BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26440.1
Length=1754
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481501 jgi|Araly1|481501|fgenesh2_kg.4__561__AT2G26440.1 2300 0.0
> Ahg481501 jgi|Araly1|481501|fgenesh2_kg.4__561__AT2G26440.1
Length=1640
Score = 2300 bits (1245), Expect = 0.0
Identities = 1468/1577 (93%), Gaps = 10/1577 (1%)
Strand=Plus/Plus
Query 108 TTCTCTAAACCCTCATGAAACTTCTGCT-ACAAGTTTCTGCAAAAACACACCATATCCAG 166
||||||||| ||| || |||| ||| || ||||||||||||| |||||||||||||||
Sbjct 69 TTCTCTAAAACCTAATCAAACCTCT-CTAACAAGTTTCTGCATGAACACACCATATCCAA 127
Query 167 ATGCATGTTT-TACCTCCTTAAAACTATCCATCTCCATCAACATAAGCCCCAACATTCTC 225
|||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 128 ATGCATGTTTCGA-CTCCTTAAAACTTTCCATCTCCATCAACATAAGCCCCAACATTCTC 186
Query 226 TCTTTCCTCCTCCAAACCCTCCAAACAGCTCTTTCCGAGGCTGGGAAACTCACCGATCTC 285
||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 187 TCTTTCCTCCTTCAAACCCTCCAAACAGCTCTTTCCGAGGCCGGAAAACTCACCGATCTT 246
Query 286 CTTTCTGGCGCTGGGGTCTCCAACAACCTAGTTGAGGGACAACGTGGCTCTCTTCAAGAC 345
||||| || ||||| ||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 247 CTTTCCGGAGCTGGAATCTCCAACAACCTCGTTGAGGGGCAACGTGGCTCTCTTCAAGAC 306
Query 346 TGCAAAGATCTTCACCACATCACTTCTTCTTTCTTGAAACGATCAATCTCCAAGATCCAA 405
||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 307 TGCAAAGATCTTCACCAGATCACTTCTTCCTTCTTAAAACGATCCATCTCCAAGATCCAA 366
Query 406 GACGGTGTTAACGATTCACGGAAA-CTAGCCGACGCTAGAGCGTACCTAAGCGCCGCTCT 464
||||||||||||||||||| |||| ||||| ||||||||||||||||| |||||||||||
Sbjct 367 GACGGTGTTAACGATTCAC-GAAAGCTAGCTGACGCTAGAGCGTACCTGAGCGCCGCTCT 425
Query 465 CACCAACAAGATCACATGCTTGGAAGGTCTTGAAT-CAGCCTCAGGTCCACTCAAGCCAA 523
||||||||||||||| |||||||||||||||| || ||||||| ||||| || |||||||
Sbjct 426 CACCAACAAGATCACTTGCTTGGAAGGTCTTG-ATACAGCCTCTGGTCCTCTAAAGCCAA 484
Query 524 AGCTCGTGACCTCCTTCAC-GACCACTTACAAACACATAAGCAACTCCCTCTCTGCTCTT 582
||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||
Sbjct 485 AGCTCGTGACCTCCTTCACGGA-AACTTACAAACACGTAAGCAACTCCCTCTCTGCTCTA 543
Query 583 CCAAAACAGAGAAGAACCACAAATCCAAAAACCGGCGGAAACACTAAGAACCGCCGGTTA 642
||||||||| ||||| ||||||||| ||||||| ||| || ||||||||||||||||||
Sbjct 544 CCAAAACAGGGAAGAGCCACAAATCTGAAAACCGACGGCAAGACTAAGAACCGCCGGTTA 603
Query 643 CTTGGGTTATTTCCTGACTGGGTCTATAAGAAAGATCACCGGTTTTTAGAAGATTCTAGC 702
|||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 604 TTTGGGTTATTACCTGACTGGGTCTCTAAGAAAGATCACCGGTTTTTAGAGGATTCTAGT 663
Query 703 GACGGGTATGATGAGTATGACCCGAGTGAGAGCCTCGTGGTCGCTGCCGATGGAACAGGG 762
||||||||||||||||| ||||||||||||| | ||||||| ||||||||||||||||||
Sbjct 664 GACGGGTATGATGAGTACGACCCGAGTGAGATCATCGTGGTTGCTGCCGATGGAACAGGG 723
Query 763 AATTTTTCGACTATTAACGAGGCCATAAGCTTTGCTCCTAATATGAGTAACGACAGGGTG 822
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 724 AATTTTTCGACCATTAACGAGGCCATAAGCTTTGCTCCGGATATGAGTAACGACAGGGTA 783
Query 823 CTGATATATGTAAAGGAAGGTGTGTATGACGAGAACATTGATATTCCGATCTACAAGACT 882
