BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26420.1
Length=2118
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320430 jgi|Araly1|320430|fgenesh1_pm.C_scaffold_4000487 3291 0.0
> Ahg320430 jgi|Araly1|320430|fgenesh1_pm.C_scaffold_4000487
Length=2118
Score = 3291 bits (1782), Expect = 0.0
Identities = 2009/2121 (95%), Gaps = 6/2121 (0%)
Strand=Plus/Plus
Query 1 ATGCAAGAGACAGTGTTCCTCTTCACGGAAGAGAATCTGAATAAAGAGCAATCGTTGGGG 60
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||
Sbjct 1 ATGCAAGAGACAGTGTTCCTCTTCACGGAAGAGAATCTGAACAAAGAGCCATCGTCAGGG 60
Query 61 GTCAAGTACAAACAAAGCTCCCGGCGGGTGGTTCCCATGACAAGTTGCGAGGTGAGTGAT 120
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GTCAAATACAAACAAAGCTCCCGGCGCGTGGTTCCCATGACAAGTTGCGAGGTGAGTGAT 120
Query 121 ACGGCTGCCGAGATTAGAATAGTAGAGAAGGTGCTAAAGAACGGCGACCTTTATAACGGA 180
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 GCGGCTGCCGAGATTAGAATAGTAGAGAAGGTGCTAAAGAATGGCGACCTTTATAACGGA 180
Query 181 GGCTTATCAGCGGGTGTTCCGCATGGGACAGGGAAGTATTTGTGGTCGGATGGTTGTATG 240
|||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 181 GGCTTATCGGCGGGTGTTCCACATGGGACAGGGAAGTATCTGTGGTCGGATGGTTGTATG 240
Query 241 TACG-AGGGTGAGTGGACACGTGGCAAAGCGAGCGGTAAAGGACGTTTTTCTTGGCCGTC 299
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TACGAAGGG-GAGTGGACACGTGGCAAAGCGAGCGGTAAAGGACGTTTTTCTTGGCCGTC 299
Query 300 CGGAGCGACCTATGAGGGTCAGTTCAAGGACGGTCGAATGGATGGCGAAGGAACGTTCAT 359
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 300 CGGAGCGACCTATGAGGGTCAGTTCAAGGACGGTCGAATGGACGGCGAAGGAACGTTCAT 359
Query 360 TGGAATAGATGGCGACACTTATAGAGGGCATTGGCTGTGGGGAAGAAAGCATGGCTATGG 419
|||||| || || || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 TGGAATCGACGGGGATACTTATAGAGGGCATTGGCTGTGGGGAAGAAAGCATGGCTACGG 419
Query 420 AGAGAAGCGGTATGCAAACGGCGATGGTTACCAAGGAAACTGGAAGGCCAATCTGCAAGA 479
|||||| |||||||||||||| || | |||||||||||||||||||||||||||||| ||
Sbjct 420 AGAGAAACGGTATGCAAACGGTGACGTTTACCAAGGAAACTGGAAGGCCAATCTGCAGGA 479
Query 480 TGGTAATGGACGTTATGTGTGGAGCGATGGGAATGAGTATGTGGGAGAGTGGAAGAATGG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 480 TGGTAATGGACGTTATGTGTGGAGCGATGGGAATGAGTATGTGGGAGAGTGGAAGAACGG 539
Query 540 TGTTATTTCGGGGAAAGGGAAAATGACGTGGGCTAATGGAAACCGTTATGATGGGTTATG 599
|||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 540 TGTTATTTCGGGGAAAGGGACCATGACGTGGGCTAACCGAAACCGTTATGATGGGCTATG 599
Query 600 GGAAAATGGAGCCCCGGTTGGGAAAGGGGTGTTGAGTTGGGGTGAAGAGAAGACTAGTTA 659
|||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 GGAAAATGGAGCTCCTGTTGGGAAAGGGGTGTTGAGTTGGGGTGAGGAGAAGACTAGTTA 659
