BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G26400.1 Length=879 Score E Sequences producing significant alignments: (Bits) Value Ahg481495 jgi|Araly1|481495|fgenesh2_kg.4__555__AT2G26400.1 1027 0.0 Ahg946890 jgi|Araly1|946890|scaffold_703119.1 723 0.0 Ahg493429 jgi|Araly1|493429|fgenesh2_kg.7__2862__AT4G14716.1 667 0.0 > Ahg481495 jgi|Araly1|481495|fgenesh2_kg.4__555__AT2G26400.1 Length=726 Score = 1027 bits (556), Expect = 0.0 Identities = 674/731 (92%), Gaps = 8/731 (1%) Strand=Plus/Plus Query 10 AGAAGAATAACCATGGGTGAAGCCGCT-AAGGATCAAACTGAAGAAGTGATTCAAGCTTG 68 ||| |||||||||||| |||||||| | | |||||||| ||||||| |||||||||||| Sbjct 1 AGAGGAATAACCATGGTTGAAGCCG-TGAGGGATCAAAGAGAAGAAGCGATTCAAGCTTG 59 Query 69 GTACTTGGATAATAAGGAAGAGGATCAGAAACTTCCTCACCACAAGGATCCTAAGGAATT 128 ||| |||||| | || ||||||||||||||||||||||||||||||||||||||||| || Sbjct 60 GTATTTGGATGACAATGAAGAGGATCAGAAACTTCCTCACCACAAGGATCCTAAGGAGTT 119 Query 129 TGTATCTTTGGACAAACTTGCAGAGCTTGGAGTACTTTGCTGGAGACTTGATGCTGATAA 188 ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 120 TGTATCTTTGGACAAACTTGCAGAGCTTGGAGTACTTAGCTGGAGACTTGACGCTGATAA 179 Query 189 CTATGAAACCGATGAGGAATTGAAAAGGATCCGCGAATCTCGTGGTTACTCCTACATGGA 248 |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| Sbjct 180 CTATGAAACCGATGAGGAGTTGAAAAAGATCCGCGAATCTCGTGGTTACTCCTACATGGA 239 Query 249 C-TTATGTGAGGTGTGTCCAGAGAAGCTTCCAAACTATGAAGAAAAAGTAAAGATGTTTT 307 | || ||||||||||||||| | ||||||||||||||||||| || |||||||||||||| Sbjct 240 CATT-TGTGAGGTGTGTCCAAAAAAGCTTCCAAACTATGAAGCAACAGTAAAGATGTTTT 298 Query 308 TTGAAGAACATTTACATATTGATGAAGAGATCCGTTACTGCCTCGCAGGAAGTGGATACT 367 ||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 299 TTGTAGAACATTTACACATTGATGAAGAGATTCGTTACTGCCTCGCAGGAAGTGGATACT 358 Query 368 TTGATGTGAGGGATCTCAATGATATTTGGATTAGAGTATGGGTAAAGAAGGGAGGTTTGA 427 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 359 TTGATGTGAGGGATCTCAATGATGTTTGGATTAGAGTATGGGTAAAGAAGGGAGGTATGA 418 Query 428 TAGTCTTCCCTGCTGGAATATATCATCGCTTCACCGTGGACTCGGACAACTATATGAAGG 487 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 419 TAGTCTTCCCTGCTGGAATATATCATCGCTTCACCGTGGACTCAGACAATTATATGAAGG 478 Query 488 CAATGCGTCTTTTCGTGGGTGGACCAGTGTGGACTGCTTATAATCGCCCACATGACCATC 547 ||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 479 CAATGCGGCTTTTCGTGGGTGGACCAGTGTGGACTGCTTACAATCGCCCACACGACCATC 538 Query 548 TTCCTGCAAGGAAAGCGTATATGAAAAAATTCTTGAAGGTGATTGGGGACCGTAACATAG 607 |||||||||||| |||||||||| | |||||| ||||||||||| ||||||||| ||||| Sbjct 539 TTCCTGCAAGGATAGCGTATATGGATAAATTCGTGAAGGTGATTAGGGACCGTACCATAG 