BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26400.1
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481495 jgi|Araly1|481495|fgenesh2_kg.4__555__AT2G26400.1 1027 0.0
Ahg946890 jgi|Araly1|946890|scaffold_703119.1 723 0.0
Ahg493429 jgi|Araly1|493429|fgenesh2_kg.7__2862__AT4G14716.1 667 0.0
> Ahg481495 jgi|Araly1|481495|fgenesh2_kg.4__555__AT2G26400.1
Length=726
Score = 1027 bits (556), Expect = 0.0
Identities = 674/731 (92%), Gaps = 8/731 (1%)
Strand=Plus/Plus
Query 10 AGAAGAATAACCATGGGTGAAGCCGCT-AAGGATCAAACTGAAGAAGTGATTCAAGCTTG 68
||| |||||||||||| |||||||| | | |||||||| ||||||| ||||||||||||
Sbjct 1 AGAGGAATAACCATGGTTGAAGCCG-TGAGGGATCAAAGAGAAGAAGCGATTCAAGCTTG 59
Query 69 GTACTTGGATAATAAGGAAGAGGATCAGAAACTTCCTCACCACAAGGATCCTAAGGAATT 128
||| |||||| | || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 60 GTATTTGGATGACAATGAAGAGGATCAGAAACTTCCTCACCACAAGGATCCTAAGGAGTT 119
Query 129 TGTATCTTTGGACAAACTTGCAGAGCTTGGAGTACTTTGCTGGAGACTTGATGCTGATAA 188
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 120 TGTATCTTTGGACAAACTTGCAGAGCTTGGAGTACTTAGCTGGAGACTTGACGCTGATAA 179
Query 189 CTATGAAACCGATGAGGAATTGAAAAGGATCCGCGAATCTCGTGGTTACTCCTACATGGA 248
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 180 CTATGAAACCGATGAGGAGTTGAAAAAGATCCGCGAATCTCGTGGTTACTCCTACATGGA 239
Query 249 C-TTATGTGAGGTGTGTCCAGAGAAGCTTCCAAACTATGAAGAAAAAGTAAAGATGTTTT 307
| || ||||||||||||||| | ||||||||||||||||||| || ||||||||||||||
Sbjct 240 CATT-TGTGAGGTGTGTCCAAAAAAGCTTCCAAACTATGAAGCAACAGTAAAGATGTTTT 298
Query 308 TTGAAGAACATTTACATATTGATGAAGAGATCCGTTACTGCCTCGCAGGAAGTGGATACT 367
||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 299 TTGTAGAACATTTACACATTGATGAAGAGATTCGTTACTGCCTCGCAGGAAGTGGATACT 358
Query 368 TTGATGTGAGGGATCTCAATGATATTTGGATTAGAGTATGGGTAAAGAAGGGAGGTTTGA 427
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 359 TTGATGTGAGGGATCTCAATGATGTTTGGATTAGAGTATGGGTAAAGAAGGGAGGTATGA 418
Query 428 TAGTCTTCCCTGCTGGAATATATCATCGCTTCACCGTGGACTCGGACAACTATATGAAGG 487
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 419 TAGTCTTCCCTGCTGGAATATATCATCGCTTCACCGTGGACTCAGACAATTATATGAAGG 478
Query 488 CAATGCGTCTTTTCGTGGGTGGACCAGTGTGGACTGCTTATAATCGCCCACATGACCATC 547
||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 479 CAATGCGGCTTTTCGTGGGTGGACCAGTGTGGACTGCTTACAATCGCCCACACGACCATC 538
Query 548 TTCCTGCAAGGAAAGCGTATATGAAAAAATTCTTGAAGGTGATTGGGGACCGTAACATAG 607
|||||||||||| |||||||||| | |||||| ||||||||||| ||||||||| |||||
Sbjct 539 TTCCTGCAAGGATAGCGTATATGGATAAATTCGTGAAGGTGATTAGGGACCGTACCATAG 598
