BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26410.1
Length=1708
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900198 jgi|Araly1|900198|Al_scaffold_0004_848 2344 0.0
> Ahg900198 jgi|Araly1|900198|Al_scaffold_0004_848
Length=1551
Score = 2344 bits (1269), Expect = 0.0
Identities = 1435/1517 (95%), Gaps = 4/1517 (0%)
Strand=Plus/Plus
Query 194 AAACCCGAGAAACCGAAGAGGAAATGGTCGTTTGGGAAACAAAAGAGTAGAGAATCTTTT 253
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 37 AAACCCGAGAAACCCAAGAGGAAATGGTCGTTTGGGAAACAAAAGAGTAGAGACTCTTTT 96
Query 254 GATTTCCCTCTGGAGGAGACTCCACCGGTTGACCCTTCACCTTCTTCTGTTCATCGTCCA 313
||||||||| |||| ||||||||| |||||||||||||| | |||||||||||||| |||
Sbjct 97 GATTTCCCTGTGGAAGAGACTCCAACGGTTGACCCTTCATCGTCTTCTGTTCATCGGCCA 156
Query 314 TATCCACCGCCTCCCCCGTTGCCGGATTTTGCTCCTCAGCCGTTGTTACCACCACCGTCT 373
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 157 TCTCCACCGCCTCCTCCGTTGCCGGATTTTGCTCCTCAGCCGTTGTTACCACCACCATCT 216
Query 374 CCACCTCCTCCTCCTCCGGCATATACCATCAATACAAGAATCTATGGTGAGTCTAAAGAA 433
|||||||||||||||||||||||||||| |||||||||| |||||| ||| |||||||||
Sbjct 217 CCACCTCCTCCTCCTCCGGCATATACCAGCAATACAAGACTCTATGTTGACTCTAAAGAA 276
Query 434 TCAAAGAATAGACAAGCTTTAGCTCTTGCATCGGCTGTTGCAGCCGAAGCAGCTGTGGTA 493
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 GCAAAGAATAGGCAAGCTTTAGCTCTTGCATCGGCTGTTGCAGCCGAAGCAGCTGTGGTA 336
Query 494 GCTGCACATGCTGCCGCGGAGGTTA-TACGTCTCACGACCCCATCAACACCTCAAATTGA 552
|||||||||||||||||||||| || | |||||||||||||| || |||| ||| | |||
Sbjct 337 GCTGCACATGCTGCCGCGGAGG-TAGTGCGTCTCACGACCCCTTCCACACATCAGACTGA 395
Query 553 GGAATCAAAGGAGGAAACTGCCGCAATCAAGATCCAAAATGCGTATAGATGTTACACGGC 612
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 396 GGAATCAAAGGAGGAAACTGCCGCAATCAAGATCCAAAATGCGTATAGATGTTACAAGGC 455
Query 613 GAGACGCACTCTTCGTGCGCTGCGAGGAATGGCTAGACTCAAAAGTTTGCTGCAAGGAAA 672
||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||
Sbjct 456 GAGACGCACTCTTCGTGCGTTGCGAGGAATGGCCAGACTCAAAAGTTTGCTTCAAGGAAA 515
Query 673 ATACGTCAAAAGACAAATGAATGCGATGCTTAGCTCAATGCAAACTCTTACACGTTTACA 732
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 516 ATACGTCAAAAGACAAATGAACGCGATGCTTAGCTCAATGCAAACTCTTACACGTTTACA 575
Query 733 AACACAGATTCAAGAGAGGAGGAATCGGTTATCTGCAGAGAACAAAACTCGTCACAGGCT 792
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 AACACAGATTCAAGAAAGGAGGAATCGGTTATCTGCAGAGAACAAAACTCGTCACAGGCT 635
Query 793 GATCCAACAGAAGGGTCACCAGAAAGAAAACCATCAGAATTTGGTTACCGCGGGAAATTT 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 GATCCAACAGAAGGGTCACCAGAAAGAAAACCATCAGAATTTGGTTACCGCGGGAAATTT 695
Query 853 TGATTCCAGCAATAAATCAAAGGAACAGATCGTGGCAAGGTCGGTGAATCGAAAAGAAGC 912
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 696 TGATTCCAGCAATAAATCAAAGGAACAGATCGTGGCGAGGTCCGTGAATCGAAAAGAAGC 755
Query 913 TTCAGTAAGACGAGAAAGGGCATTGGCGTATGCTTACAGTCATCAGCAAACATGGAGAAA 972
