCACGGTGTCT 286
| | || | | | ||||||| ||| ||| ||||||||||||| | ||||| |
Sbjct 256 TTGCCTTCGCTGATGGATTGGAGAGAAATGACTTGCACTTATCTACGGCTTATGGTGTAT 315
Query 287 GGATCGACAAGTCTTCTTAT--TTGAAGCCTTCCTTTAAAGAGCTTTTGGAGAATTCCTA 344
|||| ||||| || | |||| || ||||||||||||||||| ||||||||||| |||||
Sbjct 316 GGATTGACAAATC-T-TTATCCTTCAAGCCTTCCTTTAAAGATCTTTTGGAGAACTCCTA 373
Query 345 CAAGGCTTCTTGTAGTCAAGTTGACTTCGCAACCAAGCCTGTTGAAGTGATTGATGAGGT 404
|| ||| |||||||||||| ||||||||||||||| |||| |||||||||| |||| ||
Sbjct 374 TAACGCTACTTGTAGTCAAGCTGACTTCGCAACCAAACCTGCTGAAGTGATTAATGAAGT 433
Query 405 AAATATATGGGCTGACGTCCACACAAATGGACTCATC-AAGCAGATTCTTTCACGCGATT 463
|||| ||||||||| | |||||| |||||||||||| ||| ||||||||||| |
Sbjct 434 GAATACATGGGCTGAAGCCCACACCAATGGACTCATCAAAG-AGATTCTTTCA--C---- 486
Query 464 GTACCGATACTATCAAGGA-GATCCGT-AATAGCACACT--TATTCTAGCAAATGCAGTG 519
| |||| ||||||| || |||||| || || || || |||| | ||||||||||||
Sbjct 487 --A-CGATTCTATCAA-GACTATCCGTGAA-AGTACGCTAGTATT-T-GCAAATGCAGTG 539
Query 520 TACTTCAAAGCAGCATGGAGTAGAAAATTTGATGCAAAACTAACAAAAGATAACGATTTT 579
|||||||||| ||| ||||| | ||||||||||||||| |||||||| ||||||||||
Sbjct 540 TACTTCAAAGGAGCTTGGAGCAAAAAATTTGATGCAAAGTTAACAAAAAATAACGATTTC 599
Query 580 CATCTTCTTGACGGTAACACGGTAAAAGTCCCCTTCATGATGAGTTATAAGGACCAATAT 639
|||||||||||||| | |||||| |||||||||||||||| | ||| ||| | |||||
Sbjct 600 CATCTTCTTGACGGCACCACGGTGAAAGTCCCCTTCATGACCAATTACAAGAAGCAATAC 659
Query 640 CTAAG-AGGCTATGATGGTTTCCAAGTTTTGCGCCTACCTTATGTAGAGGATAAACGTCA 698
|| || | |||||||||| | ||||||||||||| ||||||||||||||| |||||||
Sbjct 660 CT-AGAATATTATGATGGTTACAAAGTTTTGCGCCTTCCTTATGTAGAGGATCAACGTCA 718
Query 699 TTTCTCCATGTACATTTATCTTCCTAATGACAAAGACGGACTAGCTGCTCTGCTTGA-GA 757
||| ||||||||||||||||||||||||||||||| ||| || || |||||||||| ||
Sbjct 719 ATTCGCCATGTACATTTATCTTCCTAATGACAAAGATGGATTACCTACTCTGCTTGACGA 778
Query 758 AAATAAGCACTGAACCAGGATTTCTTGATAGCCATATTCCACTTCACCGTACACCAGTCG 817
|| ||||| | |||| ||||||||||||| ||||||||| | || |||| | ||| |
Sbjct 779 AA-TAAGCTCCAAACCCGGATTTCTTGATAACCATATTCCGCGCCAGCGTATATTAGTGG 837
Query 818 ATGCTTT-GAGAATTCCGAAGTTGAACTTCTCTTTTGAGTTTAAAGCTTCAGAAGTTTTG 876
| | || | || |||| ||||| || ||||||||||| |||||||||||||| ||||||
Sbjct 838 AACCGTTCG-GAGTTCCCAAGTTTAAGTTCTCTTTTGAATTTAAAGCTTCAGATGTTTTG 896
Query 877 AAAGACATGGGGCTTACTTCT-CCATTTACTTCCAAAGGTAATTTAACTGAGATGGTTGA 935
|| || |||||||| |||| | |||||||| | | |||| | |||| |||||||||||
Sbjct 897 AAGGAAATGGGGCTGACTT-TACCATTTACA-C-AT-GGTAGTCTAACCGAGATGGTTGA 952
