BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G26510.1 Length=2029 Score E Sequences producing significant alignments: (Bits) Value Ahg481510 jgi|Araly1|481510|fgenesh2_kg.4__570__AT2G26510.1 2872 0.0 > Ahg481510 jgi|Araly1|481510|fgenesh2_kg.4__570__AT2G26510.1 Length=1982 Score = 2872 bits (1555), Expect = 0.0 Identities = 1886/2036 (93%), Gaps = 62/2036 (3%) Strand=Plus/Plus Query 2 CAAATCAAACAAGTGACTTTTTATATTTATCTTATTAATTCTGTAGTCTCGAGATTCGCT 61 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 1 CAAATCAAACAAGTGACTTTTTATACTTATC---TTAATTCTGTAGTCTCGAGATTCGCT 57 Query 62 TTTTCTCCTGCTTACTTCTTTTTATCATCTTCTCTTTGTCGGTTTGATTTGGAAAAACTT 121 |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 58 TTTTCTCCTGCTAACTTCTTTTTATCATCTTC-CTTTGTCGGTTTGATTTGGAAAAACTT 116 Query 122 TCTGCaaaaaaaaGAGAGATTCTTAAACTTTTTATCTCAAGATCCTTTCAAAAAATCTGA 181 |||||||||| |||| ||||||||||||||||||||||||||||||||||||||| || | Sbjct 117 TCTGCAAAAAGAAGATAGATTCTTAAACTTTTTATCTCAAGATCCTTTCAAAAAAACTAA 176 Query 182 AAAGAGAAGATTTTTAATAAAAAAGAATGGTTGAAACTGGTCACCATCATCAACATCCAC 241 |||||||||| ||||||| || || |||||||||||||||||| | ||||||||||||| Sbjct 177 AAAGAGAAGA-TTTTAATTAATAACAATGGTTGAAACTGGTCA-C--CATCAACATCCAC 232 Query 242 CGGCACCGGCTGCAGCCGGTCATCCGCCGGTTCCATCCATGGCGATGGCGCG-TAACATG 300 ||||||||||||||||||||||||||||||||||||||||||||||||| || || || | Sbjct 233 CGGCACCGGCTGCAGCCGGTCATCCGCCGGTTCCATCCATGGCGATGGC-CGTTAGCA-G 290 Query 301 -GGAACCACTTGGCCTCCGGCGGAGCAACTTCATCATCTTCAATATTGCATCCACTCTAA 359 ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 291 AGGACCCACTTGGCCACCGGCGGAGCAACTTCATCATCTTCAATATTGCATCCACTCTAA 350 Query 360 CCCTTCTTGGCATGAGACGGTTGTACTGGCTTTCCAGCATTACATCGTTATGCTCGGGAC 419 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 351 TCCTTCTTGGCATGAGACGGTTGTTCTGGCTTTCCAGCATTACATCGTTATGCTCGGGAC 410 Query 420 TACTGTTTTGATTGCCAACACACTAGTGTCACCAATGGGTGGAGATCCTGGTGATAAAGC 479 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 411 TACTGTTTTGATTGCCAACACACTAGTGCCACCAATGGGTGGAGATGCTGGTGATAAAGC 470 Query 480 GCGGGTTATCCAGACTATATTGTTTATGTCGGGCATAAACACGTTGCTACAAACGCTTAT 539 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 471 GCGGGTTATCCAGACTATATTGTTTATGTCGGGAATTAACACGTTGCTACAAACGCTTAT 530 Query 540 CGGGACAAGGCTTCCCACGGTTATGGGAGTATCGTTCGCGTATGTTCTTCCCGTATTGTC 599 |||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| Sbjct 531 AGGGACAAGGCTTCCCACGGTTATGGGCGTTTCGTTCGCGTATGTTCTTCCTGTATTGTC 590 Query 600 TATAATCAGAGATTACAACAATGGTCAATTCGATTCCGAGAAACAGAGATTCCGACATAC 659 |||||||||||||||||| | |||||||| ||||||||||| ||||||||||||||||| Sbjct 591 TATAATCAGAGATTACAATGACGGTCAATTTGATTCCGAGAAGCAGAGATTCCGACATAC 650 Query 660 TATGAGAACGGTACAAGGATCATTAATCATTTCTTCATTCGTCAACATCATAATCGGATA 719 ||||||||| || ||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 651 TATGAGAACCGTTCAAGGATCACTAATCATTTCCTCATTCGTCAACATCATAATCGGATA 710 Query 720 TGGTCAGGCATGGGGGAACTTAATAAGAATCTTTAGTCCCATCATTGTTGTGCCCGTTGT 779 ||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||| Sbjct 711 TGGTCAGGCATGGGGGAACTTAATAAGAATCTTTACTCCCATCATTGTTGTACCAGTTGT 770 Query 780 TTCTGTTGTGAGCCTTGGCCTATTCCTTAGAGGCTTCCCACTGCTTGCAAACTGTG-TGG 838 ||| ||||||| | |||| || | || ||||||||||||| ||| Sbjct 771 TTCCGTTGTGA------G------CCTT---GG-----C-CT-CTTGCAAACTGTGTTGG 808 Query 839 AAATCGGTCTACCAATGCTGATTCTGTTGATCATCACACAGCAATATCTTAAACA-TG-C 896 ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | || | Sbjct 809 AAATCGGTCTACCAATGCTGATTTTGTTGATCATCTCACAGCAATATCTTAAA-AGTGTC 867 Query 897 ATTCTCAAGGATTTCTATGATTCTTGAAAGATATGCTTTACTTGTTTGCCTGGCTATCAT 956 ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 868 -TTCTCAAGGATTTCTGCGATACTTGAAAGATATGCTTTACTTGTTTGCCTGGCTATCAT 926 Query 957 ATGGGCTTTTGCTGCTATCCTTACTGTTTCTGGTGCTTATAATAATGTTTCTACCGCAAC 1016 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| | || Sbjct 927 ATGGGCTTTTGCTGCTATCCTTACTGTTTCTGGTGCTTATAACAATGTTTCTACTACGAC 986 Query 1017 AAAACAAAGTTGTCGAACTGATCGTGCCTTTCTTATGTCATCAGCTCCCTGGATTAGAAT 1076 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 987 AAAACAAAGTTGTCGCACGGATCGTGCCTTTCTTATGTCATCAGCTCCCTGGATTAGAAT 1046 Query 1077 CCCATATCCATTCCAGTGGGGGACTCCGATATTCAAAGCGAGTCATGTTTTTGGAATGTT 1136 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1047 CCCATATCCGTTCCAGTGGGGGACTCCGATATTCAAAGCGAGTCATGTTTTTGGAATGTT 1106 Query 1137 TGGTGCTGCAATTGTCGCATCTGCAGAGTCTACCGGAGTATTTTTCGCTGCATCTAGACT 1196 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1107 TGGTGCTGCGATTGTCGCATCTGCAGAGTCTACCGGTGTATTTTTCGCTGCATCTAGACT 1166 Query 1197 AGCAGGAGCAACAGCGCCTCCAGCACATGTCGTCTCTCGTAGTATCGGTCTACAGGGTAT 1256 ||||||||||||||||||||||||||| || || |||||||||||||| ||||||||||| Sbjct 1167 AGCAGGAGCAACAGCGCCTCCAGCACACGTTGTGTCTCGTAGTATCGGGCTACAGGGTAT 1226 Query 1257 TGGTGTGCTCCTTGAAGGAATATTTGGTTCCATTACTGGCAATACCGCGTCCGTGGAAAA 1316 ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct 1227 TGGTGTGCTCCTTGAAGGAATATTTGGTTCCATTAGTGGCAATACCGCTTCCGTGGAAAA 1286 Query 1317 TGTCGGTCTCCTTGGCCTCACACGAATAGGGAGTAGACGAGTGGTGCAGGTTTCAACGTT 1376 ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1287 