BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26455.1
Length=1231
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932913 jgi|Araly1|932913|scaffold_400901.1 662 0.0
Ahg938278 jgi|Araly1|938278|scaffold_502469.1 521 4e-147
Ahg922479 jgi|Araly1|922479|scaffold_103760.1 473 1e-132
Ahg925203 jgi|Araly1|925203|scaffold_200764.1 459 3e-128
Ahg952076 jgi|Araly1|952076|scaffold_35500001.1 444 8e-124
Ahg946986 jgi|Araly1|946986|scaffold_703215.1 442 3e-123
Ahg891370 jgi|Araly1|891370|Al_scaffold_0007_3356 396 2e-109
Ahg887317 jgi|Araly1|887317|Al_scaffold_1046_1 372 4e-102
Ahg924918 jgi|Araly1|924918|scaffold_200479.1 348 7e-95
Ahg908029 jgi|Araly1|908029|Al_scaffold_0002_1110 198 7e-50
> Ahg932913 jgi|Araly1|932913|scaffold_400901.1
Length=880
Score = 662 bits (358), Expect = 0.0
Identities = 420/450 (93%), Gaps = 3/450 (1%)
Strand=Plus/Plus
Query 560 CTGCTAAGTTACAAGACAACATTCTCTCAATCAAATGCCCTGTTTCTGGTTGCTCGGGGC 619
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 334 CTGCTAAGTTACAAGACAACATCCTCTCAATCAAATGCCCTGTTTCTGGTTGCTCGGGGC 393
Query 620 AGCTCGAGCCCGATAAATGCGGTCAAATCCTGCCAAGAGAAGTCTTTGATCGGTGGGGAG 679
|||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 394 AGCTCGGGCCCGATAAATGCCGACAAATCCTGCCAAGAGAAGTCTTTGATCGGTGGGGAG 453
Query 680 ACGCTCTTTGCGAGGCGGTGATTATGAGTTCAAAGAGATTCTATTGTCCTTATAAGGATT 739
| |||||||| ||||||||||||||| |||||||||||||||| ||||| ||||||||||
Sbjct 454 ATGCTCTTTGTGAGGCGGTGATTATGGGTTCAAAGAGATTCTACTGTCCATATAAGGATT 513
Query 740 GCTCTGCTTTGCTCTTCTTGGACGAGAGTGAAGAAGAGAAGATGAATGTATCGGAGTGTC 799
||||||||||||||||||||||||||||||||| || | ||||| | |||||||||||
Sbjct 514 GCTCTGCTTTGCTCTTCTTGGACGAGAGTGAAGT-GA-A-GATGACGGAATCGGAGTGTC 570
Query 800 CTCATTGCCATAGAATGGTGAGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACAT 859
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||| || |
Sbjct 571 CTCATTGCCATAGAATGGTGTGTGTAGAGTGTGGAACTAAGTGGCATCCGGAGATTACTT 630
Query 860 GCGAGGAGTTTCAAAAGCTAGCCGAGAACGAAAGAGAAAGAGGGGATATATTGTTGAAGA 919
|| | || ||||| |||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 631 GCCAAGATTTTCAGAAGCTAGCCGAGAACGAAAGAGAACGAGGTGATATATTGTTGAAGA 690
Query 920 ATATGGCAGAGAGTAAGAAGTGGAGAAGATGTCCTTCTTGCAAATTCTACATTGAAAAAT 979
|||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 691 ATATGGCAGAGAGTAACAAGTGGAAAAGATGTCCTTCTTGCAAATTTTACATTGAAAAAT 750
Query 980 CTGAGGGTTGCTTATACATGAAGTGCAGGT 1009
||||||||||||||||||||| ||||||||
Sbjct 751 CTGAGGGTTGCTTATACATGATGTGCAGGT 780