Query 608 ACGCTTCAGCGTAAAGA-ACTCTCGGGGATCAGATTTCTATAAGCTAAACATATGTTTAG 666
||||||||||||| || |||||| || ||||||||||||||||||||||||||||||||
Sbjct 599 ACGCTTCAGCGTAGAGGGACTCTCAGGCATCAGATTTCTATAAGCTAAACATATGTTTAG 658
Query 667 ATGTTGTCTTTAATTATGCTTTATTATGTTTACAACATGGAAACCGAAGACATTTTGGTT 726
||| ||| | | |||||||||||| ||||||| || | |||||||||||| || ||||
Sbjct 659 ATGATGT-TGTCTTTATGCTTTATTGTGTTTACCAC-TA-AAACCGAAGACACTTCGGTT 715
Query 727 CATGTGTCTTT 737
| |||||||||
Sbjct 716 CGTGTGTCTTT 726
> Ahg946890 jgi|Araly1|946890|scaffold_703119.1
Length=643
Score = 723 bits (391), Expect = 0.0
Identities = 544/618 (88%), Gaps = 10/618 (2%)
Strand=Plus/Plus
Query 18 AACCATGGGTGAAGCCGCTAAGGATCAAACTGAAGAAGTGATTCAAGCTTGGTACT-TGG 76
|||||||||||||| | ||||||| || ||||| ||||| || |||||||| | |||
Sbjct 19 AACCATGGGTGAAGTGGTTAAGGATGGAAGAGAAGATGTGATCCAGGCTTGGTA-TATGG 77
Query 77 ATAATAAG-GAAGAGGATCAGAAACTTCCTCACCACAAGGATCCTAAGGAATTTGTATCT 135
|| | || ||||||||||||| ||||||||||||||||||||||||||| ||| |||||
Sbjct 78 ATGA-CAGCGAAGAGGATCAGAGACTTCCTCACCACAAGGATCCTAAGGAGTTTCTATCT 136
Query 136 TTGGACAAACTTGCAGAGCTTGGAGTACTTTGCTGGAGACTTGATGCTGATAACTATGAA 195
||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||| |||
Sbjct 137 TTGGATAAACTTGCAGAGCTGGGAGTACTTAGCTGGAGACTTGATGCTGATAACTACGAA 196
Query 196 ACCGATGAGGAATTGAAAAGGATCCGCGAATCTCGTGGTTACTCCTACATGGACTTATGT 255
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 197 ACCGATGAGGAATTGAAAAAGATCCGCGAATCTCGTGGTTACTCCTACATGGACTTTTGT 256
Query 256 GAGGTGTGTCCAGAGAAGCTTCCAAACTATGAAGAAAAAGTAAAGATGTTTTTT-GAAGA 314
||||| || || || |||||||||||||||||||| |||||||||| | ||||| |||||
Sbjct 257 GAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGAGAAAGTAAAGA-GCTTTTTCGAAGA 315
Query 315 ACATTTACATATTGATGAAGAGATCCGTTACTGCCTCGCAGGAAGTGGATACTTTGATGT 374
|||||| || | |||||||||||||||||||||| | |||||||| || |||||||||||
Sbjct 316 ACATTTGCACACTGATGAAGAGATCCGTTACTGCGTTGCAGGAAGCGGTTACTTTGATGT 375
Query 375 GAGGGATCTCAATGATAT-TTGGATTAGAGTATGGGTAAAGAAGGGAGGTTTGATAGTCT 433
|||||||| |||||| | ||||||||||||||||||||||||||||||| |||||||||
Sbjct 376 GAGGGATCGCAATGA-AGCTTGGATTAGAGTATGGGTAAAGAAGGGAGGTATGATAGTCT 434
Query 434 TCCCTGCTGGAATATATCATCGCTTCACCGTGGACTCGGACAACTATATGAAGGCAATGC 493
| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 435 TACCTGCTGGAATATATCATCGCTTCACCGTGGACTCAGACAACTATATCAAGGCAATGC 494
Query 494 GTCTTTTCGTGGGTGGACCAGTGTGGACTGCTTATAATCGCCCACATGACCATCTTCCTG 553
| ||||||||||||| ||| |||||||| | || ||||||||||| |||||||| ||||
Sbjct 495 GGCTTTTCGTGGGTGAACCGGTGTGGACACCATACAATCGCCCACACGACCATCTCCCTG 554