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 784 CTGATATATGTAAGGGAAGGTGTGTATGACGAGAACATTGAGATTCCGATCTACAAGACT 843
Query 883 AATATTGTTTTGATAGGAGATGGATCCGATGTTACATTTATTACCGGAAACCGAAGTGTC 942
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 AATATTGTTCTGATCGGAGATGGATCCGATGTTACATTTATTACCGGAAACCGAAGTGTA 903
Query 943 GGAGATGGATGGACCACTTTCCGATCTGCTACTCTTGCGGTTTCCGGCGAAGGATTCTTG 1002
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 904 GGAGATGGATGGACCACTTTCCGATCTGCTACTCTTGCGGTTTCGGGCGAAGGATTCTTG 963
Query 1003 GCGAGGGATATAATGATAACAAACACAGCAGGACCCGAGAAGCACCAAGCGGTTGCACTA 1062
|||||||| || |||||||| |||||||| |||||||||||||| ||||||||||| ||
Sbjct 964 GCGAGGGACATGATGATAACGAACACAGCGGGACCCGAGAAGCATCAAGCGGTTGCGTTA 1023
Query 1063 CGAGTGAACGCGGATTTTGTGGCCTTATACCGATGTGTCATTGATGGTTACCAGGACACA 1122
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1024 CGTGTGAACGCGGATTTTGTGGCCTTATATCGATGTGTCATTGATGGTTACCAGGACACA 1083
Query 1123 CTTTACACCCACTCATTCCGACAATTCTACCGTGAATGCGATATTTATGGAACCATTGAT 1182
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1084 CTTTACACCCACTCATTCCGACAATTCTACCGCGAATGCGATATTTATGGAACCATTGAT 1143
Query 1183 TATATCTTTGGAAACGCAGCCGTTGTCTTCCAAGGCTGTAACATCGTTTCAAAGTTGCCT 1242
||||||||||| ||||| ||||| |||||||| || || |||||||||||||||||||||
Sbjct 1144 TATATCTTTGGGAACGCGGCCGTGGTCTTCCAGGGATGCAACATCGTTTCAAAGTTGCCT 1203
Query 1243 ATGCCAGGACAATTCACGGTAATTACTGCTCAGTCACGAGACACTCAGGACGAAGATACC 1302
||||||||||||||||| ||| | |||||||| ||||| |||| || |||||||| |||
Sbjct 1204 ATGCCAGGACAATTCACTGTAGTAACTGCTCAATCACGGGACAGTCCCGACGAAGACACC 1263
Query 1303 GGGATCTCGATGCAAAACTGCTCCATCCTTGCGTCGGAGGATTTATTTAATAGCTCAAAT 1362
|||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||
Sbjct 1264 GGGATCTCGATGCAAAACTGCTCCATTCTTGCATCGGATGATTTATTTAACAGCTCAAAT 1323
Query 1363 AAAGTGAAGAGCTACTTGGGACGTCCGTGGAGAGAATTTTCAAGAACAGTTGTAATGGAA 1422
| ||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 1324 AGAGTAAAGAGCTACTTGGGACGTCCGTGGAGAGGATTTTCAAGAACAGTTCTAATGGAA 1383
Query 1423 TCTTATATTGATGAGTTTATTGACGGTTCGGGTTGGAGCAAATGGAACGGTGGGGAAGCA 1482
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1384 TCTTATATTGATGAGTTTATTGACGGTTCGGGTTGGAGCAAATGGAACGGTAGGGAAGGA 1443
Query 1483 CTTGATACCCTTTACTATGGCGAGTATAACAATAACGGTCCGGGTTCTGAAACGGTTAAA 1542
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1444 CTTGATACCCTTTACTATGGCGAGTATAACAATAACGGGCCGGGTTCTGAAACGGGTAAA 1503
Query 1543 CGGGTTAACTGGCCGGGTTTTCACATTATGGGTTACGAAGATGCCTTTAACTTCACGGCA 1602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 CGGGTTAACTGGCCGGGTTTTCACATTATGGGTTACGAAGATGCCTTTAACTTCACGGCA 1563
Query 1603 ACAGAGTTTATCACTGGTGATGGTTGGTTGGGAAGTACTTCGTTCCCTTATGATAATGGA 1662
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1564 ACAGAGTTTATCACCGGTGATGGTTGGTTGGGTAGTACTTCGTTCCCTTATGATAATGGA 1623
Query 1663 ATTTAACAttttttttt 1679
|||||||| |||||||
Sbjct 1624 ATTTAACAACTTTTTTT 1640
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65819943360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5