Score = 209 bits (113), Expect = 3e-53
Identities = 252/311 (81%), Gaps = 41/311 (13%)
Strand=Plus/Plus
Query 155 aaaaccctaatcagaaaaaTGGCCACAGATTCCATGAATGCAGCCACCGTCAAT------ 208
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 3 AAAACCCTAATCAGAAAAATGGCCACAGAGTCCATGAATGCAGCCACCGTCAATGACGAC 62
Query 209 ---G------ACTCCGACCGTTTCATCTTCTCCACACCTCTCTCC-GCTCGTGGTTCAAC 258
| |||||||||||||||||||||| |||||||||||| | | |||||||||
Sbjct 63 GGCGACAACAACTCCGACCGTTTCATCTTCTCAACACCTCTCTCCAG-TTATGGTTCAAC 121
Query 259 CAAACGTGACGCCATCTCCGTCGAGGA-T-----C-T--TGGCCA-----A--------T 296
||||||||||||||||||||||||||| | | | | |||| | |
Sbjct 122 CAAACGTGACGCCATCTCCGTCGAGGATTACGACCGTGATCGCCACCTTTATCGTCGGTT 181
Query 297 ACACTCTTCTCAAACTCCATTCAAATCCGGTTTCACAAAC-TACATAGATCTTGGCCAAT 355
|||||| |||||||||||| |||||||| ||| ||||| || |||||||||| ||||
Sbjct 182 TCACTCTCCTCAAACTCCATACAAATCCGAATTCTCAAACTTA-ATAGATCTTGATCAAT 240
Query 356 ACAACGACGAAGATGACGATGTAAGAATCCTCTGTTTCACACCAATCTCCATAGAAAAGG 415
||||||||||||| || ||| | ||| |||||||||||||||||||||||||||||||||
Sbjct 241 ACAACGACGAAGACGATGATCTTAGAGTCCTCTGTTTCACACCAATCTCCATAGAAAAGG 300
Query 416 GACAGTCCTCT 426
|||||||||||
Sbjct 301 GACAGTCCTCT 311
Score = 75.0 bits (40), Expect = 1e-12
Identities = 44/46 (96%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 1073 AGGTGTGGATTGGCTTTTTGCTACAATTGTGGAACTCCATCAAAGG 1118
||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 777 AGGTGTGGATTGGCTTTTTGCTACAATTGTGAAACTCCATCCAAGG 822
> Ahg938278 jgi|Araly1|938278|scaffold_502469.1
Length=1009
Score = 521 bits (282), Expect = 4e-147
Identities = 473/563 (84%), Gaps = 22/563 (4%)
Strand=Plus/Plus
Query 455 CTTTCGACTGCGAGATATGTGTTG-AACGAAAA-CCAAGGATTGAATCTTTTCGAATCAA 512
|||||||||| ||||||||||||| ||| |||| || | |||||||| ||||| |||
Sbjct 364 CTTTCGACTGTGAGATATGTGTTGAAAC-AAAATCC-ATAATTGAATCGTTTCGTATCGG 421
Query 513 TGGCTGTTCTCACACT-TATTGCAACGATTGTGTCTCAAAATATATAGCTGCTAAGTTAC 571
||| || |||||| | || ||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 422 TGGATGCTCTCAC-TTCTACTGCAACGATTGTGTCTCGAAATATATAGCAGCTAAATTAC 480
Query 572 AAGACAACATTCTCTCAATCAAATGCCCTGTTTCTGGTTGCTCGGGGCAGCTCGAGCCCG 631
|||||||||||||||| ||| | || ||||| ||||||||||| || | ||||||||| |
Sbjct 481 AAGACAACATTCTCTCGATCGAGTGTCCTGTCTCTGGTTGCTCTGGTCGGCTCGAGCCTG 540
Query 632 ATAAATG-CGGTCAAATCCTGCCAAGAGAAGTCTTTGATCGGTGGGGAGACGCTCTT-TG 689
|| | || | |||||||| ||||||| || || |||||||||||||| || ||| || ||
Sbjct 541 ATCAGTGTC-GTCAAATCTTGCCAAGGGAGGTTTTTGATCGGTGGGGTGATGCT-TTGTG 598