Query 554 CAAGGAAAGCGTATAT-GAAAAAATTCTTGAAGGTGATTGGGGACCGTAACATAGACGCT 612
||||||||| ||| | || || ||| | ||||||| ||||| | || |||||||||
Sbjct 555 CAAGGAAAGAGTACGTCGATAAT-TTCGTCAAGGTGAGTGGGGGCGGTGCCATAGACGCA 613
Query 613 TCAGCGTAAAGAACTCTC 630
|||||||| || ||||||
Sbjct 614 TCAGCGTAGAGGACTCTC 631
> Ahg493429 jgi|Araly1|493429|fgenesh2_kg.7__2862__AT4G14716.1
Length=820
Score = 667 bits (361), Expect = 0.0
Identities = 486/546 (89%), Gaps = 10/546 (2%)
Strand=Plus/Plus
Query 22 ATGGGTGAAGCCGCT-AAGGATCAAACTGAAGAAGTGATTCAAGCTTGGTACT-TGGATA 79
|||||||||| || | |||||| || |||||||||||||| |||||||| | |||||
Sbjct 17 ATGGGTGAAG-CGGTCAAGGATGGAAGAGAAGAAGTGATTCAGGCTTGGTA-TATGGATG 74
Query 80 ATAAG-GAAGAGGATCAGAAACTTCCTCACCACAAGGATCCTAAGGAATTTGTATCTTTG 138
|| || ||||||||||||| |||||||||||| ||||||||||| || ||||||||||||
Sbjct 75 AT-AGTGAAGAGGATCAGAGACTTCCTCACCATAAGGATCCTAAAGAGTTTGTATCTTTG 133
Query 139 GACAAACTTGCAGAGCTTGGAGTACTTTGCTGGAGACTTGATGCTGATAACTATGAAACC 198
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 134 GACAAACTTGCAGAGCTGGGAGTACTTAGCTGGAGACTTGATGCTGATAACTATGAAACC 193
Query 199 GATGAGGAATTGAAAAGGATCCGCGAATCTCGTGGTTACTCCTACATGGACTTATGTGAG 258
|||||||| ||||||| |||||||||||| ||||| ||||| ||||||||||| ||||||
Sbjct 194 GATGAGGATTTGAAAAAGATCCGCGAATCCCGTGGCTACTCTTACATGGACTTTTGTGAG 253
Query 259 GTGTGTCCAGAGAAGCTTCCAAACTATGAAGAAAAAGTAAAGATGTTTTTT-GAAGAACA 317
|| || || || ||||||||||||||||||| |||||||||| | ||||| ||||||||
Sbjct 254 GTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTAAAGA-GCTTTTTCGAAGAACA 312
Query 318 TTTACATATTGATGAAGAGATCCGTTACTGCCTCGCAGGAAGTGGATACTTTGATGTGAG 377
||| || | |||||||||||||||||||||| | |||||||| || ||||||||||||||
Sbjct 313 TTTGCACACTGATGAAGAGATCCGTTACTGCGTTGCAGGAAGCGGTTACTTTGATGTGAG 372
Query 378 GGATCTCAATGATAT-TTGGATTAGAGTATGGGTAAAGAAGGGAGGTTTGATAGTCTTCC 436
||||| |||||| | ||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 373 GGATCGCAATGA-AGCTTGGATTAGAGTATGGGTAAAGAAGGGAGGTATGATAGTCTTAC 431
Query 437 CTGCTGGAATATATCATCGCTTCACCGTGGACTCGGACAACTATATGAAGGCAATGCGTC 496
|||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||| |
Sbjct 432 CTGCTGGAATATATCACCGCTTCACTGTGGACTCAGACAACTATATCAAGGCAATGCGGC 491
Query 497 TTTTCGTGGGTGGACCAGTGTGGACTGCTTATAATCGCCCACATGACCATCTTCCTGCAA 556
|||||||||||| ||| |||||||| | || ||||| ||||| ||||||||||||||||
Sbjct 492 TTTTCGTGGGTGAACCGGTGTGGACACCATACAATCGGCCACACGACCATCTTCCTGCAA 551
Query 557 GGAAAG 562
||||||
Sbjct 552 GGAAAG 557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32556971118
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5