TGTTGGTCTCCTTGGCCTCACACGAATAGGGAGTAGACGAGTGGTGCAGATTTCAACGGG 1346 Query 1377 TTTCATGATATTTTTCTCCATATTTGGAAAATTTGGCG-CGTTCTTTGCGTCTATTCCGC 1435 ||||||||||||||||||||||||||||||||| || | | |||||||||||||| |||| Sbjct 1347 TTTCATGATATTTTTCTCCATATTTGGAAAATTCGGTGGC-TTCTTTGCGTCTATCCCGC 1405 Query 1436 TTCCAATCTTTGCAGGCGTATACTGTATACTACTTGGAATCGTTGTTGCTGTTGGAATAT 1495 ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct 1406 TTCCAATCTTTGCAGGCATATACTGTATACTACTTGGAATTGTTGTTGCTGTTGGAATAT 1465 Query 1496 CGTTTATACAGTTTACCGACA-CTAATTCGATGAGAAACATGTACGTCATTGGTGTCTCT 1554 |||||||||||||||| |||| | ||||| |||||||||||||||||||| ||||||||| Sbjct 1466 CGTTTATACAGTTTACTGACATC-AATTCAATGAGAAACATGTACGTCATCGGTGTCTCT 1524 Query 1555 CTCTTCTTAAGTCTTTCCATCGCTCAGTACTTTCTTGCCAACACTTCAAGAGCAGGATAT 1614 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1525 CTCTTTTTAAGTCTTTCCATCGCTCAGTACTTTCTTGCCAACACTTCAAGAGCAGGATAT 1584 Query 1615 GGACCAGTTAGGACAGCAGGAGGATGGTTCAACGATATACTTAATACGATATTTGCTTCG 1674 ||||| ||||| |||||||| ||||||||||| ||||||||||| || |||||||||||| Sbjct 1585 GGACCGGTTAGAACAGCAGGTGGATGGTTCAATGATATACTTAACACAATATTTGCTTCG 1644 Query 1675 GCTCCGTTGGTGGCGACCATTCTTGCGACCATACTAGATAACACGTTGGAAGCAAGACAT 1734 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1645 GCTCCTTTGGTGGCAACCATTCTTGCGACCATACTAGATAACACGTTGGAAGCAAGACAT 1704 Query 1735 GCAAGTGACGACGCAAGAGGAATCCCGTGGTGGAAGCCCTTCCAGCACAGGAACGGAGAC 1794 |||||||| | |||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 1705 GCAAGTGA-G--GCAAGAGGAATCTCATGGTGGAAGCCCTTCCAGCACAGGAACGGAGAC 1761 Query 1795 GGCAGGAACGATGAGTTCTATAGTATGCCCCTTAGAATCAACGAGTTAATGCCGACACGG 1854 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 1762 ACCAGGAACGATGAGTTCTATAGTATGCCCCTTAGAATCAACGAGTTAATACCGACGCGG 1821 Query 1855 TTCCTTTGAAGACTGCCCCTGAACGTTTCTTCTGTATTTGGAAATGTAAGATATGATTAT 1914 |||||||||| || ||| |||||||||||||||| ||||||||||||||||||| | Sbjct 1822 TTCCTTTGAA-AC--CCC-TGAACGTTTCTTCTGTGTTTGGAAATGTAAGATATG-T--- 1873 Query 1915 GTGCATACCTTGTAGCTTCATTGGGGAAAAATTGAGTCCAGTGGATACAAA-TGAACATA 1973 | |||| ||||||||||||||||||||| |||||||||| |||||||||| |||||||| Sbjct 1874 G--CATATCTTGTAGCTTCATTGGGGAAAGATTGAGTCCAATGGATACAAAATGAACATA 1931 Query 1974 GGCCTTTGATGGAAAAAGCTAtttttttGCAAACTATATAACTTGTGTTACTAGAT 2029 ||||||||||||| ||||||||||| ||||||||| | ||||||||||||||| Sbjct 1932 GGCCTTTGATGGAGAAAGCTATTTTA---CAAACTATA-A-CTTGTGTTACTAGAT 1982 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76294760735 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5