Query 690 CGAGGCGGTGA-TTATGAGTTCAAAGAGATTCTATTGTCCTTATAAGGATTGCTCTGCTT 748
|| || || | | ||| |||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 599 TGAAGCAGT-AGTGATGCGTTCGAAGAGATTCTACTGTCCTTACAAGGATTGCTCTGCTT 657
Query 749 TGCTCTTCTTGGACGAGAGTGAAGAAGAGAAGATGAATGTA-TCGGAGTGTCCTCATTGC 807
|||| ||| ||||||||||| | | || |||||| | | || |||||||||||||||
Sbjct 658 TGCTTTTCATGGACGAGAGT---G-A-AG-TGATGAAAG-ACTCAGAGTGTCCTCATTGC 710
Query 808 CATAGAATGGTGAGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACATGCGAGGAG 867
|||||||||||| |||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 711 CATAGAATGGTGTGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATGACTTGTGAGGAG 770
Query 868 TTTCAAAAGCTAGCCGAGAACGAAAGAGAAAGAGGGGATATATTG-TTGAAGAATATGGC 926
||||| || ||||| ||||||||||||| ||||| ||||| ||| ||| || |||||
Sbjct 771 TTTCAGAATCTAGCGGAGAACGAAAGAGGAAGAGATGATATTTTGCTTGC-GACGATGGC 829
Query 927 AGAGAGTAAGAAGTGGAGAAGATGTCCTTCTTGCAAATTCTACATTGAAAAATCTGAGGG 986
| ||| ||||| |||| |||||||||||||||||||||||| ||||| || ||| | ||
Sbjct 830 AAAGAAAAAGAAATGGAAAAGATGTCCTTCTTGCAAATTCTATATTGAGAAGTCTCATGG 889
Query 987 TTGCTTATACATGAAGTGCAGGT 1009
|||||||||||||||||||||||
Sbjct 890 TTGCTTATACATGAAGTGCAGGT 912
> Ahg922479 jgi|Araly1|922479|scaffold_103760.1
Length=656
Score = 473 bits (256), Expect = 1e-132
Identities = 431/512 (84%), Gaps = 25/512 (5%)
Strand=Plus/Plus
Query 516 CTGTTCTCACACT-TATTGCAACGATTGTGTCTCAAAATATATAGCTGCTAAGTTACAAG 574
||| |||||| | || ||||||||||||||||| |||||||||||||| || |||||||
Sbjct 108 CTGCTCTCAC-TTCTACTGCAACGATTGTGTCTCGAAATATATAGCTGCAAAATTACAAG 166
Query 575 ACAACATTCTCTCAATCAAATGCCCTGTTTCTGGTT------GCTCGGGGCAGCTCGAGC 628
||||||| ||||||||| | || | ||| ||||||| |||| || | ||||||||
Sbjct 167 ACAACATCCTCTCAATCGAGTGTCTTGTCTCTGGTTGCGAGAGCTCTGGTCGGCTCGAGC 226
Query 629 CCGATAAATG-CGGTCAAATCCTGCCAAGAGAAGTCTTTGATCGGTGGGGAGACGCTCTT 687
| ||||| || | |||||||| |||||||||| || ||||||| |||||| || ||||||
Sbjct 227 CAGATAAGTGTC-GTCAAATCTTGCCAAGAGAGGTTTTTGATCAGTGGGGTGATGCTCTT 285
Query 688 TGC-GAGGCGGTGATT-ATGAGTTCAAAGAGATTCTATTGTCCTTATAAGGATTGCTCTG 745
| | || || || ||| ||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 286 T-CTGAAGCAGT-ATTGATGCGTTCAAAGAGATTATATTGTCCTTATAAGGATTGCTCTG 343
Query 746 CTTTGCTCTTC-TTGGACGAGAGTGAAGAAGAGAAGATGAATGTA-TCGGAGTGTCCTCA 803
||||||| ||| || ||||||||| |||| ||||||||| | | ||||||||| ||||
Sbjct 344 CTTTGCTTTTCATT-GACGAGAGT---GAAGTGAAGATGAAAG-ATTCGGAGTGTTCTCA 398
Query 804 TTGCCATAGAATGGTGAGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACATGCGA 863
