BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26580.1
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481524 jgi|Araly1|481524|fgenesh2_kg.4__584__AT2G26580.2 750 0.0
> Ahg481524 jgi|Araly1|481524|fgenesh2_kg.4__584__AT2G26580.2
Length=764
Score = 750 bits (406), Expect = 0.0
Identities = 526/581 (91%), Gaps = 19/581 (3%)
Strand=Plus/Plus
Query 103 AGATCGATCATGGCTAACTCTGTGATGGCAACCGAACAGCTCTGCTACATCCCTTGCAAC 162
|||||||||||||||||||||| |||||||||||| || || ||||||||||||||||||
Sbjct 73 AGATCGATCATGGCTAACTCTGCGATGGCAACCGAGCAACTTTGCTACATCCCTTGCAAC 132
Query 163 TTTTGCAACATAATTCTTGCGGTGAATGTCCCATGCAGCAGCCTGTTCGACATCGTGACC 222
||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||
Sbjct 133 TTTTGCAACATAATTCTCGCGGTGAGTGTCCCATGCAGCAGCTTGTTCGACATCGTGACC 192
Query 223 GTCCGATGCGGTCACTGCACCAATCTGTGGTCTGTAAACATGGCAGCTGCTCTTCAGTCG 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 ATCCGATGCGGTCACTGCACCAATCTGTGGTCTGTAAACATGGCAGCTGCTCTTCAGTCA 252
Query 283 CTTTCACGCCCTAATTTCCAGGCAACAAACTATGCAGTACCAGAGTATGGATCCTCCTCA 342
|||||||||||||||||||| ||||| ||| |||||||||||||||||||||| ||||||
Sbjct 253 CTTTCACGCCCTAATTTCCATGCAACGAACAATGCAGTACCAGAGTATGGATCTTCCTCA 312
Query 343 AGAAG-CCACACAAAAATCCCTTCAAGAATTTCAACTCGTACCATAACTGAGCAACGGAT 401
|| || |||||| ||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 313 AG-AGACCACACCAAAATACCTTCAAGAATTTCAACTCGTACCATAACTGAGCAAAGGAT 371
Query 402 TGTAAACCGTCCT-------C--CGGAGAAGCGGCAGCGAGTACCTTCTGCGTACAATCA 452
|||||||||| | | |||||||||||||||||||||||||||||||||| ||
Sbjct 372 AGTAAACCGTCGTAAGATTGCTTCGGAGAAGCGGCAGCGAGTACCTTCTGCGTACAACCA 431
Query 453 ATTCATAAAAGAGGAAATTCAGAGGATTAAGGCGAATAATCCAGACATAAGCCACAGAGA 512
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 432 ATTCATAAAAGAGGAAATTCAAAGGATTAAGGCGAATAATCCAGACATAAGCCACAGAGA 491
Query 513 AGCATTCAGCACTGCTGCCAAGAATTGGGCACACTTTCCTCATATTCACTTTGGTCTAAT 572
|||||||||||| |||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 492 AGCATTCAGCACCGCTGCCAAGAATTGGGCACACTTTCCTCATATTCACTTCGGCCTCAT 551
Query 573 GCTGGAGAGTAACAAGCAAGCTAAGATAGCCTAATAAT-TCTCGAGAT-TAATGGTAATA 630
||||||||| ||||||||||||||| |||| | ||||| | | | | | | || ||
Sbjct 552 GCTGGAGAGCAACAAGCAAGCTAAGCTAGCTTGATAATGTAA-GTGCTCTCTTC-TA-TA 608
Query 631 TA-AG-TGTTGGAGACTTCGAAGTAACAAGAGCTGAGAAGG 669
| || |||||||||||| ||||||||||||||||||||||
Sbjct 609 -ACAGGTGTTGGAGACTTTGAAGTAACAAGAGCTGAGAAGG 648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30727071102
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5