BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26600.1
Length=1750
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481526 jgi|Araly1|481526|fgenesh2_kg.4__586__AT2G26600.1 2348 0.0
> Ahg481526 jgi|Araly1|481526|fgenesh2_kg.4__586__AT2G26600.1
Length=1703
Score = 2348 bits (1271), Expect = 0.0
Identities = 1569/1706 (92%), Gaps = 47/1706 (3%)
Strand=Plus/Plus
Query 59 aaacccagaag--aacaaaaaaTCTCTCTTTTGAAAATTCTCCTTTTGC--AAATCATTC 114
||||||||||| || ||||||| ||||| ||||||||||||||||||| |||||||||
Sbjct 31 AAACCCAGAAGAAAAAAAAAAATATCTCTCTTGAAAATTCTCCTTTTGCAAAAATCATTC 90
Query 115 AAGTGAAGCACAATCATCTTCTTCTTCTTCTCCAGCTTCATCAATCTCTTCTAGACTTTT 174
||||||||| ||||| |||||||||||||||||||||| ||| | ||
Sbjct 91 -AGTGAAGCAGAATCA------TCTTCTTCTCCAGCTTCATCAA-----TCT---C--TT 133
Query 175 TGCGTTTACCTG-AAAAACTGTTTTGATCGTAAGTATCTGATTG-CTTCGATGTCGCTGT 232
| | ||| ||| ||||| ||||||||||| ||| |||||| || |||||||||||||||
Sbjct 134 T--G-TTA-CTGAAAAAATTGTTTTGATCGGAAGGATCTGA-TGTCTTCGATGTCGCTGT 188
Query 233 CGAATCAGATTCCCGTTTACTCTCGATGACCCTTTGCTTCTTCTTCCACtttttttCCAC 292
|||||||||||||||||| |||||||||| ||| ||| |||||||||||||||||| | |
Sbjct 189 CGAATCAGATTCCCGTTTGCTCTCGATGA-CCTCTGCATCTTCTTCCACTTTTTTT-C-C 245
Query 293 AGTTTTCTGATAACTCTTCTCAGATGAGAAGTTCTAAGTTActtcttctcaagttcttct 352
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 246 AGTTTTCTGATAACTTTTCTCAGATGAGAAGTTCCAAGTTACTTCTTCTCAAGTTCTTCT 305
Query 353 tcttcttcttc-ttcAATCTGACT-TCGCTTGAGTATCAAGTTGATGGAGCATTTGTTGG 410
|| |||||||| || | | || | | | |||| |||||| |||||||||||||||||
Sbjct 306 TCGTCTTCTTCATTTTTTTTTTCTGT-G-TAGAGTTTCAAGTGGATGGAGCATTTGTTGG 363
Query 411 AACATATGGGATAAATTATGGAAGGATAGCTGACAACATACCATCTCCGGAGAAAGTAGT 470
||| ||||||||||||||||||||||| || || |||||||| |||||||| ||||||||
Sbjct 364 AACCTATGGGATAAATTATGGAAGGATTGCGGATAACATACCGTCTCCGGATAAAGTAGT 423
Query 471 TTTACTTCTAAAGCAAGCTAAAATTCGGAATGTGCGTATATACGATGTAGATCACACTGT 530
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 424 TTTACTTCTAAAGCAAGCTAAAATTCGAAATGTGCGTATATACGATGCAGATCACACTGT 483
Query 531 TCTTGAAGCTTTTAGTGGAACTGGTTTAGACCTTGTTGTTGGACTTCCTAATGGGTTTTT 590
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 484 CCTTGAAGCTTTTAGTGGAACTGGTTTAGACCTTGTGGTTGGACTTCCAAATGGGTTTTT 543
Query 591 AAAAGAGATGAGTTCAAATGCTGATCATGCTTTCTCTTGGGTTAAAGAAAATATTCAGTC 650
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 544 AAAAGAGATGAGTTCGAATGCTGATCATGCTTTCTCTTGGGTTAAAGAAAATGTTCAGTC 603
Query 651 TTTCTTACCCAAGACTCGGATTCGCGGTATCGCTATAGGTAACGAAGTTCTTGGAGGCGG 710
|||||||||||||||||||||||| |||||||| || || || |||||||||||||||||
Sbjct 604 TTTCTTACCCAAGACTCGGATTCGTGGTATCGCGATTGGGAATGAAGTTCTTGGAGGCGG 663
Query 711 TGATTCTGAGCTCGCGGGAGCTTTACTTGGTGCTGCTAAAAATGTGTACAATGCGTTGAA 770
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 664 TGATTCTGAGCTCGCGGGAGCTTTACTTGGTGCAGCGAAAAATGTGTACAATGCGTTGAA 723
Query 771 GAAAATGAATCTGGAGGACACTGTGCAGATCACTACGGCTCATTCACAGGCTGTGTTTTC 830
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 724 GAAAATGAATCTGGAGGACACGGTGCAGATCACCACGGCTCATTCACAGGCTGTGTTTTC 783
Query 831 TGATTCCTACCCGCCTTCGTCTTGTGTGTTTAAAGAGAATGTTGTTCAGTTCATGAAGCC 890
|||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 784 TGATTCATACCCGCCATCGTCTTGTGTGTTTAAGGAGAATGTTGTTCAGTTCATGAAGCC 843