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 399 TTGCCATAGAATGGTGTGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACTTGCGA 458
Query 864 GGAGTTTCAAAAGCTAGCCGAGAACGAAAGAGAAAGAGGGGATATATTGTT-GAAGAATA 922
||||||||| |||||||| || |||||||||| ||||| ||||| ||| | | || |
Sbjct 459 GGAGTTTCAGAAGCTAGCAGAAAACGAAAGAGGAAGAGATGATATTTTGCTCGC-GACGA 517
Query 923 TGGCAGAGAGTAAGAAGTGGAGAAGATGTCCTTCTTGCAAA-TTCTACATTGAAAAATCT 981
||||| ||| ||||| |||| ||||||| |||||||||| || || ||||| || |||
Sbjct 518 TGGCAAAGAAAAAGAAATGGAAAAGATGTTATTCTTGCAAACTT-TATATTGAGAAGTCT 576
Query 982 GAGGGTTGCTTATACATGAAGTGCAGGTATCT 1013
||||||||||||||||||||||||||| |||
Sbjct 577 CAGGGTTGCTTATACATGAAGTGCAGGTCTCT 608
> Ahg925203 jgi|Araly1|925203|scaffold_200764.1
Length=710
Score = 459 bits (248), Expect = 3e-128
Identities = 414/491 (84%), Gaps = 23/491 (5%)
Strand=Plus/Plus
Query 532 TGCAACGATTGTGTCTCAAAATATATAGCTGCTAAGTTACAAGACAACATTCTCTCAATC 591
||||||||||||||||| |||||||||||||| || |||||||||||||| |||||||||
Sbjct 82 TGCAACGATTGTGTCTCGAAATATATAGCTGCAAAATTACAAGACAACATCCTCTCAATC 141
Query 592 AAATGCCCTGTTTCTGGTT------GCTCGGGGCAGCTCGAGCCCGATAAATG-CGGTCA 644
| || | ||| ||||||| |||| || | ||||||||| ||||| || | ||||
Sbjct 142 GAGTGTCTTGTCTCTGGTTGCAAGAGCTCTGGTCGGCTCGAGCCAGATAAGTGTC-GTCA 200
Query 645 AATCCTGCCAAGAGAAGTCTTTGATCGGTGGGGA-GACGCTCTTTGC-GAGGCGGTGATT 702
|||| |||||||||| || ||||||| || |||| || ||||||| | || || || |||
Sbjct 201 AATCTTGCCAAGAGAGGTTTTTGATCAGT-GGGATGATGCTCTTT-CTGAAGCAGT-ATT 257
Query 703 -ATGAGTTCAAAGAGATTCTATTGTCCTTATAAGGATTGCTCTGCTTTGCTCTTC-TTGG 760
||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| || |
Sbjct 258 GATGCGTTCAAAGAGATTATATTGTCCTTATAAGGATTGCTCTGCTTTGCTTTTCATT-G 316
Query 761 ACGAGAGTGAAGAAGAGAAGATGAATGTA-TCGGAGTGTCCTCATTGCCATAGAATGGTG 819
|| ||||| |||| ||||||||| | | ||||||||||||||||||||||||||||||
Sbjct 317 ACAAGAGT---GAAGTGAAGATGAAAG-ATTCGGAGTGTCCTCATTGCCATAGAATGGTG 372
Query 820 AGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACATGCGAGGAGTTTCAAAAGCTA 879
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 373 TGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACTTGCGAGGAGTTTCAGAAGCTA 432
Query 880 GCCGAGAACGAAAGAGAAAGAGGGGATATATTGTT-GAAGAATATGGCAGAGAGTAAGAA 938
|| | ||||||||||| ||||| |||| ||| | | || |||||| ||| |||||
Sbjct 433 GCAGGGAACGAAAGAGGAAGAGATAATATTTTGCTCGC-GACGATGGCAAAGAAAAAGAA 491
Query 939 GTGGAGAAGATGTCCTTCTTGCAAATTCTACATTGAAAAATCTGAGGGTTGCTTATACAT 998
