BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26560.1
Length=1465
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481516 jgi|Araly1|481516|fgenesh2_kg.4__576__AT2G26560.1 2248 0.0
> Ahg481516 jgi|Araly1|481516|fgenesh2_kg.4__576__AT2G26560.1
Length=1438
Score = 2248 bits (1217), Expect = 0.0
Identities = 1383/1458 (95%), Gaps = 32/1458 (2%)
Strand=Plus/Plus
Query 1 AATATCTCACAATCAAAGTTCTATCTCCTCAAGTATCAATACATTGATATCCATT----a 56
||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1 AATATCTCATAATCAAAGTTCTATCTCCTCAAGTATCAATACATAGATATCCATTAACAA 60
Query 57 aaaaaaa-GAAA-TATCAATAC---ATTGCTTTGCTT-GTTCTGTAAGATGCAAATGGAC 110
||||||| ||| ||||||||| ||| |||||||| ||| |||||||||||||||||
Sbjct 61 AAAAAAACAAAAGTATCAATACATAATTACTTTGCTTATTTC-GTAAGATGCAAATGGAC 119
Query 111 AGCCCCAAATCTCCTCTCCAGCCCCCGACCTATGGAAACTTAGTTACAATCCTCAGCATC 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGCCCCAAATCTCCTCTCCAGCCCCCGACCTATGGAAACTTAGTTACAATCCTCAGCATC 179
Query 171 GACGGTGGTGGCATTAGAGGGCTAATCCCTGCCGTTATCCTTGGTTTTCTCGAGTCCGAA 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GACGGTGGTGGCATTAGAGGGCTAATCCCTGCCGTTATCCTTGGTTTTCTCGAGTCCGAA 239
Query 231 CTCCAGAAATTGGATGGAGAAGAAGCAAGGCTTGCAGACTACTTTGATGTAATAGCGGGA 290
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 240 CTTCAGAAATTGGATGGAGAAGAAGCAAGGCTTGCAGACTACTTTGATGTAATGGCGGGA 299
Query 291 ACAAGCACCGGTGGTCTAGTGACAGCCATGCTCACCGCGCCTAATAAGGAAGGCCGACCC 350
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACAAGCACTGGTGGTCTGGTGACAGCCATGCTCACCGCGCCTAATAAGGAAGGCCGACCC 359
Query 351 TTATTTGCAGCGTCTGAAATTAAAGATTTCTATCTTGAGCAATGTCCGAAGATCTTCCCT 410
|| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 360 TTGTTTGCAGCCTCTGAGATTAAAGATTTCTATCTTGAGCAATGTCCAAAGATCTTCCCT 419
Query 411 CAAGATCATTTCCCATTCTCAGCCGCCAAAAAACTCGTGAAGTCCTTGACTGGTCCTAAA 470
|||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |||
Sbjct 420 CAAGATCATTTCCCATTCTCGGCCGCCAAAAACCTTGTGAAGTCCTTGACTGGTCCGAAA 479
Query 471 TATGACGGTAAATACCTTCATCAGCTTATCCACGCTAAGTTGGGTGATACAAAGTTGAGT 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TATGACGGTAAATACCTTCATCAGCTTATCCACGCTAAGTTGGGTGATACAAAGTTGAGT 539
Query 531 CAAACACTTACCAACGTTGTCATTCCAACGTTCGATATCAAGCATCTTCAACCTACTATC 590
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 CAAACACTTACCAACGTTGTCATTCCAACGTTCGATATCAAGTATCTTCAACCTACTATC 599
Query 591 TTTAGTAGTTATGAGGTAAAAAACCATCCTCTCAAGGACGCAACCCTCGCAGACATTGCC 650
||||||||||| ||||||||||| |||||||||||| ||||||||||||| |||||||||
Sbjct 600 TTTAGTAGTTACGAGGTAAAAAATCATCCTCTCAAGAACGCAACCCTCGCTGACATTGCC 659
Query 651 ATCTCAACTTCAGCTGCCCCTACATACTTGCCTGCCCATTTCTTCAAAGTTGAAGATTTA 710
