BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26570.1
Length=2583
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481517 jgi|Araly1|481517|fgenesh2_kg.4__577__AT2G26570.1 3600 0.0
> Ahg481517 jgi|Araly1|481517|fgenesh2_kg.4__577__AT2G26570.1
Length=2494
Score = 3600 bits (1949), Expect = 0.0
Identities = 2220/2351 (94%), Gaps = 17/2351 (1%)
Strand=Plus/Plus
Query 209 ACAATCTCAAACTGATACTGAAGAGACTCAACAATCTCAAACTGATGACACTACCGGCAA 268
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 152 ACAATATCAAACTGATACTGAAGAGACTCAACAATCTCAAACTGATAACACTACCGGCAA 211
Query 269 TGCGAAGATTTATGTCGATGACACGTTTTCGCCTTCTGATGCTGCAACCGCTGCGGTGTT 328
| |||| ||||||||||||| |||||||||||| |||| ||||||||| ||||||| |||
Sbjct 212 TACGAAAATTTATGTCGATGGCACGTTTTCGCCATCTGTTGCTGCAACTGCTGCGGGGTT 271
Query 329 AACCGGAAAAGATAGTACGAGTACAACAATTGTAGAAGAAGTGATGGAGCCAGATGAGAT 388
|| ||| ||||||||||||| |||||||| ||||||||||||||||||| || ||||
Sbjct 272 CACTGGACAAGATAGTACGAGGACAACAATCGTAGAAGAAGTGATGGAGCAAGGGGAGAC 331
Query 389 TGGTTTACCTAGTGTCAAGATTACCGAGGCTGCGACGGGTACAGCAAGAAATGGTGGGGG 448
|||||||||| |||| | |||||| ||||||||| ||||||||||||||||||| ||
Sbjct 332 TGGTTTACCTCGTGTGAGGATTACTGAGGCTGCGGTGGGTACAGCAAGAAATGGT---GG 388
Query 449 GTCACCTAGAACTGTATCATCTCCTAGATTTTCAGGATCACCGGTGAGCACTGGAACACC 508
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 389 TTCACCTAGAACTGTATCATCTCCTAGATTTTCAGGATCACCGGTGAGCACCGGAACACC 448
Query 509 GAAAAATGTGGACTCACATCGAGGTTTAATCGATACCGCAGCGCCATTTGAATCTGTTAA 568
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 449 GAAAAATGTGGACTCACATCGAGGTTTAATCGACACTGCAGCGCCATTTGAATCTGTTAA 508
Query 569 AGAAGCTGTATCAAAATTTGGAGGAATTACTGACTGGAAGTCTCACCGAATGCAAGCGGT 628
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 509 AGAAGCTGTCTCAAAATTTGGAGGAATTACTGACTGGAAATCTCACCGAATGCAAGCGGT 568
Query 629 AGAGAGACGAAAGCTTATTGAAGAAGAGCTTAAAAAGATTCATGAGGAGATTCCTGAGTA 688
||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 569 AGAGAGACGCAAGCTTATAGAAGAAGAGCTTAAAAAGATCCATGAGGAGATTCCTGAGTA 628
Query 689 CAAAACACATTCAGAAACTGCAGAGGCTGCAAAACTGCAAGTGCTTAAGGAGCTGGAAAG 748
|||||||||||| ||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 629 CAAAACACATTCGGAAACAGCTGAGGCTGCAAAACTGCAAGTGCTTAAGGAGCTAGAAAG 688
Query 749 CACAAAGAGACTTATAGAACAGTTGAAGCTTAATTTGGACAAGGCACAAACAGAAGAACA 808
|||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 689 CACAAAGAGACTCATAGAACAATTGAAGCTTAATTTGGAGAAGGCGCAAACAGAAGAACA 748
Query 809 ACAGGCGAAGCAAGACTCGGAGCTTGCTAAGCTGAGGGTTGAAGAGATGGAACAAGGAAT 868
|||||||||||| || |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 749 ACAGGCGAAGCAGGATTCGGAGCTTGCTAAACTGAGGGTTGAAGAGATGGAGCAAGGAAT 808
Query 869 AGCTGAAGATGTCAGTGTTGCAGCTAAAGCGCAACTTGAGGTGGCTAAGGCGAGGCATAC 928
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 809 AGCTGAAGATGTCAGTGTTGCAGCTAAAGCGCAACTTGAGGTGGCCAAGGCGAGGCATAC 868
Query 929 AACAGCGATTACAGAGTTGTCTTCTGTCAAGGAGGAACTAGAAACTCTGCATAAGGAATA 988
|||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 869 AACAGCAATTACAGAGTTGTGTTCTGTCAAGGAGGAGCTAGAAACTCTGCATAAGGAATA 928
Query 989 TGATGCTCTGGTGCAAGATAAAGATGTGGCTGTAAAGAAAGTAGAAGAAGCAATGTTGGC 1048