|||| ||||||| |||||||||| |||| ||||| || ||| ||||||||||||||||
Sbjct 492 CTGGAAAAGATGTTATTCTTGCAAACTCTATATTGAGAAGTCTCAGGGTTGCTTATACAT 551
Query 999 GAAGTGCAGGT 1009
||| |||||||
Sbjct 552 GAAATGCAGGT 562
> Ahg952076 jgi|Araly1|952076|scaffold_35500001.1
Length=755
Score = 444 bits (240), Expect = 8e-124
Identities = 411/490 (84%), Gaps = 25/490 (5%)
Strand=Plus/Plus
Query 534 CAACGATTGTGTCTCAAAATATATAGCTGCTAAGTTACAAGACAACATTCTCTCAATCAA 593
||||||||||||||| |||||||||||||| || |||||||||||||| ||||||||| |
Sbjct 129 CAACGATTGTGTCTCGAAATATATAGCTGCAAAATTACAAGACAACATCCTCTCAATCGA 188
Query 594 ATGCCCTGTTTCTGGTT------GCTCGGGGCAGCTCGAGCCCGATAAATG-CGGTCAAA 646
|| | ||| ||||||| |||| || | ||||||||| ||||| || | ||||||
Sbjct 189 GTGTCTTGTCTCTGGTTGCAAGAGCTCTGGTCGGCTCGAGCCAGATAAGTGTC-GTCAAA 247
Query 647 TCCTGCCAAGAGAAGTCTTTGATCGGTGGGGA-GACGCTCTTTGC-GAGGCGGTGATT-A 703
|| |||||||||| || ||||||| || |||| || ||||||| | || || || ||| |
Sbjct 248 TCTTGCCAAGAGAGGTTTTTGATCAGT-GGGATGATGCTCTTT-CTGAAGCAGT-ATTGA 304
Query 704 TGAGTTCAAAGAGATTCTATTGTCCTTATAAGGATTGCTCTGCTTTGCTCTTC-TTGGAC 762
|| ||||||||||||| |||||||||||||||||||||||| ||||||| ||| || |||
Sbjct 305 TGCGTTCAAAGAGATTATATTGTCCTTATAAGGATTGCTCTACTTTGCTTTTCATT-GAC 363
Query 763 GAGAGTGAAGAAGAGAAGATGAATGTA-TCGGAGTGTCCTCATTGCCATAGAATGGTGAG 821
||||| |||| ||||||||| | | |||||||||||||||||||||||||||||| |
Sbjct 364 AAGAGT---GAAGTGAAGATGAAAG-ATTCGGAGTGTCCTCATTGCCATAGAATGGTGTG 419
Query 822 TGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACATGCGAGGAGTTTCAAAAGCTAGC 881
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 420 TGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACTTGCGAGGAGTTTCAGAAGCTAGC 479
Query 882 CGAGAACGAAAGAGAAAGAGGGGATATATT-GTT-GAAGAATATGGCAGAGAGTAAGAAG 939
| ||||||||||| ||||| |||| || | | | || |||||| ||| |||||
Sbjct 480 AGGGAACGAAAGAGGAAGAGATAATAT-TTCGCTCGC-GACGATGGCAAAGAAAAAGAAC 537
Query 940 TGGAGAAGATGTCCTTCTTGCAAATTCTACATTGAAAAATCTGAGGGTTGCTTATACATG 999
|||| ||||||| |||||||||| |||| ||||| || ||| |||||||||||||||||
Sbjct 538 TGGAAAAGATGTTATTCTTGCAAACTCTATATTGAGAAGTCTCAGGGTTGCTTATACATG 597
Query 1000 AAGTGCAGGT 1009
|| |||||||
Sbjct 598 AAATGCAGGT 607
> Ahg946986 jgi|Araly1|946986|scaffold_703215.1
Length=941
Score = 442 bits (239), Expect = 3e-123
Identities = 411/491 (84%), Gaps = 23/491 (5%)
Strand=Plus/Plus
Query 532 TGCAACGATTGTGTCTCAAAATATATAGCTGCTAAGTTACAAGACAACATTCTCTCAATC 591
||||||||||||||||| |||||||||||||| || |||||||||||||| |||||||||
Sbjct 130 TGCAACGATTGTGTCTCGAAATATATAGCTGCAAAATTACAAGACAACATCCTCTCAATC 189