Query 660 TAATGGGTGGGGGAGGAAGAGCAAGAAGAAAGATGAAGAGATTGTGCAGAACCATAAGCT 719
|||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||
Sbjct 660 TAATGGGTGGGGGAGGAAGAGCAAAAAGAAAGATGATGAGATTGTGCAGCACCATAAGCT 719
Query 720 CTCTTCCGTTGAAACTTTGTCAGCGAATACCAATTTCCCGAGGATTTGTATATCGGAATT 779
|||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 720 CTCTTCGGTTGAAACTTTGTCAACGAATACCAATTTCCCGAGAATTTGTATATCGGAATT 779
Query 780 GGAGGATACTGGCGTGTGTGATCATGTAGAGGCGAGTCCATACACGAGCGAGTCGGATAC 839
|||||||| ||||||||||||||| |||||||||||||| |||||||||||||| |||||
Sbjct 780 GGAGGATAGTGGCGTGTGTGATCACGTAGAGGCGAGTCCGTACACGAGCGAGTCAGATAC 839
Query 840 GAGTGGATGTGGAGAGCAAGAGTGGGCAAGAAGCCCTTTGCTTTTGGAGAGTGGTGGTGC 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GAGTGGATGTGGAGAGCAAGAGTGGGCAAGAAGCCCTTTGCTTTTGGAGAGTGGTGGTGC 899
Query 900 CATGAGTGTT-CAACAAAGTCCTAGGTGGTTGGATGAAGGAGATGTTAAGAAACCGGGGC 958
||||||| || ||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 900 CATGAGT-TTGCAACAAAGTCCGAAGTGGTTGGATGAAGGAGATGTTAAGAAACCGGGGC 958
Query 959 ATACGGTTACGGCTGGACATAAGAACTATGATTTAATGTTAAATCTACAACTTGGGATTA 1018
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 959 ATACGGTTACGGCTGGACATAAGAACTATGATTTGATGTTAAATCTACAACTTGGGATTA 1018
Query 1019 GGTACTCTGTTGGGAAACATGCTTCCCTTTTGAGGGAACTTAGGCATAGTGATTTTGATC 1078
||||||||||||||||||||||||| |||| |||||||| || ||| ||||||||||||
Sbjct 1019 GGTACTCTGTTGGGAAACATGCTTCAATTTTAAGGGAACTCAGACATTGTGATTTTGATC 1078
Query 1079 CCAAGGATAAGCAATGGACTAGGTTTCCCCCAGAAGGCTCTAAGTCTACACCTCCTCATC 1138
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1079 CCAAGGATAAGCAATGGACAAGGTTTCCCCCAGAAGGCTCTAAGTCTACCCCTCCCCATC 1138
Query 1139 TATCTGCCGAGTTCAAATGGAAGGACTATTGCCCTATTGTGTTTAGGCATCTAAGAGATT 1198
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1139 TATCTATCGAGTTCAAATGGAAGGACTATTGCCCTATTGTGTTTAGGCATTTAAGAGACT 1198
Query 1199 TATTCGCGATAGACCAAGCGGACTACATGCTCGCTATTTGCGGAAATGAATCTCTTCGGG 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TATTCGCGATAGACCAAGCGGACTACATGCTCGCTATTTGCGGAAATGAATCTCTTCGGG 1258
Query 1259 AATTTGCATCTCCTGGAAAGAGTGGAAGCGCTTTTTACTTGACTCAAGATGAACGCTACA 1318
||||| | || || ||||||||||||||| | ||||||||||||||||||||||||| ||
Sbjct 1259 AATTTTCGTCGCCAGGAAAGAGTGGAAGCTCCTTTTACTTGACTCAAGATGAACGCTTCA 1318
Query 1319 TGATCAAAACCATGAAAAAATCCGAAATTAAGGTATTGCTTAAGATGCTCCCAAATTATT 1378
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1319 TGATCAAAACCATGAAAAAGTCCGAAATTAAGGTGTTGCTTAAGATGCTCCCAAATTATT 1378
Query 1379 ACGAGCATGTTTCCAAGTACAAGAACTCTTTAGTCACCAAGTTCTTTGGGGTGCATTGCG 1438
| |||||||||||||| |||||||||||||| || ||||||||||| || ||||||||||
