BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26470.1
Length=1759
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481505 jgi|Araly1|481505|fgenesh2_kg.4__565__AT2G26470.1 2119 0.0
> Ahg481505 jgi|Araly1|481505|fgenesh2_kg.4__565__AT2G26470.1
Length=1633
Score = 2119 bits (1147), Expect = 0.0
Identities = 1500/1661 (90%), Gaps = 62/1661 (4%)
Strand=Plus/Plus
Query 133 ATGTGCGGTAGGACTCGATGTACTTTAAGACCCGACGATGTCCCCAGAGCTTCTCACCGC 192
||||||||||||||||| || || || ||||| ||||||||||| |||||||||||||||
Sbjct 1 ATGTGCGGTAGGACTCGCTGCACATTGAGACCTGACGATGTCCCAAGAGCTTCTCACCGC 60
Query 193 CACACCGTTCCTACCCGATTT-CTTCACCTCGACCGTTATCGTCCATCTTACAATGTTGC 251
||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||
Sbjct 61 CACACCGTTCCTACCCG-TTTCCTTCACCTGGACCGTTATCGTCCATCTTACAATGTTGC 119
Query 252 CCCTGGATCCTATATACCTGTTCTACGGAGAGACAATGAAGAAGTTGTTGGTGATGGTGT 311
|||||||||||||||||||||||| || ||||||||| ||||| ||||||||||||||
Sbjct 120 CCCTGGATCCTATATACCTGTTCTGCGTAGAGACAAT---GAAGTAGTTGGTGATGGTGT 176
Query 312 TGTTGTTCATTGTATGAAGTGGGGATTAGTGCCAAGTTTCACTAAGAAAACTGATAAGCC 371
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 177 TGTTGTTCATTGTATGAAGTGGGGATTAGTCCCTAGTTTCACTAAGAAAACTGATAAGCC 236
Query 372 TGATTTCTTCAAAATGTTTAATGCTCGGTCTGAATCTGTGGCTGAGAAAGCGTCTTTTCG 431
||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||
Sbjct 237 AGATTTCTTCAAAATGTTTAATGCTCGGTCTGAATCGGTAGCTGAGAAACCGTCTTTTCG 296
Query 432 TCGATTGCTTCCCAAGAATAGGTGCCTTGTTGCAGTTGATGGGTTCTATGAGTGGAAGAA 491
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 297 TCGATTGCTTCCCAAGAATAGGTGCCTAGTTGCAGTTGATGGGTTCTATGAGTGGAAGAA 356
Query 492 GGAAGGTTCAAAAAAGCAACCCTACTACATCCATTTTGAGGATGGGAGACCTCTCGTATT 551
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 357 GGAAGGTTCAAAAAAGCAACCGTACTACATCCATTTTGAGGATGGGAGACCTCTCGTATT 416
Query 552 TGCTGCTCTTTTTGATACTTGGCAGAACTCAGGAGGTGAGACACTTTACACCTTTACGAT 611
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 417 TGCTGCTCTTTTTGATACTTGGCAGAACTCAGGAGGTGAGACACTTTACACCTTCACGAT 476
Query 612 TTTGACAACCGCTTCCTCTTCAGCCCTCCAATGGCTCCATGACAGAATGCCTGTAATTCT 671
||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 477 TTTAACAACCACTTCCTCTTCAGCCCTCCAATGGCTCCATGACAGAATGCCAGTAATTCT 536
Query 672 TGGTGATAAGGATTCAATCGACACATGGTTAGATGATCCCTCGACAACGAAACTGCAGCC 731
||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 537 GGGTGACAAGGATTCAGTCGACACATGGTTAGATGATCCCTCGACGACGAAACTGCAGCC 596
Query 732 ATTACTTTCACCATATGAAAAATCGGATTTGGTATGGTATCCAGTAACCTCTGCAATTGG 791
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 597 ATTACTTTCACCATATGAAAAATCGGATTTGGTATGGTATCCAGTAACTTCTGCAATTGG 656
Query 792 TAAACCAACGTTTGATGGACCAGAGTGTATTCAACAGATACCGCTAAAGACTTCACAAAA 851
|||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct 657 TAAACCAACGTTTGATGGACCAGAGTGTGTTCAACAGATACCGTTAAAGGCTTCACAAAA 716
Query 852 TAGCTTGATCTCGAAGTTTTTCTCAACAAAGCAGCCCAAAACAGATGAAGGAGACAAAGA 911
|||||||||||||||||||||||| || || |||||||| ||||||||||||||
Sbjct 717 TAGCTTGATCTCGAAGTTTTTCTC------GC-GC--AAAACAGAAGAAGGAGACAAAGA 767
Query 912 AACCAAATCAACAGATGCAAATATCAT-AGTTGATTTGAAAAAGGAACCTACGGCTGAAA 970
