BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26430.1
Length=1589
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481500 jgi|Araly1|481500|fgenesh2_kg.4__560__AT2G26430.1 2098 0.0
> Ahg481500 jgi|Araly1|481500|fgenesh2_kg.4__560__AT2G26430.1
Length=1526
Score = 2098 bits (1136), Expect = 0.0
Identities = 1422/1553 (92%), Gaps = 47/1553 (3%)
Strand=Plus/Plus
Query 11 AAACTCGATTTCCCGATTTCGTCGCCTCTTCTCGTCTCTCCGCTCTCCTCGCCGCGAGTC 70
|||||||||||||| |||||||||||||||||||||||||||||| |||| ||| || ||
Sbjct 2 AAACTCGATTTCCCAATTTCGTCGCCTCTTCTCGTCTCTCCGCTCGCCTCACCGTGATTC 61
Query 71 TGTTTCGCCGCCGTCTATCTCCCAATTCCGTGACCGTTG-TTGTTTAGTGAATCGATGAT 129
||||||||| |||| |||||||||||| || | || || | || || | ||||||
Sbjct 62 TGTTTCGCCACCGTGTATCTCCCAATT-TGTTATCG-TGACCG-TT-GT---TTGATGAT 114
Query 130 TTACACTGCTATCGACAATTTTTACCTATCCGACGAGCAGCTGAAGGCTTCACCTTCGAG 189
||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||| ||
Sbjct 115 TTACACTGCAATCGACAATTTCTACCTAACCGACGAGCAGCTGAAGGCTTCACCTTCCAG 174
Query 190 GAAAGATGGGATAGATGAAACA-ACTGAAATCTCTCTTAGAATCTATGGATGTGATCTCA 248
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct 175 GAAAGATGGGATAGATGAAA-ATACTGAAATCTCTCTTAGAATCTATGGATGTGATCTTA 233
Query 249 TCCAAGAGGGTGGAATATTGCTCAAACTACCACAGGCAGTTATGGCTACTGGGCAGGTTC 308
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 234 TCCAAGAGGGTGGCATATTGCTCAAACTACCACAGGCGGTTATGGCTACTGGGCAGGTTC 293
Query 309 TGTTTCAGCGATTCTATTGCAAGAAGTCTTTGGCTAAATTTGATGTCAAGATAGTTGCTG 368
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 294 TGTTTCACCGATTCTATTGCAAGAAGTCTTTGGCTAAATTTGATGTAAAGATAGTTGCTG 353
Query 369 CCAGCTGTGTATGGCTTGCATCAAAACTGGAAGAAAACCCTAAAAAAGCTAGACAGGTCA 428
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 CGAGCTGTGTCTGGCTTGCATCAAAACTGGAAGAAAACCCTAAAAAAGCTAGACAGGTCA 413
Query 429 TCATCGTATTCCACAGGATGGAGTGTCGCAGGGAGAACTTGCCATTAGAACATCTGGATA 488
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 414 TCATCGTATTCCACAGGATGGAGTGTCGCAGGGAGAACTTACCATTAGAACATCTCGATA 473
Query 489 TGTATGCCAAGAAGTTCTCTGAGTTGAAAGTTGAATTAAGCAGAACTGAGAGACATATAC 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TGTATGCCAAGAAGTTCTCTGAGTTGAAAGTTGAATTAAGCAGAACTGAGAGACATATAC 533
Query 549 TGAAAGAGATGGGTTTTGTTTGTCATGTTGAACATCCTCACAAGTTCATATCAAACTACC 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TGAAAGAGATGGGTTTTGTTTGTCATGTTGAACATCCTCACAAGTTCATATCAAACTACC 593
Query 609 TTGCCACATTAGAAACACCTCCAGAATTGAGGCAAGAAGCTTGGAATTTGGCCAATGATA 668
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 594 TTGCCACACTAGAAACACCTCCAGAATTGAGGCAAGAAGCTTGGAATTTGGCTAATGATA 653
Query 669 GTCTGCGTACAACCCTCTGTGTAAGGTTCAGAAGTGAGGTTGTGGCTTGTGGGGTAGTGT 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 654 GTCTGCGTACAACCCTCTGTGTAAGGTTCAGAAGTGAGGTTGTGGCTTGTGGGGTCGTGT 713
Query 729 ATGCTGCTGCCCGTAGGTTTCAAGTACCACTCCCTGAGAATCCGCCGTGGTGGAAAGCAT 788
|||||||||||||||||||||||||||| || || |||||||| || |||||||||||||
