BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26460.1
Length=1935
Score E
Sequences producing significant alignments: (Bits) Value
Ahg344326 jgi|Araly1|344326|fgenesh1_pg.C_scaffold_4000668 1086 0.0
> Ahg344326 jgi|Araly1|344326|fgenesh1_pg.C_scaffold_4000668
Length=1725
Score = 1086 bits (588), Expect = 0.0
Identities = 694/743 (93%), Gaps = 15/743 (2%)
Strand=Plus/Plus
Query 1076 AGGAGAAGGTACCTTATTTCGCTGAGCCTGCTTATGGTCCAGTGCAGCCATCTGCTGGTC 1135
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 AGGAGAAAGTACCTTATTTCGCTGAGCCTGCTTATGGTCCAGTGCAGCCATCTGCTGGTC 1057
Query 1136 AGGAATGGCAAGATATGAGTGCATATGGTGCAATGCAAACTCAAGGACTGGCTCCTGGGT 1195
|||||||||||||||||||||||||| | | || | | | ||||||||||||
Sbjct 1058 AGGAATGGCAAGATATGAGTGCATAT-G-G---TG------C-A--A-TGGCTCCTGGGT 1102
Query 1196 ACCCCGGAGAGTGGCAGGAATACCAATATGCAGAGCAAACTGGGTATCAGGAGCAGTACC 1255
|||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1103 ACCCGGGAGAGTGGCAGGAGTACCAATATGCAGAGCAAATTGGGTATCAGGAGCAGTACC 1162
Query 1256 TTCAACCTGGAATGGAGGGTTACGAGGTCCAACCAGAAACCGATGTTTTACTAGATCCTC 1315
|||| ||||||||||||||||| ||||| ||||||||||| | |||||||||||||||||
Sbjct 1163 TTCAGCCTGGAATGGAGGGTTATGAGGTTCAACCAGAAACGGGTGTTTTACTAGATCCTC 1222
Query 1316 AACTCATGTCGCAGGAAGAGAAAGATAGGGGTTTGGGATCGGTTTTCAAGCGTGATGACC 1375
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1223 AACTCATGTCGCAGGAAGAGAAAGATAGGGGTTTGGGATCAGTGTTCAAGCGTGATGACC 1282
Query 1376 AAAGGCTTCAACAGTTGAGGGAGAGTGACGCAAGGGAGAAAGATCCAACTTTTGTATCCG 1435
||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| |
Sbjct 1283 AAAGGCTTCAACAGTTGAGAGAGAGCGATGCAAGGGAGAAAGATCCAACTTTTGTATCTG 1342
Query 1436 AGAGTTATTCAGAGTGTTATCCAGGTTACCAAGAGTACAACCATGAGATTGTCGGTAGTG 1495
|||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 1343 AGAGCTATTCTGAGTGTTACCCGGGTTACCAAGAGTACAACCATGAGATTGTCGGTAGCG 1402
Query 1496 ATGAAGAACCTGATTTGTCTAAAATGGACATGGGTGGAAAGGCAAAGGGTGGTTTACATC 1555
|||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1403 ATGAAGAAGCAGATTTGTCTAAAATGGACATGGGTGGAAAGGCAAAGGGGGGTTTACATC 1462
Query 1556 GATGGGACTTTGAGACAGAAGAGGAATGGGAAAAATATAATGAGCAGAAGGAAGCGATGC 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1463 GATGGGACTTTGAGACAGAAGAGGAATGGGAAAAATATAATGAGCAGAAGGAAGCAATGC 1522
Query 1616 CAAAAGCGGCGTTCCAATTCGGGGTAAAGATGCAAGATGGTCGAAAGACAAGGAAGCAGA 1675
||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1523 CAAAAGCAGCGTTCCAATTCGGGGTAAAGATGCAAGATGGTCGAAAGACGAGAAAGCAGA 1582
Query 1676 ACCGTGACCGTGACCAGAAGCTCAATAATGAACTTCACCAGATCAATAAGATACTTACGA 1735
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1583 ACCGTGACCGTGACCAAAAGCTCAATAACGAACTTCACCAGATCAATAAGATACTTACGA 1642
Query 1736 GAAAGAAGATGGAGAAGGAGGGTGGGGATGTTGCTTCTTTGGATGCCGCCGAGGCACAAA 1795
|||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||| |
Sbjct 1643 GAAAGAAGATGGAGAAGGAGGGTGGGGATGTTGCTTCTTTAGATGCTGTCGAGGCACAGA 1702
Query 1796 CTCCTAAGAGATCCAAGCATTGA 1818
|||| ||||||||||||||||||
Sbjct 1703 CTCCCAAGAGATCCAAGCATTGA 1725
Score = 800 bits (433), Expect = 0.0
Identities = 496/527 (94%), Gaps = 2/527 (0%)
Strand=Plus/Plus
Query 552 GGAAGGTGGCTATACCCATGACATACCGACCACGTTATATAGGAGTAAAGCTGACTGCCC 611
||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 519 GGAGGGTGGCTATACCCATGACATACCAACCACGCTATATAGGAGTAAAGCTGACTGCCC 578
Query 612 GGTGCCCGAGGAATTTGTCACAGTCAATGTTGATGGTTCTGTGCTAGATCGAATTGCTAA 671
