BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26530.1
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481513 jgi|Araly1|481513|fgenesh2_kg.4__573__AT2G26530.1 1882 0.0
> Ahg481513 jgi|Araly1|481513|fgenesh2_kg.4__573__AT2G26530.1
Length=1344
Score = 1882 bits (1019), Expect = 0.0
Identities = 1227/1323 (93%), Gaps = 32/1323 (2%)
Strand=Plus/Plus
Query 84 ATGTTGCCAAAAGTTGTTTTTTATATTATATG-----TTTGGTCAGCGAAAACGGTTTAA 138
|||||||||||||||| ||||||||||||||| ||||||||||||||||||| | |
Sbjct 20 ATGTTGCCAAAAGTTGATTTTTATATTATATGTTTAATTTGGTCAGCGAAAACGGTCT-A 78
Query 139 AGCACTCTCTCTTTCCTCTCGCCTTCCTTTGATGATCCTTTTTAGTTCCCTTCTTCTCAT 198
|| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 79 AG--TTCTCCCTTTCCTCTCGGCTTCCTTTGATGATCCTTTTTAGTTCCCTTCTTCTCAT 136
Query 199 TGCTCTTGAGACCATCTCCGAACTCAAAGGAAACT-AGAAACAATGGAAGTGATGAGCTT 257
||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||| ||
Sbjct 137 TGCTCTTGAGACCATCTCCGAACTCAACGGAAA-TCAGAAACAATGGAAGTGATGAGTTT 195
Query 258 GACTGCCCCATCTTCACCGAGACAATTATCTGGCTGCTTCTTAAGCGCACCAACAAGCCC 317
|||||| |||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 196 GACTGCTCCATCTTCACCGAGACAATTCTCCGGGTGCTTCTTAAGCGCACCAACAAGCCC 255
Query 318 TAGAAGATTCAATGAGTTTTATAGAGAGTTTGAAGAGGCCGCAACAAGAAACTTCTCCGA 377
||||||| ||| ||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 256 TAGAAGAATCACTGAGTTTTACAGAGAGTTTGAAGAGGCCACAACAAGAAACTTCTCCGA 315
Query 378 CCGTCTTACGGTTCCTTTTGATTGGGAAGAGACTCCAGGCACGCCTAGGAAGATCACCAA 437
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||
Sbjct 316 CCGTCTTACGGTTCCTTTTGATTGGGAAGAGACTCCAGGCACTCCTAGGACGATCATCAA 375
Query 438 CGATGATGATGATGATA---T---TGATTTCGCTTTCGAGATTGGTGGGAAACTCGAAAC 491
|||||| || || |||| | ||||||||||||||||||||||||||||||||||||
Sbjct 376 CGATGACGAGGAAGATACTGTGGATGATTTCGCTTTCGAGATTGGTGGGAAACTCGAAAC 435
Query 492 GACGTCGCTTTTTGCTGAAGAGCTTTTTGATGGAGGCAAAATCAAACCCTTGAAGCCTCC 551
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 436 GACGTCGCTTTTTGCTGAAGAGCTTTTTGATGGAGGCAAAATAAAACCCTTGAAGCCTCC 495
Query 552 TCCGTATTTACAATTAGACCATCATCATCAGCCTCAGATTTTATCTCCAAGGTCTCCAAG 611
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 496 TCCGTATTTACAATTAGACCATCACCATCAGCCTCAGGTTTTATCTCCAAGGTCTCCAAG 555
Query 612 ATCACCTATTGCTCATGGTAAGAACATTATCCGCAAAGCTTTTTCCCCAAGAAAGAAACC 671
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 ATCACCTATTGCTCACGGTAAGAACATTATCCGCAAAGCTTTTTCCCCAAGAAAGAAACC 615
Query 672 GGATAACGTGGATCCTTTTGAGGTCGCCATGGATAAAGCTAGGAATGGCTTAGGAGAGGA 731
||| |||||||||||||||||||| |||||||| |||||| |||||||| ||||||||||
