BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26540.1
Length=1403
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481514 jgi|Araly1|481514|fgenesh2_kg.4__574__AT2G26540.1 1561 0.0
> Ahg481514 jgi|Araly1|481514|fgenesh2_kg.4__574__AT2G26540.1
Length=1183
Score = 1561 bits (845), Expect = 0.0
Identities = 979/1043 (94%), Gaps = 12/1043 (1%)
Strand=Plus/Plus
Query 226 ATCTCTGAGCAAACCAGTTTTCGCTTCTCCTTCCCCAATTCGAAATTCAATTTCTTCGTC 285
|||||| ||||||| ||||||||||| |||| ||| |||||||||||||||||| ||||
Sbjct 122 ATCTCTAAGCAAACGAGTTTTCGCTTGTCCTGCCCTAATTCGAAATTCAATTTCCCCGTC 181
Query 286 -CGTCTCTTCATCTTCTTCCTCCGTTAGTAGCTCCAATTCGATTCCTCAGGTCGTCGTAA 344
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TC-TCTCTTCATCTTCTTCCTCCGTTAGTAGCTCCAATTCGATTCCTCAGGTCGTCGTAA 240
Query 345 CACGAGAACGAGGCAAGAACAATCAAATCATCAAAGCTTTGGAGAAA-AATGGCATATCA 403
| ||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 241 CCCGAGAACGAGGCAAGAACAATCAAATCATCAAAGCTTTGGAGAAACAA-GGGATATCA 299
Query 404 TCTTTAGAGCTTCCGTTGATTCAACATGCGCGAGGACCTGATTTCGATCGGCTTGCTTCT 463
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCTTTAGAGCTTCCCTTGATTCAACATGCGCGAGGACCTGATTTCGATCGGCTTGCTTCT 359
Query 464 GTATTAAATGATAAGAGCTTTGACTGGATCATCATAACATCTCCAGAAGCAGGTTCTGTT 523
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATATTAAGTGATAAGAGCTTTGACTGGATCATCATAACATCTCCAGAAGCAGGTTCTGTC 419
Query 524 TTTCTCGAGGCGTGGAAGACAGCTAGCTCCCCAGAAGTGCAAATAGGTGTAGTAGGAGCT 583
||||||||||| |||||| | |||||||||||| ||||||||||||||||||||||||||
Sbjct 420 TTTCTCGAGGCCTGGAAGGCGGCTAGCTCCCCAAAAGTGCAAATAGGTGTAGTAGGAGCT 479
Query 584 GGAACAGCCAGGGTATTTGAAGAGGCAATGAAATCGGCAGATGGATTGCTTCATGTTGCC 643
||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 480 GGAACCGCCAGGGTATTTGAAGAGGCAATGCAATCGGCAGAAGGATTGCTTCATGTTGCA 539
Query 644 TTTACACCATCAAAAGCAACTGGTAAAGTCTTGGCTTCGGAGCTTCCAGAGAAAGTTGGC 703
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTTACACCATCAAAAGCAACGGGTAAAGTCTTGGCTTCGGAGCTTCCAGAGAAAGTTGGC 599
Query 704 AAAAGGTCCTCTGTCTTATACCCGGCTTCTCTAAAAGCAGGCAATGATATTGTGGAAGGG 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAAAGGTCCTCTGTCTTATACCCGGCTTCTCTAAAAGCAGGCAATGATATTGTGGAAGGG 659
Query 764 TTGTCCAAACGTGGGTTTGAAGTTGTCAGGCTGAATACATACACAACAGTTCCGGTGCAG 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTGTCCAAACGTGGGTTTGAAGTTGTCAGGCTGAATACATACACAACAGTTCCGGTGCAG 719
Query 824 AGTGTTGATACGGTGCTCCTGCAACAGGCACTATCTGCTCCTGTTCTTTCTGTAGCTTCT 883
||||||||||| ||||| |||||||||||| | ||||||||||||||||||||||||||
Sbjct 720 AGTGTTGATACAGTGCTTCTGCAACAGGCAGTGTCTGCTCCTGTTCTTTCTGTAGCTTCA 779
Query 884 CCTTCTGCAGTTCGCGCCTGGCTGCATCTGATTCAAAATGAGGAGCAATGGAGCAATTAC 943
|||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 780 CCTTCTGCAGTTCGGGCCTGGCTGAATCTGATTCAAAACGAGGAGCAATGGAGCAATTAC 839
Query 944 GTTGCCTGCATTGGAGAGACAACTGCATCAGCTGCTAGAA-GACTAGGATTGAAAAACGT 1002
|||||||||||||||||||||||||| |||||||| | || | |||||| ||||||||||
Sbjct 840 GTTGCCTGCATTGGAGAGACAACTGCTTCAGCTGCAA-AACGTCTAGGACTGAAAAACGT 898
Query 1003 CTACTACCCAGAGA-AACCAGGACTTGAAGGGTGGGTCGAGAGCATAATGGAAGCTCTAG 1061
||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 899 GTACTACCCAGA-ACAACCAGGACTTGAAGGGTGGGTCGAGAGCATCATGGAAGCTCTAG 957
Query 1062 GTGCTCACGCAGATTCAAGTAACCCTAGCAGCAGGAATTGAATTACACTTGTGCCATCCT 1121
||||||||| ||||||||| ||| ||||| ||||||||||||| ||||||||||||| ||
Sbjct 958 GTGCTCACGAAGATTCAAGAAACTCTAGCGGCAGGAATTGAATCACACTTGTGCCATTCT 1017
Query 1122 CTCATAGATTTTACTTATGGAGGACTTTGAGTTTGGTCAGTGCCTGTAATTTAGAGGACA 1181
||||||||||||||| ||||||||||||| ||||| |||||| ||||||||||||||||
Sbjct 1018 CTCATAGATTTTACTC-TGGAGGACTTTGAATTTGGACAGTGCATGTAATTTAGAGGACA 1076
Query 1182 GGGAAAAAGAAAGCAAATGAT-GCTTTTGAGAAAATACTGAAGCCCTTGTAAGATATCTC 1240
||||||||||| |||||||| | | |||||||| |||| ||||||||||||||||||||
Sbjct 1077 TGGAAAAAGAAACCAAATGATTG-TGTTGAGAAA-TACTCAAGCCCTTGTAAGATATCTC 1134
Query 1241 AGATAGCTTTTGTCGTACAGTAT 1263
||||||||||||| | |||||||
Sbjct 1135 AGATAGCTTTTGTAGAACAGTAT 1157
Score = 97.1 bits (52), Expect = 3e-19
Identities = 92/109 (84%), Gaps = 11/109 (10%)
Strand=Plus/Plus
Query 66 AAAGCGACTACGATTCCATTTTCACCGGCGCTTCCGTGAGACAACATCTCTC-CA-TCT- 122
|||||||| ||||||||||||||||||||||||||||| ||||||||||||| | |||
Sbjct 2 AAAGCGACGACGATTCCATTTTCACCGGCGCTTCCGTGCGACAACATCTCTCTCTCTCTA 61
Query 123 --TG---GAACTTTTTCTAATGGCATTATTACTCCTTTCTCACTGCTCT 166
| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 62 CCTCACAGAACTATTTCTAATGGCATTG---CTCCTTTCTCACTGCTCT 107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52450267365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5