598 Query 608 ACGCTTCAGCGTAAAGA-ACTCTCGGGGATCAGATTTCTATAAGCTAAACATATGTTTAG 666 ||||||||||||| || |||||| || |||||||||||||||||||||||||||||||| Sbjct 599 ACGCTTCAGCGTAGAGGGACTCTCAGGCATCAGATTTCTATAAGCTAAACATATGTTTAG 658 Query 667 ATGTTGTCTTTAATTATGCTTTATTATGTTTACAACATGGAAACCGAAGACATTTTGGTT 726 ||| ||| | | |||||||||||| ||||||| || | |||||||||||| || |||| Sbjct 659 ATGATGT-TGTCTTTATGCTTTATTGTGTTTACCAC-TA-AAACCGAAGACACTTCGGTT 715 Query 727 CATGTGTCTTT 737 | ||||||||| Sbjct 716 CGTGTGTCTTT 726 > Ahg946890 jgi|Araly1|946890|scaffold_703119.1 Length=643 Score = 723 bits (391), Expect = 0.0 Identities = 544/618 (88%), Gaps = 10/618 (2%) Strand=Plus/Plus Query 18 AACCATGGGTGAAGCCGCTAAGGATCAAACTGAAGAAGTGATTCAAGCTTGGTACT-TGG 76 |||||||||||||| | ||||||| || ||||| ||||| || |||||||| | ||| Sbjct 19 AACCATGGGTGAAGTGGTTAAGGATGGAAGAGAAGATGTGATCCAGGCTTGGTA-TATGG 77 Query 77 ATAATAAG-GAAGAGGATCAGAAACTTCCTCACCACAAGGATCCTAAGGAATTTGTATCT 135 || | || ||||||||||||| ||||||||||||||||||||||||||| ||| ||||| Sbjct 78 ATGA-CAGCGAAGAGGATCAGAGACTTCCTCACCACAAGGATCCTAAGGAGTTTCTATCT 136 Query 136 TTGGACAAACTTGCAGAGCTTGGAGTACTTTGCTGGAGACTTGATGCTGATAACTATGAA 195 ||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct 137 TTGGATAAACTTGCAGAGCTGGGAGTACTTAGCTGGAGACTTGATGCTGATAACTACGAA 196 Query 196 ACCGATGAGGAATTGAAAAGGATCCGCGAATCTCGTGGTTACTCCTACATGGACTTATGT 255 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 197 ACCGATGAGGAATTGAAAAAGATCCGCGAATCTCGTGGTTACTCCTACATGGACTTTTGT 256 Query 256 GAGGTGTGTCCAGAGAAGCTTCCAAACTATGAAGAAAAAGTAAAGATGTTTTTT-GAAGA 314 ||||| || || || |||||||||||||||||||| |||||||||| | ||||| ||||| Sbjct 257 GAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGAGAAAGTAAAGA-GCTTTTTCGAAGA 315 Query 315 ACATTTACATATTGATGAAGAGATCCGTTACTGCCTCGCAGGAAGTGGATACTTTGATGT 374 |||||| || | |||||||||||||||||||||| | |||||||| || ||||||||||| Sbjct 316 ACATTTGCACACTGATGAAGAGATCCGTTACTGCGTTGCAGGAAGCGGTTACTTTGATGT 375 Query 375 GAGGGATCTCAATGATAT-TTGGATTAGAGTATGGGTAAAGAAGGGAGGTTTGATAGTCT 433 |||||||| |||||| | ||||||||||||||||||||||||||||||| ||||||||| Sbjct 376 GAGGGATCGCAATGA-AGCTTGGATTAGAGTATGGGTAAAGAAGGGAGGTATGATAGTCT 434 Query 434 TCCCTGCTGGAATATATCATCGCTTCACCGTGGACTCGGACAACTATATGAAGGCAATGC 493 | ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 435 TACCTGCTGGAATATATCATCGCTTCACCGTGGACTCAGACAACTATATCAAGGCAATGC 494 Query 494 GTCTTTTCGTGGGTGGACCAGTGTGGACTGCTTATAATCGCCCACATGACCATCTTCCTG 553 | ||||||||||||| ||| |||||||| | || ||||||||||| |||||||| |||| Sbjct 495 GGCTTTTCGTGGGTGAACCGGTGTGGACACCATACAATCGCCCACACGACCATCTCCCTG 554 