BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26510.1
Length=2029
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481510 jgi|Araly1|481510|fgenesh2_kg.4__570__AT2G26510.1 2872 0.0
> Ahg481510 jgi|Araly1|481510|fgenesh2_kg.4__570__AT2G26510.1
Length=1982
Score = 2872 bits (1555), Expect = 0.0
Identities = 1886/2036 (93%), Gaps = 62/2036 (3%)
Strand=Plus/Plus
Query 2 CAAATCAAACAAGTGACTTTTTATATTTATCTTATTAATTCTGTAGTCTCGAGATTCGCT 61
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1 CAAATCAAACAAGTGACTTTTTATACTTATC---TTAATTCTGTAGTCTCGAGATTCGCT 57
Query 62 TTTTCTCCTGCTTACTTCTTTTTATCATCTTCTCTTTGTCGGTTTGATTTGGAAAAACTT 121
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 58 TTTTCTCCTGCTAACTTCTTTTTATCATCTTC-CTTTGTCGGTTTGATTTGGAAAAACTT 116
Query 122 TCTGCaaaaaaaaGAGAGATTCTTAAACTTTTTATCTCAAGATCCTTTCAAAAAATCTGA 181
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||| || |
Sbjct 117 TCTGCAAAAAGAAGATAGATTCTTAAACTTTTTATCTCAAGATCCTTTCAAAAAAACTAA 176
Query 182 AAAGAGAAGATTTTTAATAAAAAAGAATGGTTGAAACTGGTCACCATCATCAACATCCAC 241
|||||||||| ||||||| || || |||||||||||||||||| | |||||||||||||
Sbjct 177 AAAGAGAAGA-TTTTAATTAATAACAATGGTTGAAACTGGTCA-C--CATCAACATCCAC 232
Query 242 CGGCACCGGCTGCAGCCGGTCATCCGCCGGTTCCATCCATGGCGATGGCGCG-TAACATG 300
||||||||||||||||||||||||||||||||||||||||||||||||| || || || |
Sbjct 233 CGGCACCGGCTGCAGCCGGTCATCCGCCGGTTCCATCCATGGCGATGGC-CGTTAGCA-G 290
Query 301 -GGAACCACTTGGCCTCCGGCGGAGCAACTTCATCATCTTCAATATTGCATCCACTCTAA 359
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 AGGACCCACTTGGCCACCGGCGGAGCAACTTCATCATCTTCAATATTGCATCCACTCTAA 350
Query 360 CCCTTCTTGGCATGAGACGGTTGTACTGGCTTTCCAGCATTACATCGTTATGCTCGGGAC 419
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 351 TCCTTCTTGGCATGAGACGGTTGTTCTGGCTTTCCAGCATTACATCGTTATGCTCGGGAC 410
Query 420 TACTGTTTTGATTGCCAACACACTAGTGTCACCAATGGGTGGAGATCCTGGTGATAAAGC 479
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 411 TACTGTTTTGATTGCCAACACACTAGTGCCACCAATGGGTGGAGATGCTGGTGATAAAGC 470
Query 480 GCGGGTTATCCAGACTATATTGTTTATGTCGGGCATAAACACGTTGCTACAAACGCTTAT 539
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 471 GCGGGTTATCCAGACTATATTGTTTATGTCGGGAATTAACACGTTGCTACAAACGCTTAT 530
Query 540 CGGGACAAGGCTTCCCACGGTTATGGGAGTATCGTTCGCGTATGTTCTTCCCGTATTGTC 599
|||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 531 AGGGACAAGGCTTCCCACGGTTATGGGCGTTTCGTTCGCGTATGTTCTTCCTGTATTGTC 590
Query 600 TATAATCAGAGATTACAACAATGGTCAATTCGATTCCGAGAAACAGAGATTCCGACATAC 659