Query 936 TTCGCCTTC-------GA-A--CG--GTGAT----A-AACT-GCACGTCTCAAGCATTAT 977
|||||||| || | | ||| | | || | | ||||||||| || |
Sbjct 953 GTCGCCTTCCATTCCCGAGAATCTATGTGTTGCCGAGAATTTGTACGTCTCAAATTTTTT 1012
Query 978 TCATAAAGCTTGCATTGAGGTGGATGAAGAGGGAACCGAAGCTGCAGCGGTCTCTGTTGC 1037
||| |||||||||||||||||||||||||||||||| ||||||| || || ||||||||
Sbjct 1013 TCACAAAGCTTGCATTGAGGTGGATGAAGAGGGAACTGAAGCTGTTGCCGTTTCTGTTGC 1072
Query 1038 CATCATGATGCCCCA-ATGTT-T-GATGCGGAACCCGGATTTTGTAGCTGACCATCCATT 1094
|| ||||| | ||||| | |||| ||| | |||| |||||||||||||||||
Sbjct 1073 CAGCATGACAAAGGACATGTTGTTGATG-GGA----G-ATTTCGTAGCTGACCATCCATT 1126
Query 1095 TCTGTTCACTGTGAGAGAAGACAATAGTGGAGTAATTTTGTTCATTGGTCAAGTTCTTGA 1154
||| ||||| ||||||||||| || |||||||| ||||||||||| ||||||||||||||
Sbjct 1127 TCTATTCACAGTGAGAGAAGAGAAGAGTGGAGTGATTTTGTTCATGGGTCAAGTTCTTGA 1186
Query 1155 TCCTTCTAAACATTGA 1170
|||||| |||||||||
Sbjct 1187 TCCTTCAAAACATTGA 1202
> Ahg900194 jgi|Araly1|900194|Al_scaffold_0004_844
Length=369
Score = 488 bits (264), Expect = 4e-137
Identities = 330/360 (92%), Gaps = 11/360 (3%)
Strand=Plus/Plus
Query 1 ATGGAGTTAGGAAAATCAATTGAGAACCAAAACAACGTCGTGGCAAGACTAGCAAAGAAA 60
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1 ATGGAGTTAGGAAAATCAATTGAGAATCAAAACAACGTCGTGGTAAGACTAGCAAAGAAA 60
Query 61 GTCATTGAAACAGATGTCGCCAATGGCTCCAATGTTGTCTTTTCACCGATGTCAATCAAC 120
|||||||| || ||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GTCATTGATAC-CATG--GCCAATGGCTCCAACGTTGTCTTTTCACCGATGTCAATCAAC 117
Query 121 GTTTTGCTCAGCCTCATCGCCGCTGGTTCTAATCCCGTCACCAAAGAAGAAATCCTCTCA 180
|||||||| ||||||||||| |||||||| ||| | ||||||||||||||||||||||||
Sbjct 118 GTTTTGCTTAGCCTCATCGCTGCTGGTTCCAATACTGTCACCAAAGAAGAAATCCTCTCA 177
Query 181 TTCCTCATGTCACCGTCTACGGATCACCTTAACGCGGTCTTGGCCAAGATCG-CGGACGG 239
|||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 178 TTCCTCATGTCACCGTCTACGGATCACCTTAACGCGGTCTTGGCCAAGAT-GACAGACGA 236
Query 240 CGGCACCGAGAGA-A-GTGATTTGTGCTTATCTACGGCTCACGGTGTCTGGATCGACAAG 297
||||||||||||| | ||||||||||||||||||||||| ||||||| ||||| ||||||
Sbjct 237 CGGCACCGAGAGAGAAGTGATTTGTGCTTATCTACGGCTAACGGTGTATGGATTGACAAG 296
Query 298 TCT-TCTTATTTG-AAGCCTTCCTTTAAAGAGCTTTTGGAGAATTCCTACAAGGCTTCTT 355
||| | || |||| || |||||||||||||||||||||||||| || ||||||||| |||
Sbjct 297 TCTGT-TTCTTTGCAA-CCTTCCTTTAAAGAGCTTTTGGAGAAATCGTACAAGGCTACTT 354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43650739965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5