Query 592 AAATGCCCTGTTTCTGGTT------GCTCGGGGCAGCTCGAGCCCGATAAATG-CGGTCA 644
| || | ||| ||||||| |||| | | ||||||||| ||||| || | ||||
Sbjct 190 GAGTGTCTTGTCTCTGGTTGCAAGAGCTCTGTTCGGCTCGAGCCAGATAAGTGTC-GTCA 248
Query 645 AATCCTGCCAAGAGAAGTCTTTGATCGGTGGGGA-GACGCTCTTTGC-GAGGCGGTGATT 702
|||| |||||||||| || ||||||| || |||| || ||||||| | || || || |||
Sbjct 249 AATCTTGCCAAGAGAGGTTTTTGATCAGT-GGGATGATGCTCTTT-CTGAAGCAGT-ATT 305
Query 703 -ATGAGTTCAAAGAGATTCTATTGTCCTTATAAGGATTGCTCTGCTTTGCTCTTC-TTGG 760
||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| |||
Sbjct 306 GATGCGTTCAAAGAGATTATATTGTCCTTATAAGGATTGCTCTGCTTTGCTTTTCATTG- 364
Query 761 ACGAGAGTGAAGAAGAGAAGATGAATGTAT-CGGAGTGTCCTCATTGCCATAGAATGGTG 819
|| ||||||||| || | |||||| | || ||||||||||||||| |||||||||||||
Sbjct 365 ACAAGAGTGAAGT-GA-A-GATGAAAG-ATTCGGAGTGTCCTCATTTCCATAGAATGGTG 420
Query 820 AGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACATGCGAGGAGTTTCAAAAGCTA 879
|||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 421 TGTGTAGAGTGTGGGACTAAGTGGCATCCTGAGATAACTTGCGAGGAGTTTCAGAAGCTA 480
Query 880 GCCGAGAACGAAAGAGAAAGAGGGGATATATTGTT-GAAGAATATGGCAGAGAGTAAGAA 938
|| | ||||||||||| ||||| |||| ||| | | || |||||| ||| |||||
Sbjct 481 GCAGGGAACGAAAGAGGAAGAGATAATATTTTGCTCGC-GACGATGGCAAAGAAAAAGAA 539
Query 939 GTGGAGAAGATGTCCTTCTTGCAAATTCTACATTGAAAAATCTGAGGGTTGCTTATACAT 998
|||| ||||||| |||||||||| |||| ||||| || ||| ||||||||||||||||
Sbjct 540 CTGGAAAAGATGTTATTCTTGCAAACTCTATATTGAGAAGTCTCAGGGTTGCTTATACAT 599
Query 999 GAAGTGCAGGT 1009
||| |||||||
Sbjct 600 GAAATGCAGGT 610
> Ahg891370 jgi|Araly1|891370|Al_scaffold_0007_3356
Length=513
Score = 396 bits (214), Expect = 2e-109
Identities = 381/458 (83%), Gaps = 25/458 (5%)
Strand=Plus/Plus
Query 516 CTGTTCTCACACT-TATTGCAACGATTGTGTCTCAAAATATATAGCTGCTAAGTTACAAG 574
||| |||||| | || ||||||||||||||||| |||||||||||||| || |||||||
Sbjct 66 CTGCTCTCAC-TTCTACTGCAACGATTGTGTCTCTAAATATATAGCTGCAAAATTACAAG 124
Query 575 ACAACATTCTCTCAATCAAATGCCCTGTTTCTGGTT------GCTCGGGGCAGCTCGAGC 628
||||||| ||||||||||| || | ||| ||||||| |||| || | ||||||||
Sbjct 125 ACAACATCCTCTCAATCAAGTGTCTTGTCTCTGGTTGCGAGAGCTCTGGTCGGCTCGAGC 184
Query 629 CCGATAAATG-CGGTCAAATCCT-GCCAAGAGAAGTCTTTGATCGGTGGGGAGACGCTCT 686
||||| || | |||| ||| | ||| ||||| || ||||||| |||||| || |||||
Sbjct 185 TAGATAAGTGTC-GTCAGATCTTGGCC-AGAGAGGTTTTTGATCAGTGGGGTGATGCTCT 242
Query 687 TTGC-GAGGCGGTGATT-ATGAGTTCAAAGAGATTCTATTGTCCTTATAAGGATTGCTCT 744
|| | || | || ||| ||| ||||||||| |||||| |||||||||||||||||||||