|||||||||||||||||| | |||||||| ||||||||||| |||||||||||||||||
Sbjct 591 TATAATCAGAGATTACAATGACGGTCAATTTGATTCCGAGAAGCAGAGATTCCGACATAC 650
Query 660 TATGAGAACGGTACAAGGATCATTAATCATTTCTTCATTCGTCAACATCATAATCGGATA 719
||||||||| || ||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 651 TATGAGAACCGTTCAAGGATCACTAATCATTTCCTCATTCGTCAACATCATAATCGGATA 710
Query 720 TGGTCAGGCATGGGGGAACTTAATAAGAATCTTTAGTCCCATCATTGTTGTGCCCGTTGT 779
||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||
Sbjct 711 TGGTCAGGCATGGGGGAACTTAATAAGAATCTTTACTCCCATCATTGTTGTACCAGTTGT 770
Query 780 TTCTGTTGTGAGCCTTGGCCTATTCCTTAGAGGCTTCCCACTGCTTGCAAACTGTG-TGG 838
||| ||||||| | |||| || | || ||||||||||||| |||
Sbjct 771 TTCCGTTGTGA------G------CCTT---GG-----C-CT-CTTGCAAACTGTGTTGG 808
Query 839 AAATCGGTCTACCAATGCTGATTCTGTTGATCATCACACAGCAATATCTTAAACA-TG-C 896
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | || |
Sbjct 809 AAATCGGTCTACCAATGCTGATTTTGTTGATCATCTCACAGCAATATCTTAAA-AGTGTC 867
Query 897 ATTCTCAAGGATTTCTATGATTCTTGAAAGATATGCTTTACTTGTTTGCCTGGCTATCAT 956
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 868 -TTCTCAAGGATTTCTGCGATACTTGAAAGATATGCTTTACTTGTTTGCCTGGCTATCAT 926
Query 957 ATGGGCTTTTGCTGCTATCCTTACTGTTTCTGGTGCTTATAATAATGTTTCTACCGCAAC 1016
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct 927 ATGGGCTTTTGCTGCTATCCTTACTGTTTCTGGTGCTTATAACAATGTTTCTACTACGAC 986
Query 1017 AAAACAAAGTTGTCGAACTGATCGTGCCTTTCTTATGTCATCAGCTCCCTGGATTAGAAT 1076
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 987 AAAACAAAGTTGTCGCACGGATCGTGCCTTTCTTATGTCATCAGCTCCCTGGATTAGAAT 1046
Query 1077 CCCATATCCATTCCAGTGGGGGACTCCGATATTCAAAGCGAGTCATGTTTTTGGAATGTT 1136
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 CCCATATCCGTTCCAGTGGGGGACTCCGATATTCAAAGCGAGTCATGTTTTTGGAATGTT 1106
Query 1137 TGGTGCTGCAATTGTCGCATCTGCAGAGTCTACCGGAGTATTTTTCGCTGCATCTAGACT 1196
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1107 TGGTGCTGCGATTGTCGCATCTGCAGAGTCTACCGGTGTATTTTTCGCTGCATCTAGACT 1166
Query 1197 AGCAGGAGCAACAGCGCCTCCAGCACATGTCGTCTCTCGTAGTATCGGTCTACAGGGTAT 1256
||||||||||||||||||||||||||| || || |||||||||||||| |||||||||||
Sbjct 1167 AGCAGGAGCAACAGCGCCTCCAGCACACGTTGTGTCTCGTAGTATCGGGCTACAGGGTAT 1226
Query 1257 TGGTGTGCTCCTTGAAGGAATATTTGGTTCCATTACTGGCAATACCGCGTCCGTGGAAAA 1316
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1227 TGGTGTGCTCCTTGAAGGAATATTTGGTTCCATTAGTGGCAATACCGCTTCCGTGGAAAA 1286
Query 1317 TGTCGGTCTCCTTGGCCTCACACGAATAGGGAGTAGACGAGTGGTGCAGGTTTCAACGTT 1376
