BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26590.1
Length=1183
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320449 jgi|Araly1|320449|fgenesh1_pm.C_scaffold_4000506 1393 0.0
> Ahg320449 jgi|Araly1|320449|fgenesh1_pm.C_scaffold_4000506
Length=912
Score = 1393 bits (754), Expect = 0.0
Identities = 861/912 (94%), Gaps = 9/912 (1%)
Strand=Plus/Plus
Query 103 ATGAGTTCAAGCGAAGCGTTTCCCGTGATGCAGGAGATCATGCTTGAGTTTCGTGCTGGG 162
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTTCAAGTGAAGCGTTTCCCGTGATGCAGGAGATCATGCTTGAGTTTCGTGCTGGG 60
Query 163 AAGATGTCTTTGCAGGGAACAAGAGTTGTCCCTGATGCACGAAAAGGACTTGTCCGCATA 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGATGTCTTTGCAGGGAACAAGAGTTGTCCCTGATGCACGAAAAGGACTTGTCCGCATA 120
Query 223 GCTAGAGGTGACGAGGGACTGATTCATTTCCAGTGGCTTGATCGAAACCAGAATACAGTA 282
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 GCTAGAGGTGACGAGGGACTGATTCATTTCCAGTGGCTTGATCGAAACCAGAACACAGTT 180
Query 283 GAAGATGATCAAATTGTTTTCCCAGATGAAGCTCTATTTGAAAAGGTTAATCAATCCTCA 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAAGATGATCAAATTGTTTTCCCAGATGAAGCTCTATTTGAAAAGGTTAATCAATCCTCA 240
Query 343 GACAGGGTGTATATTCTGAAGTTCAACAGTGATGACCGCAAGTTATTCTTCTGGATGCAG 402
|||||||||| ||||||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct 241 GACAGGGTGTTTATTCTGAAGTTCAACAGTGACGACCGCAAGTTGTTCTTTTGGATGCAG 300
Query 403 GAGCCAAGAGCTGAAGGTGATGCAGAATTGTGCTCTTCAGTCAATCAATACCTCAATCAA 462
||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||
Sbjct 301 GAGCCAAGAGCTGAAGGTGATGCTGAACTGTGCTCTTTGGTCAATCAATACCTCAATCAA 360
Query 463 -C-C-A--C-T---AGAGTTTCCTGGTGAAGAAGGACTTGCAGCTGCTATCACGGAGGAG 513
| | | | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCACTAGGCATAAAAGAGTTTCCTGGTGAAGAAGGACTTGCAGCTGCTATCACGGAGGAG 420
Query 514 CTGGAAGACATGGCAGAGGATAATACATCATCTAGAGCGGGAAACTTGGTTGTACCAAAT 573
|||||||||||||||||||||||| | || |||||||| |||||||||||||||||||||
Sbjct 421 CTGGAAGACATGGCAGAGGATAATGCCTCGTCTAGAGCTGGAAACTTGGTTGTACCAAAT 480
Query 574 TTGTCTTCAGAGGTGAGTGACGTGACATCGTCCTCTGGACCGGTTAAGCTGGCAGACCTG 633
|||||| |||||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 481 TTGTCTACAGAGGTGAGTGACGTGACATCTTCGTCTGGACCAGTTAAGCTGGCAGACCTG 540
Query 634 CAAAGAATTCTGAACAACCTCTCTGGTGGCCCTGTAGGTATTGCTGGAGATCAAGACGAA 693
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 541 CAAAGAATTCTGAACAACCTCTCTGGTGTCCCTGTAGGTATTGCTGGAGATGAAGACGAA 600
Query 694 GGTTTAGCATTAGGGGATATCTTGAAACCGGAGTTGATAATGCCATTGCTTGAGGCGTTG 753
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 601 GGTTTAGCATTAGGGGATATCTTGAAGCCGGAGTTGATAATGCCATTGCTTGAGACGTTG 660
Query 754 CCGGTACAAGAACGACTATCTTCGCATTTACCTGAGGGTCATTCTAGGGCAGAAGATATA 813
|| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 661 CCTGTACAAGAACGACTATCTTTGCATTTACCTGAGGGTCACTCTAGGGCAGAAGATATA 720
Query 814 CTGGAGTTGTTGCAGAGCCCTCCTTTTCGTCAACAAGTAGATGCATTTACCTATGTACTC 873
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 721 CTGGAGTTGTTGCAGAGCCCTCCTTTCCGTCAACAAGTAGATGCGTTTACCTATGTACTT 780
Query 874 CGCACAGGACAAATAGATTTGACTCAGTTTGGTATAGACCCAAGTAAATACAAGTTCACA 933
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 781 CGCACAGGACAAATAGATTTGACTCAGTTTGGTATAGACCCAAGTAGATACAAGTTCACA 840
Query 934 GTGGACTCATTCCTTGAAGCACTTGAAGACTCGGTTTCAACGCAATCAAGGGATGCGATG 993
|| | |||||||||||| ||||| || ||||||||| |||||||||||| || || |||
Sbjct 841 GTTGTCTCATTCCTTGAGGCACTAGAGGACTCGGTTGCAACGCAATCAACAGAGGCAATG 900
Query 994 GATGAGAGTTAA 1005
|||||||| |||
Sbjct 901 GATGAGAGCTAA 912
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44146337886
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5