||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 579 CATGCCCGAGGAACTGGTCACAGTCAATGTTGATGGTTCTGTGCTAGATCGAATCGCTAA 638
Query 672 AATCATGTCATATCTTCGCCTTGGGTCGTCGGGGAAAGTTCTCaagaagaaaaagaaaga 731
|||||||||||| ||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 639 AATCATGTCATACCTTCGCCTTGGATCATCAGGGAAAGTTCTCAAGAAGAAAAAGAAAGA 698
Query 732 aaaagatgggaaaggaaagaTGTCAACTATTGCTAATGATTATGATGAAGACGACAATAA 791
||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||| |
Sbjct 699 AAAAGATGGGAAAGGAAAGATGTCAACTATTGCTAATGAGTATGATGAAGACAATAATCA 758
Query 792 ATCT-AAGATTGAGAATGGATCTTCTGTGAACATAAGTGACAGGGAAGTTTTACCTCCTC 850
|||| ||| ||||||||||||||||||| ||| | ||||| ||||||||||| |||||||
Sbjct 759 ATCTAAAG-TTGAGAATGGATCTTCTGTAAACCTGAGTGAAAGGGAAGTTTTGCCTCCTC 817
Query 851 CTCCGCCATTACCACCTGGGATAAACCATCTGGATTTGAGTACGAAACAAGAAGAACCCC 910
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 818 CTCCGCCATTACCCCCTGGGATCAACCATCTGGATTTGAGTACGAAACAAGAAGAACCCC 877
Query 911 CTGTTGCCAGGACAGACGATGATGACATATTTGTTGGTGAAGGCGTCGATTACACGGTTC 970
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 878 CTGTTGCCAGGACAGACGATGATGACATATTTGTTGGTGAAGGTGTCGACTACACGGTTC 937
Query 971 CTGGTAAAGATGTGACACAGAGTCCTATTTCTGAGGACATGGAAGAATCTCCCAGGGATA 1030
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 938 CTGGTAAAGATGTGACGCAGAGTCCTATTTCTGAGGATATGGAAGAATCTCCCAGGGATA 997
Query 1031 AGGAGAAAGTATCTTATTTCGATGAGCCTGCTTATGGTCCAGTGCAG 1077
||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 998 AGGAGAAAGTACCTTATTTCGCTGAGCCTGCTTATGGTCCAGTGCAG 1044
Score = 717 bits (388), Expect = 0.0
Identities = 454/486 (93%), Gaps = 3/486 (1%)
Strand=Plus/Plus
Query 68 CTTCAAAATCGCATCACAAGGAGAAAACCGCTCGTCGGAGAGAGGAGAAACTAGAGGAAT 127
|||| ||||| ||| |||||||||||| ||||||||||| || |||||| |||||||||
Sbjct 8 CTTCGAAATCTCATTACAAGGAGAAAATTGCTCGTCGGAGGGAAGAGAAATTAGAGGAAT 67
Query 128 CCGATAATCCAAAATACAGAGATCGTGCTAAAGAAAGAAGAGAGAATCAAAATCCTGATT 187
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 68 CCGATAATCCAAAATACAGAGACCGTGCTAAAGAACGAAGAGAGAATCAAAATCCTGATT 127
Query 188 ATGATCCATCAGAGCTTAGTTCTTTCCATGCCGTTGCTCCTCCCGGAGCTGTCGATATCC 247
||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct 128 ATGATCCATCAGAGCTTGGCTCTTTCCACGCCGTTGCTCCTCCCGGAGCTGTCGATATCC 187
Query 248 GTGCTGCTGATGCACTTAAGATATCTATTGAGAACAGCAAATATCTTGGAGGTGATGTTG 307
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 188 GTGCTGCTGATGCACTTAAGCTATCTATTGAGAACAGCAAGTATCTTGGAGGTGATGTTG 247
Query 308 AACATACCCATTTAGTTAAGGGTTTGGATTATGCTTTGTTGAATAAAGTACGAAGCGAAA 367
||||||| ||||| |||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 248 AACATACTCATTTGGTTAAGGGGTTGGATTATGCTCTGTTGAATAAAGTACGAAGCGAAA 307
Query 368 TCGTTAAGAAACCTGATGGTGAAGATGGTGATGGTGGGAAGACTAGTGCGCCTAAGGAAG 427
|||| |||||||||||||||||||| ||||||||| |||||||||| ||||||||||
Sbjct 308 TCGTCAAGAAACCTGATGGTGAAGA---TGATGGTGGCAAGACTAGTGTACCTAAGGAAG 364
Query 428 ATCAGCGAGTTACTTTCCGTACCATAGCTGCAAAGTCAGTTTACCAGTGGATTGTTAAGC 487
|||| |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 365 ATCAACGAGTTACTTTCCGAACCATGGCTGCTAAGTCAGTTTACCAGTGGATTGTTAAGC 424
Query 488 CTCAGACTATCATCAAGTCTAATGAGATGTTTCTTCCCGGTAGAATGACATTTGTCTATG 547
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 425 CTCAGACTATCATCAAGTCTAATGAGATGTTCCTTCCTGGTAGAATGACATTTGTCTATG 484
Query 548 ATATGG 553
||||||
Sbjct 485 ATATGG 490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72714277705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5