BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26640.1
Length=1823
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932956 jgi|Araly1|932956|scaffold_400944.1 2281 0.0
> Ahg932956 jgi|Araly1|932956|scaffold_400944.1
Length=1571
Score = 2281 bits (1235), Expect = 0.0
Identities = 1441/1543 (93%), Gaps = 4/1543 (0%)
Strand=Plus/Plus
Query 54 AAGCTATGGATGTAGAGCAAAAGAAACCGTTAATCGAATCATCAGATCGTAATCTACCTG 113
||||||||||||| ||||| ||||| ||||| ||||||||||| |||||||| || ||||
Sbjct 17 AAGCTATGGATGTTGAGCATAAGAAGCCGTTGATCGAATCATCGGATCGTAACCTTCCTG 76
Query 114 ATTTCAAAAAATCAGTGAAGCTTAAATATGTGAAGCTTGGTTACCATTACCTTATCACTC 173
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 77 ATTTCAAAAAATCAGTGAAGCTTAAGTATGTGAAGCTTGGTTACCATTACCTTATCACAC 136
Query 174 ATGGAATGTACCTTTTCCTCTCCCCATTAGTACTTGTAATCGCTGCACAGATTTCAACTT 233
||||||||||||| |||||||||||||| || ||||| |||||||| |||||||| || |
Sbjct 137 ATGGAATGTACCTCTTCCTCTCCCCATTGGTGCTTGTGATCGCTGCGCAGATTTCGACAT 196
Query 234 TCTCTGTCACCGATCTTCGTAGCCTCTGGGAGCATCTTCAGTACAATCTTATCTCAGTGG 293
||||| ||| |||| |||| | |||||||||||||||||||||||||||||||||||||
Sbjct 197 TCTCTATCAGCGATATTCGCAACCTCTGGGAGCATCTTCAGTACAATCTTATCTCAGTGA 256
Query 294 TTGTTTGTTCTATGCTGCTTGT-TTTCTTAATGACTATTTACTTCATGACTCGACCACGT 352
|||||||||||||||| ||||| ||| |||||||||||||||||||||||||| || |||
Sbjct 257 TTGTTTGTTCTATGCTTCTTGTGTTT-TTAATGACTATTTACTTCATGACTCGGCCGCGT 315
Query 353 CCTGTCTACTTGGTGAACTTCTCGTGCTTTAAACCCGATGAGTCACGAAAATGCACTAAA 412
||||| ||||||||| |||||||||||||||||||||||||||| || ||||||||||||
Sbjct 316 CCTGTGTACTTGGTGGACTTCTCGTGCTTTAAACCCGATGAGTCCCGTAAATGCACTAAA 375
Query 413 AAGATCTTTATGGATCGTTCTAAACTCACTGGCTCTTTCACAGAGGAGAATCTTGAGTTC 472
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 376 AAGATCTTTATGGATCGTTCTAAACTCACTGGTTCTTTCACAGAGGAGAATCTTGAGTTC 435
Query 473 CAGCGTAAGATTCTACAACGTTCGGGGCTCGGGGAATCGACTTACTTACCCGAGGCTGTA 532
||||| ||||||||||||||||||||||| || ||||| ||||| ||||| ||||||||
Sbjct 436 CAGCGCAAGATTCTACAACGTTCGGGGCTTGGTGAATCTACTTATTTACCTGAGGCTGTT 495
Query 533 CTTAATGTTCCGCCTAACCCGTGTATGAAAGAAGCTCGAAAAGAGGCCGAGACTGTTATG 592
|| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 496 CTCAATGTTCCTCCTAACCCGTGTATGAAAGAAGCTCGAAAAGAGGCGGAGACTGTGATG 555
Query 593 TTTGGAGCTATTGATGAGCTTCTTGCGAAGACGAATGTGAACCCGAAGGATATTGGGATC 652
||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 556 TTTGGAGCTATTGATGAACTTCTTGCCAAGACGAATGTCAACCCGAAGGATATTGGGATC 615
Query 653 TTGATTGTTAACTGTAGTTTGTTTAACCCGACACCTTCGTTATCTGCTATGGTTGTTAAT 712
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 616 TTGATTGTTAATTGTAGTTTGTTCAACCCGACACCTTCGTTATCTGCTATGGTTGTTAAT 675
Query 713 CACTATAAGCTCCGCGGGAATATACTTAGTTACAACTTGGGAGGAATGGGTTGCAGTGCT 772
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 676 CACTATAAGCTCCGTGGGAACATACTCAGTTACAACTTGGGAGGAATGGGTTGCAGTGCT 735
Query 773 GGTTTGATTTCTA-TTGATCTTGCTAAACATCTTCTTCACTCTATTCCCAACACTTATGC 831
