BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26450.1
Length=2170
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320434 jgi|Araly1|320434|fgenesh1_pm.C_scaffold_4000491 2612 0.0
> Ahg320434 jgi|Araly1|320434|fgenesh1_pm.C_scaffold_4000491
Length=1860
Score = 2612 bits (1414), Expect = 0.0
Identities = 1730/1876 (92%), Gaps = 47/1876 (3%)
Strand=Plus/Plus
Query 160 ATGGCGTTTCAGGATTTTGACAAGATCCAAGAACGTGTAAACGCCAATAGGAAACGTAAA 219
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGTTTCAGGATTTCGACAAGATCCAAGAACGTGTAAACGCCAATAGGAAACGTAAA 60
Query 220 TTCAGGAAGAGGATCATCGTTGGAACGGTCTCTTTGCTTGTGGTTGTTGCTGCCATTGTT 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCAGGAAGAGGATCATCGTTGGAACGGTCTCTTTGCTTGTGGTTGTTGCTGCCATTGTT 120
Query 280 GGAGGAGCTTTTGCTTATGTTGCTTATGAGAAAAGAAATGaacaacaacaacaacaacaa 339
|||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 GGAGGAGCTTTTGCTTATGTTGCTTATGAGAAAAGAAATG------------AACAACAA 168
Query 340 caagcaaagaaccacaacaaaagcggtagcggcaacaacGTC---G-T-----C---AAG 387
||||| |||| ||||||||||||||||||||||||||||||| | | | |||
Sbjct 169 CAAGCGAAGAGCCACAACAAAAGCGGTAGCGGCAACAACGTCAAGGATAGCGACAAGAAG 228
Query 388 -G--ATAG-CGA-CAAG-AAGAG-CC--C------GAGCCCACCAACCCCGAGCCAAAAA 432
| | || | | |||| |||| || | ||||||||||| | |||||||||||
Sbjct 229 AGCCAGAGCCCACCAAGCCAGAGCCCATCAAGTAAGAGCCCACCAAGCACGAGCCAAAAA 288
Query 433 GCGCCCGTTTCCGCAGCGCAGTCAGTGAAACCCGGTCAGGGTGATAAGATTATCCAAACT 492
|| || ||||||||||| ||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 289 GCTCCAGTTTCCGCAGCTCAGTCAGCAAAACCTGGTCAGGGTGACAAGATTATCCAAACA 348
Query 493 CTCTGCAGTTCAACGCTTTACATGCAAATCTGCGAGAAAACGCTCAAAAACAGAACAGAC 552
||||| ||||||||||||||| || | ||||||| ||||||||||||||||||||||
Sbjct 349 ATCTGCGGTTCAACGCTTTACAAGCGAGCCTGCGAGGAAACGCTCAAAAACAGAACAGAG 408
Query 553 AAGGGTTTTGCTTTGGACAATCCGACGACCTTTTTGAAGTCTGCCATTGAAGCTGTCAAT 612
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 409 AAGGGTTTTGCTTTGGCCAATCCGACGAGCTTTTTGAAGTCTGCCATTGAAGCTGTCAAT 468
Query 613 GAAGATCTTGACCTTGTTTTAGAGAAGGTCTTGAGTCTCAAGACTGAAAACCAGGATGAT 672
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 GAAGATCTTGACCGAGTTTTAGAGAAGGTCTTGAGTCTCAAGACTGAAAACCAGGATGAT 528
Query 673 AAAGATGCGATCG-AGCAATGTAAGTTGCTTGTCGAAGACGCAAAGGAGGAAACCGTCGC 731
| ||||||||| | | ||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 529 AGAGATGCGATTGCA-CAATGTAAGTTGCTTGTGGAAGACGCAAAGGAGGAAACCGCCGC 587
Query 732 GTCGCTGAACAAAATCAAC-GTCACAGAAGTCAACAGCTTCGAAAAAGTAGTTCCTGACC 790
|||||||||||||||||| || ||||||||||| ||||||| ||| |||||||||||||
Sbjct 588 ATCGCTGAACAAAATCAACGGT-ACAGAAGTCAATAGCTTCGCAAAGGTAGTTCCTGACC 646
Query 791 TGGAAAGTTGGCTAAGCGCGGTCATGTCTTATCAGGAGACATGCCTTGACGGGTTTGAAG 850
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 647 TGGAAAGTTGGCTAAGCGCGGTCATGTCTTACCAGGAGACATGCCTTGACGGGTTTGAAG 706
Query 851 AAGGGAACTTAAAATCTGAAGTGAAGACGAGCGTCAATTCTTCTCAAGTTCTGACCAGCA 910
|||||| |||||||||||||||||||| ||||||||||||||| || |||||||| ||||
Sbjct 707 AAGGGACCTTAAAATCTGAAGTGAAGAAGAGCGTCAATTCTTCACAGGTTCTGACGAGCA 766
Query 911 ATTCCCTCGCGTTGATCAAAACATTT-ACCGAGAATCTCTCTCCGGTAATGAAGGTCGTA 969
||||||| ||| |||||| | | ||| | || |||||||||||| || |||||||||| |
Sbjct 767 ATTCCCTTGCGATGATCACATCCTTTGA-CGTGAATCTCTCTCCAGTTATGAAGGTCGCA 825
Query 970 GA-ACGACATCTTCTTGATGACATCCCGTCTTGGGTAAGCAACGATGATAGAAGAATGTT 1028
| |||||||||||||||||| || |||||||||||||||||||| ||| ||||||||||
Sbjct 826 -ACACGACATCTTCTTGATGATATTCCGTCTTGGGTAAGCAACGAGGATCGAAGAATGTT 884
