BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G26520.1

Length=916
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg932929 jgi|Araly1|932929|scaffold_400917.1                        712    0.0  


> Ahg932929 jgi|Araly1|932929|scaffold_400917.1
Length=470

 Score =  712 bits (385),  Expect = 0.0
 Identities = 449/478 (94%), Gaps = 11/478 (2%)
 Strand=Plus/Plus

Query  237  tcttcttcttctGTTAACAATGGCGTCAATGCCATTGTACTGGCAACCACCACCAGCTAC  296
            ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3    TCTCCTTCTTCTATTAACAATGGCGTCAATGCCATTGTACTGGCAACCACCACCAGCTAC  62

Query  297  AGAGGTTTCACAAGACTCATCCTCCGTCTCCTCCGCTGGAAATTCCACCATTGGTCCTTT  356
             |||||| ||||| |||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct  63   GGAGGTTCCACAACACTCATCCTCCGTCTCCTCCGCCGGAAACTCCACCATTGGTCCTTT  122

Query  357  TATCGCCGTCTTTATCGTTGTCACCGTTCTTTGTGTTCTCGCTAGTGTTATTGGACGGCT  416
            ||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct  123  TATCGCCGTCTTTATAGTCGTCACCGTTCTCTGTGTTCTCGCTAGTGTTATTGGACGGCT  182

Query  417  TTGCTCCGGCAAAACCATCTTAGGGTATGGAGATTACGATATGGAGAGATGGGCTGAGAG  476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  183  TTGCTCCGGCAAAACCATCTTAGGGTATGGAGATTACGATATGGAGAGATGGGCTGAGAG  242

Query  477  TAGATGTGGTTCTTGTATCGACGGTCACATTCATCCT-CACCGGCCGTCTCCGTCGCCTA  535
            |||||| ||||||||||||||||| ||||| ||| || ||||||||||||||||||||| 
Sbjct  243  TAGATGCGGTTCTTGTATCGACGGCCACAT-CATTCTTCACCGGCCGTCTCCGTCGCCTC  301

Query  536  CGCCTCCACCTCGTCAGCCTTTGCACCACACTTCCTCCGGCGTCTCCGCTGAATCTGAAG  595
            |||||||   ||   ||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct  302  CGCCTCC---TC---AGCCTTTGCACCACACTTCTTCCGGCGTCTCTGCTGAATCTGAAG  355

Query  596  GACACGTGGCAGATCTAGATCATGAGACTGATGGAGAGAAACAAGACTCTTTAGACCATG  655
            ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct  356  GACACGTGGCAGATCTAGAT---GAGACTGATGGAGAGAAACAAGACTCTTTAGACCATG  412

Query  656  AGCCTCCACAACAAACACCATCATCAGCTCATTCTTGATTAGtttttctcttttgatt  713
            ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  413  AGCCTCCACCACAAACACCATCAACAGCTCATTCTTGATTAGTTTTTCTCTTTTGATT  470



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33967519047


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5