|||||| ||||||||||| ||||||| ||| ||||||||||| || ||||||||||||||
Sbjct 929 TGATGCGCTGGTGCAAGAAAAAGATGCGGCCGTAAAGAAAGTCGAGGAAGCAATGTTGGC 988
Query 1049 GTCAAAAGAAGTTGAGAAGACAGTGGAAGAACTCACCATAGAGTTGATAGCTACAAAGGA 1108
||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||
Sbjct 989 ATCAAAAGAAGTTGAGAAGACAGTTGAAGAACTTACCATAGAGCTGATAGCTACAAAGGA 1048
Query 1109 GTCATTGGAATCAGCACATGCTTCTCATTTAGAGGCGGAAGAACAGAGGATTGGAGCAGC 1168
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1049 GTCACTGGAATCAGCACATGCTTCTCATTTAGAGGCGGAAGAACAAAGGATTGGAGCAGC 1108
Query 1169 TATGGCTAGAGACCAGGATACTCACCGTTGGGAGAAGGAACTGAAGCAAGCGGAAGAGGA 1228
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1109 CATGGCCAGAGACCAGGATACTCACCGCTGGGAGAAGGAACTGAAGCAAGCGGAAGAGGA 1168
Query 1229 ACTCCAAAGACTTAACCAACAGATACATTCTTCGAAAGATCTAAAATCGAAGCTCGACAC 1288
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1169 ACTCCAAAAACTGAACCAACAGATACATTCTTCGAAAGATCTAAAATCGAAGCTTGACAC 1228
Query 1289 TGCCTCAGCGCTGCTTCTTGATTTGAAGGCGGAATTGGTAGCTTATATGGAATCCAAGCT 1348
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1229 TGCCTCAGCACTGCTTCTTGATTTGAAGGCAGAATTGGTAGCTTATATGGAATCCAAGCT 1288
Query 1349 AAAACAAGAAGCGTGTGACTCAACCACAAACACCGATCCTTCGACAGAAAACATGAGCCA 1408
|||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1289 AAAACAGGAAGCGTGTGACTCAAACACAAACACTGATCCTTCGACAGAAAACATGAGCCA 1348
Query 1409 TCCAGATTTACATGCAGCTGTTGCCTCTGCAAAGAAGGAACTTGAAGAGGTCAATGTCAA 1468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1349 TCCAGATTTACATGCAGCTGTTGCCTCTGCAAAGAAGGAACTTGAAGAGGTCAATGTCAA 1408
Query 1469 TATTGAGAAAGCAGCTGCTGAAGTGAGTTGC-TTGAAATTGGCCTCCTCTTCCTTGCAAC 1527
||| ||||||||| |||||||||||| || | |||||| | |||||||||||||||||||
Sbjct 1409 TATCGAGAAAGCATCTGCTGAAGTGAATT-CTTTGAAACTAGCCTCCTCTTCCTTGCAAC 1467
Query 1528 TGGAACTCGAGAAAGAAAAGTCTACTCTTGCCTCTATCAAACAGAGAGAAGGAATGGCCT 1587
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1468 TGGAACTCGAGAAAGAAAAGTCTACTCTTGCCTCAATCAAACAAAGAGAAGGAATGGCCT 1527
Query 1588 CTATAGCAGTAGCTTCTATAGAGGCTGAAATTGACAGAACGAGGTCGGAAATAGCTTCGG 1647
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1528 CTATAGCAGTTGCTTCTATAGAGGCTGAAATTGACAGAACGAGGTCAGAAATAGATTCGG 1587
Query 1648 TTCAGTCAAAGGAGAAAGACGCGAGAGAGAAAATGGTGGAGCTACCGAAGCAACTTCAGC 1707
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1588 TTCAGTCAAAGGAGAAAGACGCGAGAGATAAAATGGTGGAGCTACCCAAGCAACTTCAGC 1647
Query 1708 AAGCAGCAGAAGAGGCTGATGAAGCAAAGTCACTTGCTGAAGTTGCTCGCGAAGAGCTAC 1767
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1648 AAGCAGCAGAAGAGGCTGATGAAGCAAAGTCACTTGCTGAAGTTGCTCGTGAAGAGCTTC 1707
Query 1768 GAAAGGCGAAAGAAGAAGCAGAGCAAGCAAAAGCTGGAGCAAGTACAATGGAGAGCAGGC 1827
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1708 GAAAGGCGAAAGAAGAAGCAGAGCAAGCAAAGGCTGGAGCAAGTACAATGGAGAGCAGGC 1767
Query 1828 TATTTGCTGCGCAGAAGGAAATCGAAGCAGCTAAAGCTTCAGAGAGGCTGGCCTTAGCTG 1887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1768 TATTTGCTGCGCAGAAGGAAATCGAAGCAGCTAAAGCTTCAGAGAGGCTGGCCTTAGCTG 1827
Query 1888 CCATCAAGGCTTTGGAGGAGAGTGAATCAACATTGAAAGCTAATGACACCGATTCTCCAC 1947
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1828 CCATCATGGCTTTGGAGGAGAGTGAATCAACATTGAAAGCTAATGACACCGATTCTCCAC 1887