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1287 TGTTGGTCTCCTTGGCCTCACACGAATAGGGAGTAGACGAGTGGTGCAGATTTCAACGGG 1346
Query 1377 TTTCATGATATTTTTCTCCATATTTGGAAAATTTGGCG-CGTTCTTTGCGTCTATTCCGC 1435
||||||||||||||||||||||||||||||||| || | | |||||||||||||| ||||
Sbjct 1347 TTTCATGATATTTTTCTCCATATTTGGAAAATTCGGTGGC-TTCTTTGCGTCTATCCCGC 1405
Query 1436 TTCCAATCTTTGCAGGCGTATACTGTATACTACTTGGAATCGTTGTTGCTGTTGGAATAT 1495
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1406 TTCCAATCTTTGCAGGCATATACTGTATACTACTTGGAATTGTTGTTGCTGTTGGAATAT 1465
Query 1496 CGTTTATACAGTTTACCGACA-CTAATTCGATGAGAAACATGTACGTCATTGGTGTCTCT 1554
|||||||||||||||| |||| | ||||| |||||||||||||||||||| |||||||||
Sbjct 1466 CGTTTATACAGTTTACTGACATC-AATTCAATGAGAAACATGTACGTCATCGGTGTCTCT 1524
Query 1555 CTCTTCTTAAGTCTTTCCATCGCTCAGTACTTTCTTGCCAACACTTCAAGAGCAGGATAT 1614
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1525 CTCTTTTTAAGTCTTTCCATCGCTCAGTACTTTCTTGCCAACACTTCAAGAGCAGGATAT 1584
Query 1615 GGACCAGTTAGGACAGCAGGAGGATGGTTCAACGATATACTTAATACGATATTTGCTTCG 1674
||||| ||||| |||||||| ||||||||||| ||||||||||| || ||||||||||||
Sbjct 1585 GGACCGGTTAGAACAGCAGGTGGATGGTTCAATGATATACTTAACACAATATTTGCTTCG 1644
Query 1675 GCTCCGTTGGTGGCGACCATTCTTGCGACCATACTAGATAACACGTTGGAAGCAAGACAT 1734
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1645 GCTCCTTTGGTGGCAACCATTCTTGCGACCATACTAGATAACACGTTGGAAGCAAGACAT 1704
Query 1735 GCAAGTGACGACGCAAGAGGAATCCCGTGGTGGAAGCCCTTCCAGCACAGGAACGGAGAC 1794
|||||||| | |||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1705 GCAAGTGA-G--GCAAGAGGAATCTCATGGTGGAAGCCCTTCCAGCACAGGAACGGAGAC 1761
Query 1795 GGCAGGAACGATGAGTTCTATAGTATGCCCCTTAGAATCAACGAGTTAATGCCGACACGG 1854
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1762 ACCAGGAACGATGAGTTCTATAGTATGCCCCTTAGAATCAACGAGTTAATACCGACGCGG 1821
Query 1855 TTCCTTTGAAGACTGCCCCTGAACGTTTCTTCTGTATTTGGAAATGTAAGATATGATTAT 1914
|||||||||| || ||| |||||||||||||||| ||||||||||||||||||| |
Sbjct 1822 TTCCTTTGAA-AC--CCC-TGAACGTTTCTTCTGTGTTTGGAAATGTAAGATATG-T--- 1873
Query 1915 GTGCATACCTTGTAGCTTCATTGGGGAAAAATTGAGTCCAGTGGATACAAA-TGAACATA 1973
| |||| ||||||||||||||||||||| |||||||||| |||||||||| ||||||||
Sbjct 1874 G--CATATCTTGTAGCTTCATTGGGGAAAGATTGAGTCCAATGGATACAAAATGAACATA 1931
Query 1974 GGCCTTTGATGGAAAAAGCTAtttttttGCAAACTATATAACTTGTGTTACTAGAT 2029
||||||||||||| ||||||||||| ||||||||| | |||||||||||||||
Sbjct 1932 GGCCTTTGATGGAGAAAGCTATTTTA---CAAACTATA-A-CTTGTGTTACTAGAT 1982
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76294760735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5