Query 891 ATTGTTGGAGTTTTTTCAGCAGATTGGGTCTCCTTTTTGTTTGAATGCTTACCCTTTTTT 950
| ||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 844 ACTGTTGGAGTTTTTTCAGCAGATTGGCTCTCCTTTTTGTTTGAACGCGTACCCTTTTTT 903
Query 951 GGCGTACACTTATAATCCGAAGGAGATTGATATCAACTATGCTCTTTTCAAGCCAACGGA 1010
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 904 GGCGTATACTTATAATCCGAAGGAGATTGATATCAACTATGCTCTTTTCAAGCCAACAGA 963
Query 1011 AGGGATATATGACCCGAAAACCGATTTGCATTACGATAACATGCTTGATGCTCAGATTGA 1070
||| ||||||||||||||||| ||| | ||||| ||||||||||||||||||||||| ||
Sbjct 964 AGGCATATATGACCCGAAAACTGATCTACATTATGATAACATGCTTGATGCTCAGATCGA 1023
Query 1071 TGCTGCTTACATGGCGTTGCAAGATGCTGGGTTTAAGAAGATGGAGGTTATGATCACTGA 1130
|||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1024 TGCTGCCTACATGGCCCTGCAAGATGCTGGGTTCAAGAAGATGGAGGTTATGATCACTGA 1083
Query 1131 AACTGGGTGGGCTTCTAAAGGGGATTCAGATGAACCTGCAGCAACACCAGAGAACGCAAG 1190
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1084 AACTGGGTGGGCTTCTAAAGGGGATTCAGATGAACCTGCAGCAACACCGGAGAACGCAAG 1143
Query 1191 AACGTATAACTATAACCTCAGGAAGAGGCTTGCTAAGAAGAAAGGGACACCTCTTAGACC 1250
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1144 AACCTATAACTATAACCTCAGGAAGAGGCTTGCAAAGAAGAAAGGGACACCTCTTAGACC 1203
Query 1251 AAAAACGGTGCTTAAAGCCTATATCTTTGCATTGTTCAATGAAAACTCAAAACCGGGCAA 1310
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 AAAAACGGTGCTCAAAGCCTATATCTTTGCATTGTTCAATGAAAACTCAAAACCGGGCAA 1263
Query 1311 GAGTTCTGAGACACACTTTGGACTTTTTAAACCTGATGGAACCATATCATATGACATTGG 1370
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1264 GAGTTCTGAGACACACTTTGGACTTTTTAAACCGGATGGAACCATATCATATGACATTGG 1323
Query 1371 ATTCAACAATCTAAAGTCTGATTCTCCCAAGTCACTCATTTCATCATCAAAGTCAGCTCG 1430
|||||| | ||| ||||||||| ||||||||||||||||||||||||||||| | |||||
Sbjct 1324 ATTCAATAGTCTGAAGTCTGATGCTCCCAAGTCACTCATTTCATCATCAAAGGCGGCTCG 1383
Query 1431 TTACTATGTGGCATTGGTCATCTCTGTCTCGGCTTTCCTCTTGATGATATAAATGCGGAA 1490
|||||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1384 TTACTATGTG--AT----CATCTCTGTCTCGGTTTTCCTCTTGATGATATAAATGCGGAA 1437
Query 1491 ATGGTGTGAGCTTTGACGAT-----CCTTGGATTTGGTCGTACATTCGTAGCACTATAAT 1545
|||||||||||||||||||| ||| |||||||||| ||||||||||||| ||||||
Sbjct 1438 ATGGTGTGAGCTTTGACGATAGGATCCTCGGATTTGGTCATACATTCGTAGCAATATAAT 1497
Query 1546 ATAT-ATTACTAGGGTTGGGACGCTAACGAAATGGTAGGAGCACAAATTTACTGCAATTC 1604
|||| | ||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 1498 ATATTAATACTAGGGTTGAGAGGCTAACGAAATGGTAGGGGCACAAATTTACTGCAATTC 1557
Query 1605 TCATATATGTAGCCAAGAGATATCCAGAAAAGATATCACCAGACACTATCATATATACAC 1664
||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1558 TCATACATGTAGCCAAGAGATATCCAGGAAAGATATCACCAGACACTCTCATATATACAC 1617
Query 1665 ATCTTATGTAAAACAAATCTAATACATAAATTTGGGTCTCTGCTTATATTTTGTTGGATT 1724
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||
Sbjct 1618 ATCTTATGTAAAACAAATCTAATACATAAATTTGGGTCTCTGCTTAGATTTTTTTGAATT 1677
Query 1725 GGATACTGGGGAAATTAACGGATATC 1750
||||||| |||||||||| |||||||
Sbjct 1678 GGATACTTGGGAAATTAATGGATATC 1703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65667582380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5