Sbjct 714 ATGCTGCTGCCCGTAGGTTTCAAGTACCTCTTCCAGAGAATCCACCCTGGTGGAAAGCAT 773
Query 789 TTGATGCAGATAAATCTAGTATTGACGAAGTGTGTAGAGTTCTTGCTCATTTATACAGTC 848
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 774 TTGATGCAGATAAATCTAGTATTGACGAAGTGTGTAGAGTTCTTGCTCACTTATACAGTC 833
Query 849 TTCCAAAGGCTCAGTATATCTCTGTTTGCAAGGATGGGAAGCCATTTACATTTTCTAGCA 908
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 834 TTCCAAAGGCTCAGTATATCTCTGTTTGCAAGGATGGGAAGCCATTTACCTTTTCCAGCA 893
Query 909 GATCCGGGAATTCTCAAGGTCAATCAGCGACAAAGGATCTGTTGCCGGGAGCAGGCGAGG 968
|||| ||||||||||||| ||||||||| ||||||||| |||||||||||| ||| ||||
Sbjct 894 GATCTGGGAATTCTCAAGCTCAATCAGCTACAAAGGATGTGTTGCCGGGAGTAGGGGAGG 953
Query 969 CTGTTGATACTAAA-TGTACTGCAGGATCAGCTAATAACGACTTGAAGGATGGAATGGTT 1027
|||||||||| ||| ||| || ||||||||||||||||||||| ||||||||||||||||
Sbjct 954 CTGTTGATAC-AAAGTGTGCTCCAGGATCAGCTAATAACGACTCGAAGGATGGAATGGTT 1012
Query 1028 ACTACACCACACGAAAAGGCTACAGATTCCAAGAAAAGTGGTACCGAGTCAAACT-CTCA 1086
| | | || |||| ||||| ||||||||| ||||| || | ||| ||||||||| | ||
Sbjct 1013 ATTTCGCCTCACGCAAAGGGTACAGATTCAAAGAAGAGCGATACTGAGTCAAACAGC-CA 1071
Query 1087 GCCAATTGTAGGAGACTCAAGCTATg-aaagaagtaaagtaggagatagagaaagagaga 1145
|||||| ||||||||||| || | | ||| ||||||||| ||||| |||||||||||||
Sbjct 1072 GCCAATAGTAGGAGACTCGAGGAACGGAAA-AAGTAAAGTTGGAGAGAGAGAAAGAGAGA 1130
Query 1146 gtgatagagagaaggaacgaggtagagagagGGACAGGGGTAGGTCTCACAGAGGCAGAG 1205
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1131 GTGGTAGAGAGAAGGAACGAGGTAGAGAGAGGGACAGGGCTAGGTCTCACAGAGGCAGAG 1190
Query 1206 ATTCTGACAGAG-ACAGTGATAGGGAGAGAGACAAACTCAAAGATCGAAGTCATCATCGG 1264
||||||||| || | |||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 1191 ATTCTGACA-AGGAGAGTGATAGGGAGAGAGACAACCTCAAAGATCGGAGTCATCACCGG 1249
Query 1265 TCAAGAGACAGATTGAAGGATTCAGGTGGACATTCAGATAAATCAAGGCATCATTCTTCT 1324
|||||||| |||||||||||||||| | | |||| |||| ||||| ||||||
Sbjct 1250 TCAAGAGATAGATTGAAGGATTCAG----A--T--AGAT----CAAGACATCACTCTTCT 1297
Query 1325 CGGGACCGTGACTACCGCGA--C-TC--A-TCG--AAA-GACCGTCGTAGGCACCATTAA 1375
|||||||||||||| || || | || | || ||| |||||||||||||||||||||
Sbjct 1298 CGGGACCGTGACTATCGAGAATCCTCCCACTCATCAAAAGACCGTCGTAGGCACCATTAA 1357
Query 1376 GCCAATCTTCTTGTCATCTACATCCCCTTGAGCCTACTTGATGTTAA-GACAGTATAGTG 1434
|||||||||||||||| ||||||| ||||||| ||||||||||||| ||||||||| ||
Sbjct 1358 GCCAATCTTCTTGTCA-CTACATCACCTTGAGTGTACTTGATGTTAAAGACAGTATATTG 1416
Query 1435 TTGTATTGTGTTAA-GAGTCAAAA-CCCATGTGTACTTAATCACATGCTAAGATCACGTT 1492
|||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1417 TTGTATTGTGTTAAAGAGTCAAAAACCCATGTGTACTCAATCACATGCTAAGATCACGTT 1476
Query 1493 GGTTCGACATATAAAATCGAGAAAG-TCTGATATGTTTCTAATTTGGAATTTT 1544
|||||||||||||||||||| |||| |||||| | || ||||||||| |||||
Sbjct 1477 GGTTCGACATATAAAATCGA-AAAGGTCTGATCT-TT-CTAATTTGGTATTTT 1526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59535052935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5