|||||||| || | |||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 736 GGTTTGATCTC-AGTTGATCTTGCTAAACATCTTCTTCACTCCATTCCTAACACTTATGC 794
Query 832 AATGGTGATTAGTATGGAGAACATTACGTTGAACTGGTATTTCGGGAATGACCGGTCGAA 891
|||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 795 AATGGTGATTAGCATGGAGAATATTACATTGAACTGGTATTTCGGGAATGACCGCTCGAA 854
Query 892 GCTTGTTTCTAATTGTCTGTTTAGAATGGGAGGTGCAGCGATTCTTCTTTCGAACAAAAG 951
||||||||| |||||||| ||||||||||||||||||||||||||||| || |||||| |
Sbjct 855 GCTTGTTTCCAATTGTCTTTTTAGAATGGGAGGTGCAGCGATTCTTCTCTCTAACAAACG 914
Query 952 ATGGGACAGAAGAAGATCGAAATATGAGCTTGTTGATACGGTTAGGACTCACAAGGGAGC 1011
|||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct 915 ATGGGACAGAAGAAGATCGAAATACGAGCTTGTTGATACGGTTAGAACCCACAAGGGAGC 974
Query 1012 TGATGATAAGTGTTTTGGTTGCATAACTCAAGAAGAGGATTCCGCAAGTAAGATTGGTGT 1071
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 TGATGATAAGTGCTTTGGTTGCATAACTCAAGAAGAGGATTCCGCAAGTAAGATTGGTGT 1034
Query 1072 TACCTTGTCGAAAGAACTTATGGCTGTTGCGGGTGATGCTCTAAAGACAAATATTACGAC 1131
|||| ||||||||||||| ||||||||||| |||||||||||||||||||| || || ||
Sbjct 1035 TACCCTGTCGAAAGAACTAATGGCTGTTGCTGGTGATGCTCTAAAGACAAACATCACAAC 1094
Query 1132 GTTAGGACCACTGGTTTTACCGACATCTGAACAGCTTCTGTTCTTTGCAACGTTAGTGGG 1191
|||||||||||||||| | |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1095 GTTAGGACCACTGGTTCTGCCGACATCTGAACAGCTTCTATTCTTTGCAACATTAGTGGG 1154
Query 1192 AAGAAAACTCTTCAAGATGAAGATCAAGCCTTACATCCCAGACTTCAAACTAGCGTTTGA 1251
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1155 ACGAAAACTCTTCAAGATGAAGATCAAGCCATACATCCCAGACTTCAAACTAGCGTTTGA 1214
Query 1252 GCATTTCTGCATCCACGCAGGAGGGAGAGCTGTTCTTGATGAATTGGAGAAGAACTTGAA 1311
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1215 GCATTTCTGCATCCACGCGGGAGGAAGAGCTGTTCTTGATGAATTGGAGAAGAACTTGAA 1274
Query 1312 ACTCACAGAGTGGCATATGGAGCCCTCGAGGATGACACTCTACCGTTTTGGTAACACGTC 1371
||||||||| ||||| ||||| || || || |||||||||||||||||||||||||| ||
Sbjct 1275 ACTCACAGATTGGCACATGGAACCATCAAGAATGACACTCTACCGTTTTGGTAACACATC 1334
Query 1372 CAGTTCTTCTTTGTGGTATGAATTAGCATATAGTGAGGCCAAAGGAAGGATCAAGAAAGG 1431
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1335 CAGTTCTTCTTTGTGGTATGAATTAGCATATAGTGAGGCAAAAGGAAGGATCAAGAAAGG 1394
Query 1432 TGATAGAATTTGGCAGATAGCTTTTGGTTCGGGGTTCAAGTGCAACAGCTCGGTTTGGAG 1491
||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| |
Sbjct 1395 CGATAGAATTTGGCAGATAGCTTTTGGTTCTGGTTTCAAGTGCAACAGCTCAGTTTGGCG 1454
Query 1492 AGCGGTAAGGTCGGTAAACCCTAAGAAAGAGAAGAACCCATGGATGGATGAAATTCATGA 1551
|||||||||||| || |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1455 AGCGGTAAGGTCAGTCAACCCTAAAAAAGAGAAGAACCCGTGGATGGATGAAATTCATGA 1514
Query 1552 GTTCCCAGTTGAAGTCCCCAAGGTCTCCACAATCTAGAAACCA 1594
|||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1515 GTTCCCAGTTGATGTCCCCAAGGTCTCAACAATCTAGAAACCA 1557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68448170265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5