Sbjct 243 TT-CTGAAGAAGT-ATTGATGCGTTCAAAGAAATTCTACTGTCCTTATAAGGATTGCTCT 300
Query 745 GCTTTGCTCTTC-TTGGACGAGAGTGAAGAAGAGAAGATGAATGTAT-CGGAGTGTCCTC 802
|||||||| ||| ||| |||||||||||| || | |||||| | || | ||||||||||
Sbjct 301 GCTTTGCTTTTCATTG-ACGAGAGTGAAGT-GA-A-GATGAAAG-ATTCAGAGTGTCCTC 355
Query 803 ATTGCCATAGAATGGTGAGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACATGCG 862
||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||
Sbjct 356 ATTGCCATAGAATGGTGTGTGTAGAGTGTGGGACTAAGTGGCATCCAGAGATAACTTGCG 415
Query 863 AGGAGTTTCAAAAGCTAGCCGAGAACGAAAGAGAAAGAGGGGATATATTGTT-GAAGAAT 921
|||||||||| |||||||| ||||||||||||| ||||| ||||| ||| | | ||
Sbjct 416 AGGAGTTTCAGAAGCTAGCGGAGAACGAAAGAGGAAGAGATGATATTTTGCTCGC-GACG 474
Query 922 ATGGCAGAGAGTAAGAAGTGGAGAAGATGTCCTTCTTG 959
|||||| ||| ||||| |||| |||||||||||||||
Sbjct 475 ATGGCAAAGAAAAAGAAATGGAAAAGATGTCCTTCTTG 512
> Ahg887317 jgi|Araly1|887317|Al_scaffold_1046_1
Length=483
Score = 372 bits (201), Expect = 4e-102
Identities = 338/402 (84%), Gaps = 17/402 (4%)
Strand=Plus/Plus
Query 611 GCTCGGGGCAGCTCGAGCCCGATAAATG-CGGTCAAATCCTGCCAAGAGAAGTCTTTGAT 669
|||| || | ||| ||||| ||||| || | |||||||| |||||||||| || ||||||
Sbjct 23 GCTCTGGTCGGCTAGAGCCAGATAAGTGTC-GTCAAATCTTGCCAAGAGAGGTTTTTGAT 81
Query 670 CGGTGGGGA-GACGCTCTTTGC-GAGGCGGTGATT-ATGAGTTCAAAGAGATTCTATTGT 726
| || |||| || ||||||| | || || || ||| ||| ||||||||||||| ||||||
Sbjct 82 CAGT-GGGATGATGCTCTTT-CTGAAGCAGT-ATTGATGCGTTCAAAGAGATTATATTGT 138
Query 727 CCTTATAAGGATTGCTCTGCTTTGCTCTTC-TTGGACGAGAGTGAAGAAGAGAAGATGAA 785
|||||||||||||||||||||||||| ||| || ||| ||||| |||| |||||||||
Sbjct 139 CCTTATAAGGATTGCTCTGCTTTGCTTTTCATT-GACAAGAGT---GAAGTGAAGATGAA 194
Query 786 TGTA-TCGGAGTGTCCTCATTGCCATAGAATGGTGAGTGTAGAGTGTGGGACTAAGTGGC 844
| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 195 AG-ATTCGGAGTGTCCTCATTGCCATAGAATGGTGTGTGTAGAGTGTGGGACTAAGTGGC 253
Query 845 ATCCGGAGATAACATGCGAGGAGTTTCAAAAGCTAGCCGAGAACGAAAGAGAAAGAGGGG 904
||||||||||||| |||||||||||||| |||||||| | ||||||||||| |||||
Sbjct 254 ATCCGGAGATAACTTGCGAGGAGTTTCAGAAGCTAGCAGGGAACGAAAGAGGAAGAGATA 313
Query 905 ATATATTGTT-GAAGAATATGGCAGAGAGTAAGAAGTGGAGAAGATGTCCTTCTTGCAAA 963
|||| ||| | | || |||||| ||| ||||| |||| ||||||| ||||||||||
Sbjct 314 ATATTTTGCTCGC-GACGATGGCAAAGAAAAAGAACTGGAAAAGATGTTATTCTTGCAAA 372
Query 964 TTCTACATTGAAAAATCTGAGGGTTGCTTATACATGAAGTGC 1005
|||| ||||| || ||| | ||||||||||||||||| |||
Sbjct 373 CTCTATATTGAGAAGTCTCAAGGTTGCTTATACATGAAATGC 414