Query 554 CAAGGAAAGCGTATAT-GAAAAAATTCTTGAAGGTGATTGGGGACCGTAACATAGACGCT 612 ||||||||| ||| | || || ||| | ||||||| ||||| | || ||||||||| Sbjct 555 CAAGGAAAGAGTACGTCGATAAT-TTCGTCAAGGTGAGTGGGGGCGGTGCCATAGACGCA 613 Query 613 TCAGCGTAAAGAACTCTC 630 |||||||| || |||||| Sbjct 614 TCAGCGTAGAGGACTCTC 631 > Ahg493429 jgi|Araly1|493429|fgenesh2_kg.7__2862__AT4G14716.1 Length=820 Score = 667 bits (361), Expect = 0.0 Identities = 486/546 (89%), Gaps = 10/546 (2%) Strand=Plus/Plus Query 22 ATGGGTGAAGCCGCT-AAGGATCAAACTGAAGAAGTGATTCAAGCTTGGTACT-TGGATA 79 |||||||||| || | |||||| || |||||||||||||| |||||||| | ||||| Sbjct 17 ATGGGTGAAG-CGGTCAAGGATGGAAGAGAAGAAGTGATTCAGGCTTGGTA-TATGGATG 74 Query 80 ATAAG-GAAGAGGATCAGAAACTTCCTCACCACAAGGATCCTAAGGAATTTGTATCTTTG 138 || || ||||||||||||| |||||||||||| ||||||||||| || |||||||||||| Sbjct 75 AT-AGTGAAGAGGATCAGAGACTTCCTCACCATAAGGATCCTAAAGAGTTTGTATCTTTG 133 Query 139 GACAAACTTGCAGAGCTTGGAGTACTTTGCTGGAGACTTGATGCTGATAACTATGAAACC 198 ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 134 GACAAACTTGCAGAGCTGGGAGTACTTAGCTGGAGACTTGATGCTGATAACTATGAAACC 193 Query 199 GATGAGGAATTGAAAAGGATCCGCGAATCTCGTGGTTACTCCTACATGGACTTATGTGAG 258 |||||||| ||||||| |||||||||||| ||||| ||||| ||||||||||| |||||| Sbjct 194 GATGAGGATTTGAAAAAGATCCGCGAATCCCGTGGCTACTCTTACATGGACTTTTGTGAG 253 Query 259 GTGTGTCCAGAGAAGCTTCCAAACTATGAAGAAAAAGTAAAGATGTTTTTT-GAAGAACA 317 || || || || ||||||||||||||||||| |||||||||| | ||||| |||||||| Sbjct 254 GTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTAAAGA-GCTTTTTCGAAGAACA 312 Query 318 TTTACATATTGATGAAGAGATCCGTTACTGCCTCGCAGGAAGTGGATACTTTGATGTGAG 377 ||| || | |||||||||||||||||||||| | |||||||| || |||||||||||||| Sbjct 313 TTTGCACACTGATGAAGAGATCCGTTACTGCGTTGCAGGAAGCGGTTACTTTGATGTGAG 372 Query 378 GGATCTCAATGATAT-TTGGATTAGAGTATGGGTAAAGAAGGGAGGTTTGATAGTCTTCC 436 ||||| |||||| | ||||||||||||||||||||||||||||||| |||||||||| | Sbjct 373 GGATCGCAATGA-AGCTTGGATTAGAGTATGGGTAAAGAAGGGAGGTATGATAGTCTTAC 431 Query 437 CTGCTGGAATATATCATCGCTTCACCGTGGACTCGGACAACTATATGAAGGCAATGCGTC 496 |||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||| | Sbjct 432 CTGCTGGAATATATCACCGCTTCACTGTGGACTCAGACAACTATATCAAGGCAATGCGGC 491 Query 497 TTTTCGTGGGTGGACCAGTGTGGACTGCTTATAATCGCCCACATGACCATCTTCCTGCAA 556 |||||||||||| ||| |||||||| | || ||||| ||||| |||||||||||||||| Sbjct 492 TTTTCGTGGGTGAACCGGTGTGGACACCATACAATCGGCCACACGACCATCTTCCTGCAA 551 Query 557 GGAAAG 562 |||||| Sbjct 552 GGAAAG 557 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32556971118 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5