Sbjct 616 GGAAAACGTGGATCCTTTTGAGGTAGCCATGGAGAAAGCTCGGAATGGCGTAGGAGAGGA 675
Query 732 AAGAGGGAGAGGGAGACGTCAAAACTCTGGTCGTAGAGTTGCTCGATCACTTTCGCCTTT 791
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 676 AAGAGGGAGAGGGAGACGTCAAAACTCGGGTCGTAGAGTTGCTCGATCACTTTCTCCTTT 735
Query 792 TCGGGTTTCGGCTTATCCATGGgaagaacaagaacaagaacaagaacaagaacagagaga 851
|||||||||||||||||||||||||||||||||||| | ||||| || |||||
Sbjct 736 TCGGGTTTCGGCTTATCCATGGGAAGAACAAGAACA-G-----GAACA-GA---GAGAG- 784
Query 852 tgtacaagaacagaGGAAAGGGACCTTGTCTTCTATTCCATCTACATCTTCATCAGCTTG 911
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 785 -GTACAAGAACAGAGGAAAGGGACCTTGTCTTCTATTCCATCTACATCTTCATCAACTTG 843
Query 912 CGTGTCTTGCAAGTCATCTTCCTCAAAGAAATGGAGACTAAAGGACTTTCTTCTGTTCCG 971
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 844 CGTGTCTTGCAAGTCATCTTCCTCAAAGAAATGGAGGCTAAAGGACTTTCTTCTGTTTCG 903
Query 972 AAGTGCATCCGAAGGAAGAGCAAGGCACAACAAAGATTCGGTAAAGACGTTTACAAGTTT 1031
||| || || ||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 904 AAGCGCGTCAGAAGGAAGAGCAAGGCACAACAAAGATTCTGTAAAGACGTTTTCAAGTTT 963
Query 1032 GTTTAGGAAGCAAGAAGACACCAAGAACTCGAGTTCACGAGGAAGAGGGTCATCATCGGT 1091
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 964 GTTTAGGAAGCAAGAAGACACCAAGAACTCGAGTTCGCGAGGAAGAGGGTCATCATCTGT 1023
Query 1092 CTCCGCCCATGAATTCCATTACATGTCTAAGAAAGCAGAAACGAAAGATTTGAAGAAGAA 1151
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1024 CTCCGCCCATGAATTCCATTACATGGCTAAGAAAGCAGAAACTAAAGATTTGAAGAAGAA 1083
Query 1152 GACTTTCTTGCCTTACATGCAAATAGGACGATTCGCCTTCTAAATT-AGTTCTTCCAAAG 1210
||||||||||||||||||||||||||||||||||||||||||| || | |||||| ||||
Sbjct 1084 GACTTTCTTGCCTTACATGCAAATAGGACGATTCGCCTTCTAATTTCA-TTCTTCAAAAG 1142
Query 1211 CCAGAAGTAAAAAGATTTATTTGTTTGTTCAATTATGTTCTATGAAGGACCAAGTCTCTT 1270
||| |||||||||||||||||||||||||| |||||||| | ||||||||||||||||||
Sbjct 1143 CCAAAAGTAAAAAGATTTATTTGTTTGTTCCATTATGTTATCTGAAGGACCAAGTCTCTT 1202
Query 1271 CTTCTCTCTTGTGTGGTTGATTTGTGCTCAGAAGTTTGTAGAAATTAACATCTTTTGTAC 1330
|||||||||||||||||||||||||| | |||| ||||| |||||||| | |||||| |
Sbjct 1203 CTTCTCTCTTGTGTGGTTGATTTGTGTTGGGAAGCTTGTAAAAATTAACGTTTTTTGTGC 1262
Query 1331 ACATTAGTTTTGCTA-TACGCATTATGTGACTGTCCATCTTTTACATTTACACAAAAAAC 1389
|||||| |||||| | | | || ||||||||||||||||||||||||||||||| ||||
Sbjct 1263 ACATTACTTTTGCGACT-CACAATATGTGACTGTCCATCTTTTACATTTACACACAAAAT 1321
Query 1390 AAA 1392
|||
Sbjct 1322 AAA 1324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54430960105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5