||||||||| || |||||||||||| | ||||||||||||| |||||||||||| ||||
Sbjct 768 AACCAAATCGACTGATGCAAATATC-TCAGTTGATTTGAAAGAGGAACCTACGGTTGAAG 826
Query 971 ---A-G--GA--C-ACGTTTTCTGACAGCATTAAGAAAATTGAAGAACTAGACGGGGAGA 1021
| | || | || |||||||||||| | ||||||||||||||||||| ||||||||
Sbjct 827 GTTATGAAGAGGCCACATTTTCTGACAGCGTAAAGAAAATTGAAGAACTAGGCGGGGAGA 886
Query 1022 AAGATATGTCGAATGTAGCCAAAAATCTGGAGTTT-CAAGAGATTGTGAAAGCAGAACCA 1080
||||||| ||||||| ||||||||| |||| |||| ||||||||||||||||||||||||
Sbjct 887 AAGATATATCGAATGAAGCCAAAAAGCTGG-GTTTTCAAGAGATTGTGAAAGCAGAACCA 945
Query 1081 TTTGTTGAAGATAACTCAGCAGTTGCGTCACTTCCTGAACCTGTAAAGAATGATGTTCAG 1140
||| ||||||||||||||||||||| || | ||| ||||||||||||||||| ||| ||
Sbjct 946 TTTACTGAAGATAACTCAGCAGTTGCATCCCATCCCGAACCTGTAAAGAATGAAGTTGAG 1005
Query 1141 GAGGGTACAAAGGAAGAAGGCAAATCCCTAAAGACTGGTCTTACTAAAGAAACAGGTGAG 1200
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1006 GAGGGTACAATTGAAGAAGGCAAATCCCTAAAGACTTGTCTTACTAAAGAAACAGGTGAG 1065
Query 1201 AGCAGTGCCAGTATACCGGCTGAGTCCTACATCCTTGATCTCCAAAGAATCTCAAAAGAA 1260
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1066 AGCAATGCCAGTATACCGGCTGAGTCCTACAACCTTGATCTCCAAAGAATCTCAAAAGAA 1125
Query 1261 GAACCCGAGACTCAAAGCCATCATTTCTTTACTGCAGATGAGAGA-TTGAATCAGCTGCA 1319
|||||||| || ||| || | || || | |||| || || |||||||| | |||
Sbjct 1126 GAACCCGAAACCCAAGGC--T--TTACTA-A----AGATAAG-GAATTGAATCACCCGCA 1175
Query 1320 TGAGGCTGTCGAAGAT-ATTCCAGGAAATGAAAACC-AGAAGACAGTTTTAACTAGCCCG 1377
||||| ||| |||||| | |||||||||||||||| | ||||||||||||||| |||||
Sbjct 1176 TGAGGTTGTTGAAGATGAA-CCAGGAAATGAAAACCTA-AAGACAGTTTTAACTTGCCCG 1233
Query 1378 ACGACGAAGGAAGGTGGCTTAGTGTTTAG--------C----GAAAAGAG--TG-G-G-- 1419
|| |||| |||||||| ||||| |||||| | |||||||| || | |
Sbjct 1234 ACCACGATGGAAGGTGTCTTAGAGTTTAGTGAGAAGTCTCCAGAAAAGAGGATGAGTGGG 1293
Query 1420 ACAAAGCGAGACTATGAGGTATTCTCAGCTCAAGAAAAGCCACAGAAACACTATGAGAGG 1479
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1294 ACAAAGCGAGACTATGAGGTATTCTCAGCTCAAGAAAAGCCACGGAAACACTCTGAGAGG 1353
Query 1480 TTGCAAAATGTTAAAAGCAGTGGGAAACAAGGAAAGATGCATGGAATGGGGAAATCTAAC 1539
||||||||||||| ||| ||||||||||| |||| || || |||| |||||||||||||
Sbjct 1354 TTGCAAAATGTTATAAGTAGTGGGAAACACGGAAGGAACCAAGGAAAGGGGAAATCTAAC 1413
Query 1540 ATCAAGAAATCTAAGGAGACGCAGTCTACATTACATTTCTTTTTCGATGAGAAATAGTTT 1599
||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1414 ATCAAAAAACCTAAGGAGACGCAGTCTACGTTACATTTCTTTTTCGATGAGAAATAGTTC 1473
Query 1600 TGAGTCTACATAACATCTATGAGGACCATGTTGGCCTACTTTTGTTGTAGATAATGTTAG 1659
|||||||| |||||||||||| ||||| |||| ||||||| ||||| |||||||||||
Sbjct 1474 -GAGTCTACGGAACATCTATGAGAACCATTTTGGGCTACTTTGGTTGTCGATAATGTTAG 1532
Query 1660 ATAAG-ACCATCGTTTTGGGAATGTTGCTTGTATTGTATGTGTAGTGTTTGATCTTTGAT 1718
||| | ||| ||||||| |||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1533 ATAGGTACCGTCGTTTTTGGAATGTTGCTTATATTGTATATGTAGTGTTTGATCTTTGAT 1592
Query 1719 CTAAGGTAATATTATTATGAATGAATTGGGTTTTTAATGTC 1759
||||||||||| |||||||||||||||||||||||||||||
Sbjct 1593 CTAAGGTAATAGTATTATGAATGAATTGGGTTTTTAATGTC 1633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66010394585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5