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 660 ATCTCAACTTCAGCTGCCCCTACATACTTGCCTGCCCATTTCTTCAAAGTTGAAGATTCA 719
Query 711 AACGGAAACGCTAAAGAATACAATCTTATTGATGGTGGAGTTGCAGCTAACAACCCGGCT 770
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ACCGGAAACGTTAAAGAATACAATCTTATTGATGGTGGAGTTGCAGCTAACAACCCGGCT 779
Query 771 TTGTTGGCCATTGGGGAAGTAACAAATGAGATCTC-AGGAGGAAGCAGTGACTTTTTCCC 829
||| ||||||||||||| ||||| ||||||||| | ||| ||||||||||| ||||||||
Sbjct 780 TTGCTGGCCATTGGGGAGGTAACGAATGAGATCACAAGG-GGAAGCAGTGATTTTTTCCC 838
Query 830 AATAAGACCAAATGATTACGGAAGGTTTCTTGTGCTTTCGCTTGGAACCGGAAATCATAA 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AATAAGACCAAATGATTACGGAAGGTTTCTTGTGCTTTCGCTTGGAACCGGAAATCATAA 898
Query 890 AGCCGAAGAGAAATTCAATGCAAAAGAAGTAGCTGGTTGGGGACTATTGAATTGGTTAAC 949
||||||||| ||||||||||| ||||||||||||||||||||| | |||| |||||||||
Sbjct 899 AGCCGAAGAAAAATTCAATGCTAAAGAAGTAGCTGGTTGGGGATTGTTGAGTTGGTTAAC 958
Query 950 ACACGACAACTCTACACCTATCATTGATGCTTTCTCGCAAGCTAGCTCCGACATGGTTGA 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ACACGACAACTCTACACCTATCATTGATGCTTTCTCGCAAGCTAGCTCCGACATGGTTGA 1018
Query 1010 TTTCCATCTCTCTGCCGTTTTTCGAGCTCTTCATTCCGAAGCCAACTATATTCGCATCCA 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TTTCCATCTCTCTGCCGTTTTTCGAGCTCTTCATTCCGAAGCCAACTATATTCGCATCCA 1078
Query 1070 GGATGACACATTAACTGGGGATGCTGCTTCTGTTGATATCGCTACCGTCG-AGAATCTGG 1128
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
Sbjct 1079 GGATGACACATTAACTGGGGATGCTGCTTCTGTTGATATCGCTACCG-CGGAGAATCTTG 1137
Query 1129 ACATTCTTGCCAAGACAGGAGATGAACTACTTAAAAAACCTGTTGCAAGAGTCAACCTAG 1188
||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1138 ACATTCTCGCCAAGATAGGAGATGAACTACTCAAAAAACCTGTTGCAAGAGTCAACCTAG 1197
Query 1189 ACTCGGGTTGTAACGAAAATGCTTATGAAACGACTAATGAACATGCTCTTATAAAGTTAG 1248
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1198 ACTCGGGTTGTAACGAAAATGCTTATAAAACGACTAATGAACATGCTCTTATAAAGTTAG 1257
Query 1249 CAGGAATACTTTCAAAAGAAAAGAAGATCCGAGACATTCGTTCACCTCATGCAAAAGCTC 1308
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1258 CAGGAATACTTTCAAAAGAAAAGAAGATCCGAGACATGCGATCACCTCATGCAAAAGCTC 1317
Query 1309 CAATTAGGATCTAAAGAGATCAATTATTGTATCTTGTATATTGTTGATGATTCGTTTGTT 1368
||||||||||||||| | | | ||| | |||||||||||||||||||||
Sbjct 1318 CAATTAGGATCTAAA----T-A------G-ATC----A-ATTGTTGATGATTCGTTTGTT 1360
Query 1369 TCACTAATGCACGTTTGGATTTATATTAATAAAAAGGTTGCACCACATTGTGGTCACTTG 1428
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1361 TTACTAATGCACGTTTGGATTTATATTAATAAAAAGGTTGCACCACATTGTGGTCACTTG 1420
Query 1429 TACGTTTGAATAAAGTCA 1446
||||||||||||||||||
Sbjct 1421 TACGTTTGAATAAAGTCA 1438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54811862555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5