||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 756 TTCTGTAAGACGAGAGAGGGCATTGGCTTATGCTTACAGTCATCAGCAAACGTGGAGAAA 815
Query 973 CTCTTCAAAACTTCCACATCAGACTTTGATGGACACAAACACAACAGATTGGGGTTGGAG 1032
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 816 TTCTTCAAAACTTCCACACCAGACTTTGATGGACACAAACACAACAGACTGGGGTTGGAG 875
Query 1033 TTGGCTTGAGAGGTGGATGGCTTCTCGTCCGTGGGATGCTGAATCCATTGACGATCAAGT 1092
|||||||||| | |||||||||||||| |||||||||||||||||||| ||||||||| |
Sbjct 876 TTGGCTTGAGCGTTGGATGGCTTCTCGCCCGTGGGATGCTGAATCCATCGACGATCAAAT 935
Query 1093 TTCCGTTAAAAGTTCTCTTAAACGCGAAAACTCGATCAAGAGTTCTCCTGCCAGATCTAA 1152
|||| |||||| |||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 936 TTCCCTTAAAAACTCTCTTAAACGCGAAAACTCCATCAAGACTTCTCCTGCCAGATCTAA 995
Query 1153 AACACAAAAGTCAGCTAGCCAAAGTTCTATTCAATGGCCTGTAAACAATGATACAAAGAG 1212
||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |||||
Sbjct 996 AACACTAAAGTCAGCTAGCCAAGGTTCTATCCAATGGCCTGTAAACAATGATACCAAGAG 1055
Query 1213 TAGAAAGATCGAGGTTACTAATCGCAGGCACAGTATCGGTGGTGGATCATCTGAAAACGC 1272
|| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1056 TAAAAAGATCGAGGTTGCTAATCGCAGGCACAGTATCGGTGGTGGATCATCTTCAAACGC 1115
Query 1273 TAAAGATGATGAAAGCGTTGGTAGCTCATCCTCGCGCAGAAATTCGTTGGATAATACACA 1332
||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 1116 TAAAGATGATGAAAGCGTTGGTAGCTCGTCCTCACGCAGAAATTCCTTGGATAATACACA 1175
Query 1333 AACTGTGAAATCCAAGGTTAGTGTGGAAACAACAAGCAACGTGAGTAATGCACAAACTGT 1392
|||||||||| ||||||||||||||||||||||||||||||||| |||||| ||| ||||
Sbjct 1176 AACTGTGAAAGCCAAGGTTAGTGTGGAAACAACAAGCAACGTGACTAATGCGCAACCTGT 1235
Query 1393 GAAACCCAAGGCTAATGTGGGAGCAAAAAGAAACTTGGATAACACGAAAACTTTGAAATC 1452
|||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1236 GAAACCCAAGGCTAGTGTGGGAACAAAAAGAAACTTGGATAACACGAAAGCTTTGAAATC 1295
Query 1453 CAAGTCTAGTGTGGGAACAACAGGAAACTTGGCCAACACGGAAGCTGTGAAATCTAAGGT 1512
||||||||| ||||||||||||| ||||||||| |||||| ||||||||||||| |||||
Sbjct 1296 CAAGTCTAGCGTGGGAACAACAGAAAACTTGGCTAACACGCAAGCTGTGAAATCAAAGGT 1355
Query 1513 TAATGTCGGAACAACAAGTATGCCAAAGAAGGAGGTTGT-TGCTGATAAGAAGAAACCTC 1571
|||||||||||||||| || ||||||||||||||||||| | |||||||||||||| |||
Sbjct 1356 TAATGTCGGAACAACAGGTTTGCCAAAGAAGGAGGTTGTGT-CTGATAAGAAGAAAACTC 1414
Query 1572 CACAGATGGTATTGCCAAAGAAGAGGCTTTCATCTTCTACTTCTCTTGGGAAAACAAAGA 1631
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1415 CACAGATGGTATTACCAAAGAAGAGGCTTTCATCTTCTACTTCTCTTGGGAAAACGAAGA 1474
Query 1632 AATTGTCGGATTCGGATAAAGCAACAACTGGTGTTGCAAATGGAGAGAAGAAGAGAAGAA 1691
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1475 AATTGTCGGATTCGGATAAAGCAACAACTGGTGCTGCAAATGGAGAGAAGAAGAGAAGAA 1534
Query 1692 ATGGTGGTAGCAGTTAA 1708
| |||||||||||||||
Sbjct 1535 ACGGTGGTAGCAGTTAA 1551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64067792090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5