Query 1029 AAGGGCTGTTGATGTGAAGGCTTTGAAGCCAAACGCAACTGTGGCCAAAGATGGCAGTGG 1088
|||||||||||||||||||||||||||||| || || ||||| || ||||||||||||||
Sbjct 885 AAGGGCTGTTGATGTGAAGGCTTTGAAGCCTAATGCCACTGTAGCTAAAGATGGCAGTGG 944
Query 1089 GGATTTCACAACCATTAATGATGCGCTGAGAGCAATGCCTGAGAAATATGAGGGAAGGTA 1148
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 945 AAATTTCACGACCATTAATGATGCTCTGAGAGCAATGCCTGAGAAATATGAGGGAAGGTA 1004
Query 1149 CATTATCTACGTCAAACAAGGCATTTATGACGAATATGTGACCGTTGATAAGAAGAAGGC 1208
||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||
Sbjct 1005 CATTATCTACGTCAAACAAGGCATTTATGACGAATCTGTGACTGTCGATAAGAAGAAGGC 1064
Query 1209 GAATCTCACTATGGTCGGAGATGGATCACAGAAGACAATTGTGACCGGTAACAAAAGCCA 1268
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1065 GAATCTCACTATGGTCGGAGATGGATCACAAAAGACAATTGTGACCGGAAACAAAAGCCA 1124
Query 1269 TGCAAAGAAAATCCGCACTTTTCTCACGGCAACGTTCGTTGCACAGGGAGAAGGGTTCAT 1328
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1125 CGCAAAGAAAATCCGCACTTTTCTCACGGCAACGTTCGTTGCACAGGGAGAAGGGTTTAT 1184
Query 1329 GGCACAGTCAATGGGGTTCCGGAACACGGCTGGGCCAGAGGGACATCAAGCAGTCGCAAT 1388
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1185 GGCACAGTCAATGGGGTTCCGGAACACGGCTGGGCCAGAAGGACATCAAGCAGTTGCAAT 1244
Query 1389 ACGTGTCCAATCCGATCGATCAATTTTCCTCAACTGCCGATTTGAAGGTTACCAAGACAC 1448
|||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1245 ACGTGTCCAATCCGATAGATCAATTTTCCTAAACTGCCGATTTGAAGGATACCAAGACAC 1304
Query 1449 ATTGTATGCTTACACGCACCGTCAATACTACAGAAGTTGTGTGATAGTTGGAACAATCGA 1508
|||||| |||||||| |||||||| ||||||||||| ||||||||||| || ||||||||
Sbjct 1305 ATTGTACGCTTACACACACCGTCAGTACTACAGAAGCTGTGTGATAGTCGGTACAATCGA 1364
Query 1509 CTTCATATTCGGAGATGCAGCCGCCATCTTCCAGAACTGTAACATCTTCATCAGAAAAGG 1568
|||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||
Sbjct 1365 CTTCATATTCGGAGATGCGGCTGCCATCTTCCAGAACTGTAACATCTTCATCCGAAAAGG 1424
Query 1569 CTTACCAGGACAAAAGAACACGGTGACCGCTCAAGGTCGTGTTGACAAGTTTCAGACGAC 1628
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1425 CTTACCAGGACAAAAGAACACCGTGACCGCTCAAGGACGTGTTGACAAGTTTCAGACGAC 1484
Query 1629 TGGTTTCGTAGTACACAATTGTAAAATCGCTGCAAATGAAGACCTTAAGCCAGTAAAGGA 1688
||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 TGGTTTCGTGGTCCATAATTGTAAAATCGCTGCAAATGAAGACCTTAAGCCAGTAAAGGA 1544
Query 1689 AGAGTACAAGAGCTACCTCGGGCGACCGTGGAAGAACTACTCTCGAACGATCATAATGGA 1748
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1545 AGAGTACAAGAGCTACCTCGGGAGACCGTGGAAGAACTACTCTCGAACGATCATAATGGA 1604
Query 1749 ATCTAAAATCGAGAATGTGATTGACCCTGTTGGATGGTTGAGATGGCAAGAGACGGATTT 1808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1605 ATCTAAAATCGAGAATGTGATTGACCCTGTTGGATGGTTGAGATGGCAAGAGACGGATTT 1664
Query 1809 CGCGATAGACACGTTGTACTACGCGGAGTACAATAACAAAGGATCAAGTGGAGATACAAC 1868
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 TGCGATAGACACACTCTACTACGCGGAGTACAATAACAAAGGATCAAGTGGAGATACAAC 1724
Query 1869 TTCAAGAGTTAAATGGCCTGGATTTAAGGTCATAAACAAGGAGGAGGCTTTGAACTATAC 1928
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1725 TTCAAGAGTTAAATGGCCTGGATTTAAGGTCATAAACAAGGAGGAGGCTTTGAACTTTAC 1784
Query 1929 TGTTGGACCCTTCTTACAAGGAGATTGGATCAGTGCCTCAGGCTCTCCCGTTAAGTTGGG 1988
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1785 AGTTGGGCCCTTCTTACAAGGAGATTGGATCAGTGCCTCAGGTTCTCCCGTTAAGTTGGG 1844
Query 1989 TCTTTATGATGCTTGA 2004
||||||||||||||||
Sbjct 1845 TCTTTATGATGCTTGA 1860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81665485280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5