Sbjct 1379 ATGAGCATGTTTCCAAATACAAGAACTCTTTGGTTACCAAGTTCTTCGGCGTGCATTGCG 1438
Query 1439 TCAAACCAGTAGGAGGCCAAAAGACTCGGTTCATAGTGATGGGAAATCTGTTTTGTTCGG 1498
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1439 TCAAACCGGTAGGAGGCCAAAAGACTCGGTTCATAGTGATGGGCAATCTGTTTTGTTCGG 1498
Query 1499 AGTATCGTATACACAAACGGTTTGACTTGAAAGGTTCATCACATGGCCGTACTATCGACA 1558
||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||
Sbjct 1499 AGTATCGTATACACAAACGGTTTGATTTGAAAGGTTCATCACATGGCCGTACCATTGACA 1558
Query 1559 AAGATGAAGGTGAAATCGACGAGACCACAACACTCAAAGACTTGGATCTCAAGTATGTGT 1618
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 AGGGTGAAGGTGAAATCGACGAGACCACAACACTCAAAGACTTGGATCTCAAGTATGTGT 1618
Query 1619 TTCGACTCGAGACCTCATGGTTCCAAGCCTTCATTAACCAAATCGACCTCGATTGTGAGT 1678
||||||| ||||| |||||||| ||||||||||| |||||||||||| ||||||||||||
Sbjct 1619 TTCGACTTGAGACTTCATGGTTTCAAGCCTTCATCAACCAAATCGACATCGATTGTGAGT 1678
Query 1679 TTCTTGAAGCTGAGAGGATTATGGATTATAGTCTTTTGATTGGTCTCCATTTCCGTGAAT 1738
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 1679 TTCTTGAAGCTGAGAGGATTATGGACTACAGTCTCTTGATTGGTCTCCATTTCCGTGAAT 1738
Query 1739 CTGGCATGCGTGACGACATTTCCTTGGGCATCGGTCGACGAGATCAGGAGGACAAATTGA 1798
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 CTGGCTTGCGTGACGACATTTCCTTGGGCATCGGTCGACGAGATCAGGAGGACAAATTGA 1798
Query 1799 TGAGAGGTAATGGACCCTTAATGAGACTAGGGGAAAGTACACCGGCAAAAGCAGAGCAGG 1858
|||||||||| || || ||| |||||||||||||||| |||||||||||||||||||| |
Sbjct 1799 TGAGAGGTAACGGGCCATTATTGAGACTAGGGGAAAGCACACCGGCAAAAGCAGAGCAAG 1858
Query 1859 TGAGCAGATTTGAGGAAGAGACGTGGGAAGAAGATG-CAATTGACAACTCAAATCCTAAG 1917
|||||||||||| ||||||| ||||||||||||| | || ||||||||||||||||||||
Sbjct 1859 TGAGCAGATTTGTGGAAGAGTCGTGGGAAGAAGACGACA-TTGACAACTCAAATCCTAAG 1917
Query 1918 GGTACAAGGAAAGAAGCCGTTGAGGTGATCCTTTATTTCGGTGTTATTGACATTCTTCAA 1977
|||| |||||||| | ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1918 AGTACGAGGAAAGAGGTCGTTGAGGTGATCCTTTATTTTGGTGTTATTGACATTCTTCAA 1977
Query 1978 GACTATGATATCACCAAAAAACTAGAGCACGCCTACAAGTCACTCCACGCAGATCCCGCG 2037
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1978 GACTATGATATCACCAAAAAACTAGAGCACGCCTACAAGTCACTACACGTAGATCCCGCG 2037
Query 2038 TCCATTTCAGCTGTTGATCCTAAGCTTTATTCCCGAAGATTTAGAGACTTTATAAACAAA 2097
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2038 TCCATTTCAGCTGTTGATCCTAAGCTTTATTCCCGAAGATTTAGAGACTTTATAAACAGA 2097
Query 2098 ATATTCATTGAAGACAAATGA 2118
|||||||||||||| ||||||
Sbjct 2098 ATATTCATTGAAGATAAATGA 2118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79684792540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5