> Ahg924918 jgi|Araly1|924918|scaffold_200479.1
Length=521
Score = 348 bits (188), Expect = 7e-95
Identities = 342/413 (83%), Gaps = 23/413 (6%)
Strand=Plus/Plus
Query 560 CTGCTAAGTTACAAGACAACATTCTCTCAATCAAATGCCCTGTTTCTGGTT------GCT 613
|||| || |||||||||||||| ||||||||| | || | ||| ||||||| |||
Sbjct 96 CTGCAAAATTACAAGACAACATCCTCTCAATCGAGTGTCTTGTCTCTGGTTGCGAGAGCT 155
Query 614 CGGGGCAGCTCGAGCCCGATAAATG-CGGTCAAATCCT-GCCAAGAGAAGTCTTTGATCG 671
| || | ||||||||| ||||| || | |||||||| | ||| ||||| || |||||||
Sbjct 156 CTGGTCGGCTCGAGCCTGATAAGTGTC-GTCAAATCTTGGCC-AGAGAGGTTTTTGATCA 213
Query 672 GTGGGGAGACGCTCTTTGC-GAGGCGGTGATT-ATGAGTTCAAAGAGATTCTATTGTCCT 729
| |||| || ||||||| | || || || ||| || ||||||||||||| || ||||||
Sbjct 214 GCGGGGTGATGCTCTTT-CTGAAGCAGT-ATTGATTCGTTCAAAGAGATTTTACTGTCCT 271
Query 730 TATAAGGATTGCTCTGCTTTGCTCTTC-TTGGACGAGAGTGAAGAAGAGAAGATGAATGT 788
||||||||||||||||||||||| ||| ||| |||||||||||| || | |||||| |
Sbjct 272 TATAAGGATTGCTCTGCTTTGCTTTTCATTG-ACGAGAGTGAAGT-GA-A-GATGAAAG- 326
Query 789 AT-CGGAGTGTCCTCATTGCCATAGAATGGTGAGTGTAGAGTGTGGGACTAAGTGGCATC 847
|| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 327 ATTCGGAGTGTCCTCATTGCCATATAATGGTGTGTGTAGAGTGTGGGACTAAGTGGCATC 386
Query 848 CGGAGATAACATGCGAGGAGTTTCAAAAGCTAGCCGAGAACGAAAGAGAAAGAGGGGATA 907
| |||||||| |||||||||||||| |||||||| ||||||||||||| ||||| ||||
Sbjct 387 CAGAGATAACTTGCGAGGAGTTTCAGAAGCTAGCGGAGAACGAAAGAGGAAGAGATGATA 446
Query 908 TATTGTT-GAAGAATATGGCAGAGAGTAAGAAGTGGAGAAGATGTCCTTCTTG 959
| ||| | | || |||||| ||| ||||| |||| |||||||||||||||
Sbjct 447 TTTTGCTCGC-GACGATGGCAAAGAAAAAGAAATGGAAAAGATGTCCTTCTTG 498
> Ahg908029 jgi|Araly1|908029|Al_scaffold_0002_1110
Length=180
Score = 198 bits (107), Expect = 7e-50
Identities = 150/171 (88%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 790 TCGGAGTGTCCTCATTGCCATAGAATGGTGAGTGTAGAGTGTGGGACTAAGTGGCATCCG 849
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 10 TCGGAGTGTCCTCATTGCCATATAATGGTGTGTGTAGAGTGTGGGACTAAGTGGCATCCA 69
Query 850 GAGATAACATGCGAGGAGTTTCAAAAGCTAGCCGAGAACGAAAGAGAAAGAGGGGATATA 909
|||||||| |||||||||||||| |||||||| ||||||||||||| ||||| |||||
Sbjct 70 GAGATAACTTGCGAGGAGTTTCAGAAGCTAGCGGAGAACGAAAGAGGAAGAGATGATATT 129
Query 910 TTGTT-GAAGAATATGGCAGAGAGTAAGAAGTGGAGAAGATGTCCTTCTTG 959
||| | | || |||||| ||| ||||| |||| |||||||||||||||
Sbjct 130 TTGCTCGC-GACGATGGCAAAGAAAAAGAAATGGAAAAGATGTCCTTCTTG 179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45976237902
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5