BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26550.1
Length=1379
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481515 jgi|Araly1|481515|fgenesh2_kg.4__575__AT2G26550.1 826 0.0
> Ahg481515 jgi|Araly1|481515|fgenesh2_kg.4__575__AT2G26550.1
Length=1119
Score = 826 bits (447), Expect = 0.0
Identities = 620/697 (89%), Gaps = 38/697 (5%)
Strand=Plus/Plus
Query 24 CTTCTCTTCTCAGGCCAACTCCATTACTCTCTACACCTCGTAAGCTCACTCACTCTCATC 83
||||||||||||||||||||||||||||||||||||||| ||| | | | |||||||
Sbjct 8 CTTCTCTTCTCAGGCCAACTCCATTACTCTCTACACCTCATAA----A-TTA-TCTCATC 61
Query 84 TTCACACATCTATCTCTTTCCCATTCC-AAATCTCAACTCAGAGAAAGCCACAAAAGCAT 142
||||||| ||| ||||||||||| ||| |||| || ||||||||||| ||||| || |||
Sbjct 62 TTCACACCTCTCTCTCTTTCCCA-TCCGAAATTTCGACTCAGAGAAACCCACATAATCAT 120
Query 143 CTTCTCAATCTATGTCGTTCGACACCAACACCGTCACAACAAAAGGCCTCACAGAGGAAG 202
||||||||||||||||||||| || |||| |||||||| |||||| ||||||||||||||
Sbjct 121 CTTCTCAATCTATGTCGTTCGTCATCAACGCCGTCACAGCAAAAGACCTCACAGAGGAAG 180
Query 203 AGAACAAGGTACAGGAAACAATACCCAGGAGAAAACATTGGTATAACTGAGGAAATGAGA 262
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGAACAAGGTACAGGAAACAGTACCCAGGAGAAAACATTGGTATAACTGAGGAAATGAGA 240
Query 263 TTCGTCGCCATGAGATTACGCAATGTTAATGGTAAAAAATTAGATCTTTCTGAAGATAAA 322
|||||||||||||||||||||||||||||||| ||||| | | ||| |||
Sbjct 241 TTCGTCGCCATGAGATTACGCAATGTTAATGG--AAAAA--A-A-----CTG--GAT--- 285
Query 323 ACTGACACCGagaaggaagaagaagaagaagaagaagacgatgatgatgatgatgaagta 382
|| | | | | | || || ||| ||||||| | || | || |||||||||
Sbjct 286 -CT--TTCTG-G--TG-ATAA-AA-CTGAACAAGAAGA--A-GA--A-GAAGATGAAGTA 330
Query 383 aaggaagagaCTTGGAAGCCTAGCAAAGAAGGGTTTCTTAAGTACTTAGTTGATAGCAAG 442
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 331 AAGGAAGAGACTTGGAAACCGAGCAAAGAAGGGTTTCTTAAGTACTTAGTTGATAGCAAG 390
Query 443 CTTGTCTTCGATACTATTGAACGAATTGTTGACGAATCTGAGAATGTGTCTTATGCTTAC 502
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 391 CTTGTCTTCGATACCATTGAACGAATTGTCGACGAATCTGAGAATGTTTCTTATGCTTAC 450
Query 503 TTTAGGAGAACAGGATTAGAGAGATGTGAAAGTATTGAGAAGGATCTACAATGGTTAAGA 562
|| |||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||
Sbjct 451 TTCAGGAGAACAGGATTAGAGAGATGTGAAAGTCTTGAGAAGGATTTACAATGGTTTAGA 510
Query 563 GAACAAGATTTGGTTATACCAGAACCAAGTAATGTAGGAGTTTCTTATGCAAAGTATTTG 622
| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 511 GGACAAGATTTGGTTATACCAGAACCAAGTAATATAGGAGTTTCTTATGCGAAGTATTTG 570
Query 623 GAAGAACAAGCAGGAGAAAGTGCTCCTTTGTTTCTTTCTCATTTCTACAGTATCTACTTT 682
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 571 GAAGAACAAGCAGGGGAAAGTGCACCTTTGTTTCTTTCTCATTTCTACAGTATCTACTTT 630
Query 683 TCACATATTGCTGGTGGTCAAGTTCTTGTAAGACAGG 719
|||||||||||||||||||||||| ||||||||||||
Sbjct 631 TCACATATTGCTGGTGGTCAAGTTATTGTAAGACAGG 667
Score = 327 bits (177), Expect = 1e-88
Identities = 193/201 (96%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 884 GTATCTGAGAAACTTCTGGAAGGAAAGGAGCTGGAGTTCAATAGGTGGGAAGGGGATGCA 943
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 919 GTATCTGAGAAGCTTCTGGAAGGAAAGGAGCTGGATTTCAATAGGTGGGAAGGGGATGCA 978
Query 944 CAAGACTTGCTTAAAGGCGTCCGTGAGAAGCTTAACGTGCTTGGGGAGCACTGGAGTCGG 1003
|||||||||||||||||||||||||||||||||||||| || || |||||||||| ||||
Sbjct 979 CAAGACTTGCTTAAAGGCGTCCGTGAGAAGCTTAACGTTCTCGGAGAGCACTGGACTCGG 1038
Query 1004 GACGAGAAGAACAAATGCTTGAAGGAAACGGCAAAGGCATTTAAGTATATGGGGCAGATA 1063
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1039 GACGAGAAGAACAAATGCTTGAAGGAAACAGCAAAGGCGTTTAAGTATATGGGGCAGATA 1098
Query 1064 GTTCGCTTGATCATCTTGTAA 1084
|||||||||||||||||||||
Sbjct 1099 GTTCGCTTGATCATCTTGTAA 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51618429618
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5