Query 1948 GAAGCGTTACACTTTCGCTAGAAGAGTACTATGAGCTCAGCAAACGTGCTCACGAGGCAG 2007
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1888 GAAGCGTTACACTTTCACTAGAAGAGTACTATGAGCTCAGCAAACGTGCCCACGAGGCAG 1947
Query 2008 AAGAACTCGCGAACGCAAGAGTAGCAGCAGCGGTTTCAAGAATCGAGGAAGCTAAAGAAA 2067
||||||| |||||||| ||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 1948 AAGAACTGGCGAACGCCAGAGTAGCAGCGGCGGTTTCAAGGATCGACGAAGCTAAAGAAA 2007
Query 2068 CAGAAATGAGAAGCTTGGAGAAGTTGGAAGAAGTAAACAGAGACATGGATGCGAGAAAGA 2127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2008 CAGAAATGAGAAGCTTGGAGAAGTTGGAAGAAGTAAACAGAGACATGGATGCGAGAAAGA 2067
Query 2128 AGGCATTAAAAGAAGCAACTGAAAAGGCTGAGAAGGCCAAAGAAGGGAAGTTGGGGGTGG 2187
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2068 AGGCATTAAAAGAAGCAACTGAAAAGGCTGAGAAGGCGAAAGAAGGGAAGTTGGGGGTGG 2127
Query 2188 AGCAGGAGCTGAGGAAATGGAGGGCAGAACATGAACAAAAGAGAAAGGCTGGTGATGGAG 2247
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2128 AACAGGAGCTGAGGAAATGGAGGGCAGATCATGAACAAAAGAGAAAGGCTGGTGATGGAG 2187
Query 2248 TCAACACTGAGAAAAACCTAAAAGAAAGCTTTGAAGGAGGAAAGATGGAGCAATCACCTG 2307
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 2188 GCAACACTGAGAAAACCCAAAAAGAAAGCTTTGAAGGAGGAAAGATGGAGCAATCACCTG 2247
Query 2308 AAGCTGTTGTTTATGCCTCCAGCCCAAGTGAGTCATATGGAACAGAAGAAAACTCTGAAA 2367
| |||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2248 AGGCTGCTGTTTATACCTCCAGCCCAAGTGAGTCATATGGAACAGAAGATAACTCTGAAA 2307
Query 2368 CCAATCTATCCCCACAGACCAAGTCTCGAAAGAAAAAGAAGAAGCTTTCTTTCCCCCGGT 2427
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2308 CCAATCTGTCCCCACAGACCAAGTCTCGAAAGAAAAAGAAGAAGCTTTCTTTCCCCCGTT 2367
Query 2428 TTTTTATGTTCTTGTCAAAGAAGAAGTCACATAATAATTGAGTTCAGTTTCAATTCAAAC 2487
|||||||||| ||||||||||| |||||||| ||| | || ||||||||||||||||||
Sbjct 2368 TTTTTATGTTTTTGTCAAAGAAAAAGTCACAGAAT--T-GATTTCAGTTTCAATTCAAAC 2424
Query 2488 GCCTAATTCTC-TT-T-TG----ATCTATTGGAGCTTTGTATTC-AGAAAGAACTCCATT 2539
||||||| || || | || ||||||||||||||| | ||| |||||||||||||||
Sbjct 2425 ACCTAATTATCATTGTCTGTGTCATCTATTGGAGCTTT-TCTTCCAGAAAGAACTCCATT 2483
Query 2540 TGAACAAGTAT 2550
|||||||||||
Sbjct 2484 TGAACAAGTAT 2494
Score = 261 bits (141), Expect = 2e-68
Identities = 182/201 (91%), Gaps = 5/201 (2%)
Strand=Plus/Plus
Query 26 AATTTCAGGTTACAGGGGAATGGAGGACTTAAAAACTGTTGAAGCATCTGATAATGTTGT 85
|||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 2 AATTTCAGGTAACAGGCGAATGGAGGACTTAAAAACTGTTGAAGCATCTGAT---GTTGT 58
Query 86 TAGTGATAATGTTGAGAA-AGTCAATCCTGAGTTGATTGATTCCACCATTCGAGAATCTA 144
|||||| |||||||| || ||| |||||||||||||| || ||| ||||||||||||||
Sbjct 59 TAGTGACAATGTTGA-AACAGTAAATCCTGAGTTGATCGAATCCGCCATTCGAGAATCTT 117
Query 145 ACATACAATCTGCAACAAAGGTTGATAATATTCCACAATCTCAAACTGACACTGAAGAGA 204
||| |||| || |||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 118 ACACACAAAATGTAACAAAGGTTGATAATATTCCACAATATCAAACTGATACTGAAGAGA 177
Query 205 CTCAACAATCTCAAACTGATA 225
|||||||||||||||||||||
Sbjct 178 CTCAACAATCTCAAACTGATA 198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97396756465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5