BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G26520.1 Length=916 Score E Sequences producing significant alignments: (Bits) Value Ahg932929 jgi|Araly1|932929|scaffold_400917.1 712 0.0 > Ahg932929 jgi|Araly1|932929|scaffold_400917.1 Length=470 Score = 712 bits (385), Expect = 0.0 Identities = 449/478 (94%), Gaps = 11/478 (2%) Strand=Plus/Plus Query 237 tcttcttcttctGTTAACAATGGCGTCAATGCCATTGTACTGGCAACCACCACCAGCTAC 296 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3 TCTCCTTCTTCTATTAACAATGGCGTCAATGCCATTGTACTGGCAACCACCACCAGCTAC 62 Query 297 AGAGGTTTCACAAGACTCATCCTCCGTCTCCTCCGCTGGAAATTCCACCATTGGTCCTTT 356 |||||| ||||| |||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 63 GGAGGTTCCACAACACTCATCCTCCGTCTCCTCCGCCGGAAACTCCACCATTGGTCCTTT 122 Query 357 TATCGCCGTCTTTATCGTTGTCACCGTTCTTTGTGTTCTCGCTAGTGTTATTGGACGGCT 416 ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| Sbjct 123 TATCGCCGTCTTTATAGTCGTCACCGTTCTCTGTGTTCTCGCTAGTGTTATTGGACGGCT 182 Query 417 TTGCTCCGGCAAAACCATCTTAGGGTATGGAGATTACGATATGGAGAGATGGGCTGAGAG 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 TTGCTCCGGCAAAACCATCTTAGGGTATGGAGATTACGATATGGAGAGATGGGCTGAGAG 242 Query 477 TAGATGTGGTTCTTGTATCGACGGTCACATTCATCCT-CACCGGCCGTCTCCGTCGCCTA 535 |||||| ||||||||||||||||| ||||| ||| || ||||||||||||||||||||| Sbjct 243 TAGATGCGGTTCTTGTATCGACGGCCACAT-CATTCTTCACCGGCCGTCTCCGTCGCCTC 301 Query 536 CGCCTCCACCTCGTCAGCCTTTGCACCACACTTCCTCCGGCGTCTCCGCTGAATCTGAAG 595 ||||||| || ||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 302 CGCCTCC---TC---AGCCTTTGCACCACACTTCTTCCGGCGTCTCTGCTGAATCTGAAG 355 Query 596 GACACGTGGCAGATCTAGATCATGAGACTGATGGAGAGAAACAAGACTCTTTAGACCATG 655 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 356 GACACGTGGCAGATCTAGAT---GAGACTGATGGAGAGAAACAAGACTCTTTAGACCATG 412 Query 656 AGCCTCCACAACAAACACCATCATCAGCTCATTCTTGATTAGtttttctcttttgatt 713 ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 413 AGCCTCCACCACAAACACCATCAACAGCTCATTCTTGATTAGTTTTTCTCTTTTGATT 470 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33967519047 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5